Array 1 168938-169306 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASWE01000001.1 Enterococcus phoeniculicola ATCC BAA-412 acOtz-supercont2.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 168938 36 100.0 30 .................................... AATTTTTGCATTCGAACCTGTTGGATCCTT 169004 36 100.0 30 .................................... GAGTGCAAGCTGAAGACAGTCATTCTGATT 169070 36 100.0 30 .................................... ACTAAACACTGACGAGCTTTTATACATTGA 169136 36 100.0 30 .................................... TATTAAGCTGGAATTTTGTACAGTGATAGA 169202 36 100.0 30 .................................... GACATTATCAATTTCTGTTTCGCTCATTTG 169268 36 88.9 0 .................G.......TT.....T... | A,TG [169293,169301] ========== ====== ====== ====== ==================================== ============================== ================== 6 36 98.1 30 GTTTTAGAGCCATGTTGAATTGAATGCTTCCAAAAC # Left flank : CGGAAGAAAAAATGGCTGCAGGAAGAGCAGCATTAGTAGAGGCGCATAATACTCAGACTGGACTCTTGGTGGAAGAAGCAAGTGGAAATCATGCCACGATTACGTTACTTATGGTTCATAGTCAGGATCACCTGATGAATGCCATCTCTTATTTGGATTTAACGCAGGAATTAATTGATATTCACAAAAGACTATCTGAATAGAGACGAATTTTCATAGAAGAGACTGGATTCATAGAACAAGAAAGATGTCGGAACAAACACCTCTGAGGGCGAAATCCTCATGAGTGTTTGTCTCGACATCTTGTTTAGGTTTCTGGGAGATAAGAGAAGAAACTACTTCGTTATGGACATAATCATGGTATAATTGATGGGAAGTATATGGGAAATGTTCCTTGATAATCACATATTCAAGATAATATGAAGTATTCAAAACTGAAGTCTTGCTATGGACAAATGGCGCGATTACGGGATTTCGCAGAGAAAGAAAATGGCTGCGAG # Right flank : CTAAGTTATCATTGTCAATAGATTCTGTGAATAGAAATTAAACAGTCTAGGATAGTTTAGGTAGTTATTGTTCACTGAGAACGTATAGAATTTCTTGAATATGCCCATATTGATGTCAATTTCATGGTTCTTTCTCTAAACTTACGAGATGAAACTGTAGACTTAACTTGATAGTCTTAAATGAGAGAGAGAATTATTCCACTTATTTGAAAACGTTTCCTTTTTTGTAGATGATTTTAAAGGTGATTACTTATGTCAATTAATTCAAAGAAAGCAATATTTCTCAGTGGATGGATATTCATATATTCCCTACTGTATTCTTCAACTGTATTCTTCCGTTTTGATAGTGATGTTATCAAACTTCTATTTGTAATATTCGGTTTTTTTCTATTTAGAAAAGATATATTCAAGCAAACTAAAAACACGAATCACATTAGATTAGGGTTTATTTCTGTTATTTCAGCAATTATTATCTTCATAGTTGTCTATTTATTTTATAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCCATGTTGAATTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 185602-186165 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASWE01000001.1 Enterococcus phoeniculicola ATCC BAA-412 acOtz-supercont2.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 185602 36 100.0 30 .................................... TCTTGTTGGAAAATAACTTCTTGATACCAT 185668 36 100.0 30 .................................... ACAATCACTATCACTAGAGATTGAACTTCT 185734 36 100.0 30 .................................... TTGTCCACCACCTTGCATAGTTGACAGAGT 185800 36 100.0 30 .................................... AAAAAGTAATAACATAGGATAGAGGAGCTT 185866 36 100.0 30 .................................... GTCCTCGCCTTCCGTCACTTCATCATCTGA 185932 36 100.0 30 .................................... TATGATGGCATCATCTGCTAGATCAATTTA 185998 36 100.0 30 .................................... TAGTCAACAAGTAAAGAGAACCATCCATGT 186064 36 100.0 30 .................................... GTTGATTGTCTTAGATTAGATAGCTGTGCT 186130 36 86.1 0 ..........T...C..........A...TT..... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 98.5 30 GTTTTAGAGCCATGTTGAATTGAATGCTTCCAAAAC # Left flank : ACTAATGATGTAAGTATTCAAAGGACGAAAGACTAAAAATCAAAAGAATACTGATCATAAGAAATGAGCAGTGAATGGCTGTCAGCGATTTTGGACAGTAGCAATAGTTTGGGACAGTTTTTTTCAGTCCGCTACTGATCCAGATGCAAAGAGTGTAGAAGATAACTATTTAGGTTATGGTCTACACTCTTTTTTGGAGCCATGGGAGGTAAAGAAGTATTCAAGTAATAGCTAATTTTGTTTCACAAATTGTAGTAAAGAGGAGTGAGTTCCATTAAGGAAAGAAGACATCCTTACATCGGATAAGGCATATTTTTTAAGTCTATATAGAAAGAATAGTTATAAGAAGATAAACCATGTTATAATAAATAAGGAGTGAATTCAAATAGCTTATTGAAAATTTTATAATAAATAGAAATGAGAAGCATTCAAAGCTGAAGTCTTGCTATGGACAAATGGCGCGATTACGGGATTTCGCAGGGAAAGAAAATGGCTGCGAG # Right flank : CATATTGCTATGGACGAATATCTTATTCAGAATCAACTAAAAGAGTACATTGAAGGTTTGATAGAATCATTTGAGATTTTTCAAGGAGTCGATACTAAGGGTTTGTTTAATAAGGTGGTAATTACAATCAAAAAACAAATATTTTTATTTTGTCTTATAGTAGCTGGATTGTTACTCGTTCTTTTTGGATTTATATTGTCTGTAAATTTAATACCAATTCAAGATTTTGATCCAAGCACTATGACAAAAATTGAAGAAGAAAAATTTTTAAATGAAATGGCACTTAATTATCCGTTGGGTAAACTACTAGTGAAAGTAGGACTTGTAATTTTTATTCCTTCGCTATTCGGGAGCGTGTATTTGCTATTAAAAAAATTAATAAAACAAGCGAACAAATAAAGAAGTAGCTAGACTTGTAGAAACAGGTGGTTACTTCTTTTTCTATATGTGAGTCATTTAAATTTATAGTAGCAGGGCGTAGAGATTAGTTAGTGATAGAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCCATGTTGAATTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 3 187883-188116 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASWE01000001.1 Enterococcus phoeniculicola ATCC BAA-412 acOtz-supercont2.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 187883 36 100.0 30 .................................... AAAAGATATTGATTTGAGATATACTAATTC 187949 36 100.0 30 .................................... TGTTTTAGTTTTTCATATTCGTCCATTCCT 188015 36 100.0 30 .................................... AGAAATAATGCCTGTATGACCATAATTGCC 188081 36 75.0 0 .........................A.C.AGCGCTT | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 93.8 30 GTTTTAGAGCCATGTTGAATTGAATGCTTCCAAAAC # Left flank : AGAAAATCCTGAAATGTATCAGAATATTGTTGTATCAGATAATCTGATTACTTATGAAGTTCATCCTGAGGGTGAGTATTTTATTCGATTGGTAGACGCAGATACGATTGAACTAGTAAATAAAGAAAAAGAGAATGAATATGTTTTAGGTATCTACAATAGAAAATAAGGGTTGTGAAATATCTGTTGTGTTAGAGAGTCTTTGTTCCGGCTAGTAATGAATAAACAAGAAATAAACGATACTCAAAAAATGAATGGAGACTATCCACACAAGCTAAATGTACATTTAGCTGTGTGAATACGATACGATGTATCCCACATGATATATAGAAAGAATAGTTATAAGAAGATAAACCATGTTATAATAAATAAGGAGTGAATTCAAATAGCTTATTGAAAATTTTATAATAAATAGAAATGAGAAGCATTCAAAGCTGAAGTCTTGCTATGGACAAATGGCGCGATTACGAGATTTCGCAGGGAAAGAAAATGACTGCGAG # Right flank : TGTTACATTTAAAGGCTACTAGAATCCCGGAAATGAAAGCGTGTTCTTTTTCGTGGCGGAAGTGAGTGAAATCCACATCTTGCTTATTTTTACTGTATAAAATGGGATAAAAGAGTAGGTTTCTGACCCGTTAAAGGTGAAAAAGTAGGATAATATGGAAGGAAATCTTTCGTATTTAAACGCGTATGATATAATAAGTTATATATTTCTACTGTTTTATTTATAAAACGCAACAAAAAAAGCACCGAATCAGTGCTCTATAATTGGGTACGGACAAAGCCTTATTTTAACTCGCTATGTTGAATTGAATACTACCAATAAATTCATTATAGCATGGAAATCGAAATATTCAATTGTTTAATAAAAGATTATGAATAAAAAAATGAATAAAGGAGTTTGGTGATGAAAAAAGAGTATACGATTGGTTTAGATATTGGAACAAATTCCGTTGGATGGGCCGTATTGACTGAAAATTATGATCTTGTCAAAAAAAAGATGAA # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCCATGTTGAATTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC with 88% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 4 194512-194944 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASWE01000001.1 Enterococcus phoeniculicola ATCC BAA-412 acOtz-supercont2.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 194512 36 100.0 30 .................................... GAGTCAAAATCAATTTTATTCCCTCTGGAC 194578 36 100.0 30 .................................... AGAGAAAATGATTGTTTGTACTCGGTGTAA 194644 36 100.0 30 .................................... TTTTTATCTCGCTCGTACACTGTCCAATCA 194710 36 100.0 31 .................................... CAATTTGACTTGCGCTTTTGTTACCCCATGA 194777 36 100.0 30 .................................... GGAAACATCTATGAGAATCCTGAACTCATA 194843 36 100.0 30 .................................... CGGAAAACAAAAGGAAGAGTCTGAAGGCGG 194909 36 94.4 0 .............................T.....A | ========== ====== ====== ====== ==================================== =============================== ================== 7 36 99.2 30 GTTTTAGAGCCATGTTGAATTGAATGCTTCCAAAAC # Left flank : GCTAGCTTCAACGATTAGTGATTTGATTGGTTATGAATTACTGGAACACGAACTTGATTTAGAGGAAGATGAAATTACAGTTCTCGAACTTTTTAAAGCGTTAGGTATACAGATTGAAACATCAAGTGATACTCTATTTGAAAAGATTATTGAAATCATACAAGTTTATAAATATCTTTCTAAGAAAAAGCTTTTAGTTTTCATTAATGTGTGCGCCTATCTGACAAAAGAGGAATTATTGGAAATTAAAAATTACATTGCGTTGTCTCAAGAACACGTTCTTTTCTTGGAGCCGAGAGAATTACCGGATTTTACAACCTATTATTTGGATGAAGATTATTTTTTACATCAAGAAGGCACGGTATAACTTAGGAGAATTATGTAGATCAGGTCATTGATAATTGAATCTAAAGGAAGAAAGGGAGTATTCAAAGCTGAAGTCTTGCTATGGACAAATGGCGCGATTACGGGATTTCGCAGAGAAAGAAAATGGCTGCGAG # Right flank : ACAACGTTTCATCACTAACGCTTACAAAAAATTATTTTAATAAATTAAAGGTATATCAATTTTCCTGAGGGGGTAAGCTATGAGAAAATTATTAATAACAGGTGGTACAGTATTTGTTAGTCGTTCTTTAGCAGAATATTTTGTTGCTAAAGGAGATGAAGTTTATGTTTTAAATAGGAATAATCGAGTACAGTCTGAAGGGGTTCACCTGATTGAAGCGGATCGTTATCAGTTAGGAGATGTCTTGTCGGAAAAGGTATTTGATGTGGTTATAGATGCAAATAGCTACACAAAAGAAGAAGTTTCTCTATTGGTGGATGCATTACCTTCTATAAAGGACTATATTTTTATTAGTACTAGTGCAGTTTATCCTGAAACCTTGTCCCAGCCTTTTTTAGAAACACAGTCTACCGGAGAAAATCATTATTGGAAATCCTATGGAACAAATAAAATAGAGGCAGAAGAATATTTAGAAACCCATGTTCCACAAGCTTATATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCCATGTTGAATTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 237424-237997 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASWE01000003.1 Enterococcus phoeniculicola ATCC BAA-412 acOtz-supercont2.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 237424 33 97.0 36 ...........C..................... TTCCATGGAAGGATTTAAATTAATAGGGTCTACTAC 237493 33 97.0 33 ...........C..................... AAATATTAACATTGCAGAAGAAAGAGAAATTCG 237559 33 97.0 33 ...........C..................... TCCTGATTATATAAATGCTTTAAATAAAATAGA 237625 33 100.0 35 ................................. AATCACTTGCTCGTTATTATCTGGGGATACAGTGA 237693 33 100.0 34 ................................. GCTTTAAATGGACAGTTGACTATGATGGTCGTAG 237760 33 100.0 36 ................................. ATGTGATTGCGGCAGAAAATATAGGGAGGTGGACAC 237829 33 97.0 36 ..................T.............. TACTGCATTGATTGTTTGTCTTGTCACATTGACAGC 237898 33 93.9 34 .........C...C................... ATCAACAGTTAATCCGTACATGTTGATGATTGAT 237965 33 81.8 0 .........C..............T..GCT.C. | ========== ====== ====== ====== ================================= ==================================== ================== 9 33 96.0 35 GTCTTGCCCTTTATAGGGCAAGTGGATTGAAAT # Left flank : ATTGAAGAGTTATTGAGTAATCCAGGGATTATTCGTCATCCGTTGAAAGTAAAGGCAGCAATCAATAACGCACAGAAATTCTTGGCTATTCAAGAAGAATTTGGCAGCTTTGATACCTATATTTGGGGATTTGTTGATGGTCAGCCTATTATGAATCACTGGAAGGAAATGAGCGAAGTTCCAGGAACCACAAAGCTATCTGAAAAAATCAGTAAAGAATTAAAAAAACGAGGCTTTAAATTTTTAGGAAGTACAACGGTTTATGCATTTATGCAATCAATTGGGATGGTCAATGATCATGTGGAAGACTGTTTCTGCAAATACTCAACAAAATAAATAAGGTGCGGATGTGAAGTGGACATGAAATCCCCGGGACATCCGCACCATTTTTTGCGTGAAAAGAGAGGGGAAAACCCTCTTTTTCTCATACATATTTAATGTTATACTAAATGAAAGACGAAAAAGGGAAAATGCGTTCGTGTAACAGCCCTGTTTTCGCC # Right flank : TGTTTATTTATTGAAAAGAATGGAATTTTGTGAGCGTTCATCAAAATTCCATTCTTTTTTTGATAGTTATTTCTTTTTTGTTTGATAGTGTTCATAGCGAGCAATCCAATCAGCTGGGCTCATTTTTTTCGCGAGTTCTCCCATTAACTCATAAGGGATTGTCTTTGGATTAGTGAAGCGAATACAGCTTTTTCCCATATTTAGCTTTGTGGGTACCTGTTTTTTATATTCTTCTTCAAACCATGAGAGTAGAGAAGGATTGCTCATGATTCCCATGTGATACACAGCGAAATGATTCTTTTGTGCGCCAAGAGAAAGAAAAGGTAAAGGCTCATCTGGTCTATTTAAATAACCGTTTGGATAAGCACTTAGAGGGACAACAAAAGTAGGCATCCCATATTGCAACACAAACTGAAATCCTTCGGGGAGGTTGGTAAGAAGCTGTTCTTTTAGTAAAAAGTAGCTTGATTGCCATTTCTCCGGTAAATTCGCTTCGTATT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGCCCTTTATAGGGCAAGTGGATTGAAAT # Alternate repeat : GTCTTGCCCTTCATAGGGCAAGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //