Array 1 121468-121628 **** Predicted by CRISPRDetect 2.4 *** >NC_019954.2 Tepidanaerobacter acetatoxydans Re1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================== ================== 121468 24 100.0 43 ........................ TGAAACTAAATTTAAAATCTGCCAGAAGTTCACTAAGACCCAG 121535 24 100.0 46 ........................ TGAAACAAATATTTAACTCCATTACTTAATCGATGCGGAGAGACGC 121605 24 91.7 0 ....T.................C. | ========== ====== ====== ====== ======================== ============================================== ================== 3 24 97.2 45 GTTTATAGCCTACCTATAAGGGAT # Left flank : TTAGGATATAAAGATAGTTTTGATTACGATTTATCTAAAATATTTCCCGACTTTAAATCAGACCAATTTGAGAAAACACTTAATGTGTTTCAAAGAAAGGCTTTGCTTAGGCTTATAATGGCTAAAATGCATGATTATATAATTCAAGTAAGAGTCTCACGATTAAAAGAAAATAGACCTGTGGAATTTAAAGAGAGAGGAAATATAGAATCTAGTTTGTACTGGGTGCCTCCAACCAAATGTGATGATTATTATGATGAAGATACGGGTTTTAAAGATGAAAGCGGTGACGGATTCATTTAATATAAAATCCGATACAAAAAAGTTGTCGATGGGAATGGTGCAAAAACCCCTGGAGGTCGACGACAACCTAAAATCACACTCAAATAAAGAATAGAAATGGAAAAGAAGGACTTTTCGATTTAATGTAGAAATTATTAATAGAAAATTGAACAAATTATTTTTCTCGCTCTTTCTTTATTTTTTACCCCAAATTACGG # Right flank : TCACATCTTCTTGTTTCTATGCTTAAATAAATAGTAAATTATTTGGCTTTCCCGTATTTGCACACTTTTCCTTTATAAATTTAAACCCTTTTTATGGGTTTATTTTTATGTCGTTGAAAATTTGATATATTAAACTTAAACAGGTAACACGCTATGGCAAAGTTGTTGTCTGCCGAAACAAAATGCTTAAAGGGTGAGATGGATGTTTATCATATTGGTGTATGATGTTGGGGAAAAGCGAGTGGCGAAGGTCCTGAAAATATGTCGGAAGTATTTAACCTGGGTGCAAAATTCTGTGCTGGAAGGGGAAATTTCTGCTGCGAATTTCAAAAAGCTAAAGCTAGAATTAAAGCGAGTTATCGATGAAGATGAGGATTCGGTCATATTTTATATATTGCGAACAACTAAGTATTCTGAGAGGCAGAGCATGGGGATAAAAAAGGGCGGAGATGAATTATTTATTTGATTTGGCTAATGCGGCGAAAAACTTATATAATGCA # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAGCCTACCTATAAGGGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 131275-132509 **** Predicted by CRISPRDetect 2.4 *** >NC_019954.2 Tepidanaerobacter acetatoxydans Re1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 131275 30 100.0 37 .............................. TATTTTCTTTTTTTTATGCATCATAGACACTTCAAGT 131342 30 96.7 37 A............................. GGGAAAATACAGGTAAGGAATTGTTTATAAATGCGAA 131409 30 100.0 36 .............................. TCACCAGGAACAAAATCAATTTCAGCAATCGATGAA 131475 30 100.0 37 .............................. AACGATATAAAAGTCAAAGATACTGATGTCATAGTGG 131542 30 100.0 38 .............................. TCTCTTTCAGCAAATCTACGGGCTATCCTCTTGGCGTA 131610 30 100.0 37 .............................. GTGCTGAGCCGCTAAATGTGATTGTGCTGTTTACTTT 131677 30 100.0 37 .............................. TCTGTTCCGTATCCTTTTTGCCATAAACCAGTTTTGT 131744 30 100.0 35 .............................. ATTGCTTCTTCAACACCTTTTTCAATTCCAGTGTG 131809 30 100.0 39 .............................. GTAGATAGAAACCCATACTTAGATAGAAGCCTTCTTAAC 131878 30 100.0 38 .............................. ACCAATGCAGTTAAATAAACTTTTTAATGATCTACTAA 131946 30 100.0 37 .............................. GTAATTATGGGGCCTTTTATTATCCTAACGTCAAGAG 132013 30 100.0 37 .............................. CATTTTATGCAGAAGAGGATGGATTAGACTTTGAAGA 132080 30 100.0 38 .............................. TCTTCTCTCCGTTGTCTTTGTTTCGCTGTCTCCCTCTC 132148 30 100.0 36 .............................. GTCCAATCGGTCTTTACCTCCACCATTTGAAACCTC 132214 30 100.0 36 .............................. TCATCATGGTTATCCAGCTTATTAACGAGCTGGGCC 132280 30 100.0 36 .............................. TATCATCAGCCGCCGCTCCTTCCGCCGGTATGAATT 132346 30 100.0 36 .............................. TTTGGTATGATTTTCAGGGTGTTGGTGGTAGAACAG 132412 30 96.7 38 .....................G........ AAATATTCTTTTTTAAGGCATCGCATATCCTCAAGCAA 132480 30 73.3 0 ...GT..A.A.........A.GC......T | ========== ====== ====== ====== ============================== ======================================= ================== 19 30 98.2 37 GTTTATAGCCTACCTATAAGGAATTGAAAC # Left flank : GCAAAAAAAGCCTACAATGCTCTAAGCTTAAGAGATTATGCCAGAGTTGACGTAAGAGTAAAAGACGATACTCCATATGTCCTTGAGGTTAATTCATTACCAGGCCTGCAAAAAGGCTATAGCGATATCACCAAAATGGCCAGTGCCTGCAATCTAGCTATGAAGGCCTTATCCTTAAAATAGTTGAAAATGCCATAAATCGCTACAAACAAGCCAGTGAACAAAAGGTAGTATAACCTAAAAAATCAAATAAAAATCGTCAACCATCTCCGACCAGGGCAGCATATATAATTTGACATGCAACATGCTTTTACGCAATTAATGTCGTCGACCTCCGATAGCGCAAAAACCCCTGGAGATCGACGACAACCCAAAATTACCCCCAAATAAAGAATATTACTGGAAAAGAAGGACTTTTCGATTTAATGCAGAAATTATTAATAGAAAATTGAACAAATTATTTTTCTCGCTCTTTCTTTATTTTTTACCCCAAATTACGG # Right flank : TAACACCGTATGTAATATATATATTTGGTTTATGGTTTTCTATGGATGGATGTGCATTAAAAAAATATGTGTTAATGTGTAGAGGCGGTCGATGACCGCCTCTACATGTTTGCAATTCCTATATGGGAGAGAAGCCTGCAGTGTAGAAAAAAGATGGGGTACCGGCAAAAAAAGGTTTGTAATTCATATATTGCAGTCAAGTAGGGGAGACCATTGGTCTCCCGCTTATTACTCATTATTGCCTTTGGTCGCCAGCCTGCTTATCTAGAGCCTTAGGGCGCATTTCTTTTGATTTATATCTAGCATTTAAAGAATTAGAGAAAAAAATCACTTTTAGGCAGGATTTTTAGGTAAGTTAGTCGAAATATTTCTTAAATATCAAAAAAATTTTAATAATAAGAGGTGAGATAATTGGATATTTTTACTAGTTTTACTGATCTAGTGCTTTTGGTTGGAACAAATCCTTTGCCAAATTATATAGTAATAAAGTATTTTTTAAA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 3 142529-143157 **** Predicted by CRISPRDetect 2.4 *** >NC_019954.2 Tepidanaerobacter acetatoxydans Re1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 142529 30 100.0 36 .............................. TGGACTTAAAGTTCATCCCATCGCTGTCGCAATGTG 142595 30 100.0 37 .............................. ACGACATGAACCAACCAGCAGAGATAACAGATACACA 142662 30 100.0 38 .............................. TTTGTTATTATAAGGCTATTATGTTCTTTACATCTATA 142730 30 100.0 38 .............................. CGGAAGCAAGAGAACCAATTACAATAACATTCAAAGGA 142798 30 100.0 37 .............................. CTTGCAACAGTGTGGGAACCAAAAAGGAACTTTAGTG 142865 30 100.0 37 .............................. TTTTTTTACGTAGGCCGTTGTAATCCCTAATGATAGC 142932 30 100.0 36 .............................. TTCCCAACCGCCCCAGGATCTTTCCCGCCATGCTAA 142998 30 100.0 35 .............................. TTTCTTGTGATGATCTTGATACATTGTAGTTAGGG 143063 30 100.0 35 .............................. CGTCTCCAAATTCGTTGTATTCTAGACCTATACTG 143128 30 93.3 0 ............................CT | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 99.3 37 GTTTATAGCCTACCTATAAGGGATTGAAAC # Left flank : AGGATTATCTAGAAGAAATTTTTTGTTGGCTAAAAGAACATTCAAAGCCAAATGATATAGTATTAGTCCAAGGAGAATTTGGAGCGGTCTTTTTAACGGCTAACTTTTGCATAAAAGAAGGACTTGTTCCTATATATTCTACTACTAGAAGAGATGTGGCAGAGACAATTCTTGATGATGAAACCATTCAGACGAAACGAAATTTTATCCATGTAAGATTTAGAGAGTTTGAAAAATGGGACTAAAATTTTAAAAAATATCTTATGGGTGAAGAAGAGTAATAAGCATTTGTAGCAAAATGGTAAATTGTATATTCTAAAATTGTCGTCGACCTCCGATAGCGCAAAAACCCCTGGAGATCGACGACAACCAAAAATTACCCTCAAACAAAGAATATTACTGGAAAAGAAGGACTTTTCGATTTAATGCAGAAATTATTAATAGAAAATTGAACAAATTATTTTTCTCGCTCTTTCTTTATTTTTTACCCCAAATTACGG # Right flank : TTTCTTATAACTCTATAACCTTGGCATGAAAGGCACAGCAGCACTTGAAATTATGGAGGTAAAAATGAAAAAATATTGTATTATCATACTTATTGTATGTATGATGCTTGTGCTAACTGCTTGCGGGAATCCTAACAGTGAAGTAGTAGGCGAATATGATACAAGCAAACTTGGAGGTGATTTTGTTAAAAGCAGTAATGAAGCTTATGCTATAGGAGCTAATAAGGATAAAATGCCGGTTTTTAAAGATACTGACAAAGCTTTTAAACAAGCCCTTATTGATTATGCAGAGGGATTTAAAGCCATTCAAAAAGAATTTAATTTAAAACCGATTAATAAGAAAAACTGGGAAGCATATAAAACTTATGGATGGCAATTATCTGCTGATAATGATGAGGAAATCCGCAAACAGGGAAGGGAGATAACGCAATTTTTCGATATATATGAGAACAGTTTTAAGTAAATAAGTGGTCTTCATATCAAAAGTATAAATAAATTCA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAGCCTACCTATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 4 147551-148516 **** Predicted by CRISPRDetect 2.4 *** >NC_019954.2 Tepidanaerobacter acetatoxydans Re1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 147551 30 100.0 35 .............................. ATGCTTCTAAAGGCGGGACTAACAATCAAATACTA 147616 30 100.0 39 .............................. TTTAATACATATATGCCTTGGCGGGTCTGGAAAACGGCT 147685 30 100.0 36 .............................. AATTTTCGGCTCTGATGGATTTAGCCCCGATGCTCT 147751 30 100.0 37 .............................. TATCGTACACCTTAAAAGGTGTCTTGATAACTTTGAA 147818 30 100.0 37 .............................. AATTCTAAAATCGTATTGGCTAAAAAACTAATATTAC 147885 30 100.0 36 .............................. AAATATGAATTTATAGATAAAATGGAGCAACAAGGC 147951 30 100.0 36 .............................. TGTTTTTAAGTGCCCATGATTTTCCGGTCAGCGGCA 148017 30 100.0 36 .............................. ATCTTCTCGTATACATGATGGATAGCGAAAAAAGAA 148083 30 100.0 36 .............................. GGGAAGAAACCTTACAACTTGTGCTAGAAATGCGAT 148149 30 100.0 38 .............................. GGTAATAGATAAACTGTATGGAGAGCAAAGCGAAATAT 148217 30 100.0 38 .............................. AGCTATTTAATCTGGCAGTTTTATTCGTTACTGGGTCT 148285 30 100.0 35 .............................. GCGAGTATATCATCTCTCATTTCACTTATGGCTTG 148350 30 100.0 37 .............................. ATAGTAGTAACCGGAATAAACTCCTTCCAAAGCTCTC 148417 30 100.0 39 .............................. ACATAATTTATCCGTTTATCTATATCAACTGTAGCCATG 148486 30 100.0 0 .............................. | C [148494] ========== ====== ====== ====== ============================== ======================================= ================== 15 30 100.0 37 GTTTATAGCCTACCTATAAGGAATTGAAAC # Left flank : GCACCATGAAATCAGTGTCTTCCACATATCCTTTTGTGCAACCCCTAGACCCCTCCTCGCTCTTTTTCACCGTTTTTTACAGTTGGGCAGTTTGGTTTGTGACACTATTCGCATGCATTTCAGGCTGGGGCAGGGAGCTTGAAGGAGAAGACGGAGGAAGAGTTAAACACCCATCGGCATGATAAAGGTAAAGGCTTGGTTTTTCACTTTATAAAATATTGAAATATAAAATAAGTAAGAAGCTTAGAAATGTAATTTAATGTATGATATACTTTTATGTGATTATAGTGAGAAAATCGCATAGAAAAAACTCACTTTAAAAAGTCGTCGACCTCCGATAGTGCAAAAACCCCTGGAGGTCGACGACAACCTTAAATTACCCACAAATAAAGAATATAACTGGAAAAGAAGGACTTTTCAATTAAATGTAGAAATTATTAATAGAAAATTGAACAAATTATTTTTCTCGCTTTTTCTTTATTTTTTACCCCAAATTATGG # Right flank : CACTAAGTCTGTTACGTTTCAATGCAATATAAATACGTTGTTTTAATTTCCCCCCCAAGAGCCTTGAAATAGCACCGTATGTAATATTTGATTTGTGGTTTCCTGCGGATGTGCATTATCCTCTATGAGATATTCATGGAGGATTTTTTAAAGCTTAAAAGAAAGTTATGTAAATATAAAATTGAATGAACAATGAAGATTGATAAAAAGTTTATAATATGATATTATATTCTAAGAAGGCAGTATAATCAGATAACATAATCCCATCAGGCTTAAAAATTAAACTCCCCAATTTTAACTTAACTAAGGACAAGAAAATAATTTTATAGGCGTTATGCCTAAATAAAAAAAATAAAAGGAGACGATTGTCTTGAATAAACCTATTGACAAAAATTATCAATTGTTAATTGGAGGTCGATGGGTGGATGCAAAGGATGGGGAGACGTTTGAGACTAACAACCCGGCAAATGGCGAGCTGTTAGCAACTTGTGCCAATGCCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 5 237246-241552 **** Predicted by CRISPRDetect 2.4 *** >NC_019954.2 Tepidanaerobacter acetatoxydans Re1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================================================== ================== 237246 30 100.0 35 .............................. GATGTTAACTTTATAAACATAAATGCAGACGAACT 237311 30 100.0 39 .............................. CATTTGAGGATCTGGAAGGGCTGACCTTAGCCTCCGGAG 237380 30 100.0 36 .............................. AGAAACGACACGACAAATTATGAAAGAAAGCAATTT 237446 30 100.0 38 .............................. CGGCTAACCGCATTATAATACGTGATGCAAGTGGCCGG 237514 30 100.0 39 .............................. GTTGATGAACATTCCATAGATAGTTTGCAATTTATGTGT 237583 30 100.0 36 .............................. ATTGGAGAAACTTTTAATAGAGCATAAAAGGACTGA 237649 30 100.0 40 .............................. AAAAAAGATATAGTTTTTTAGAAGTCTTGAATGATGAAGG 237719 30 100.0 40 .............................. TTTGATTGAGGATATATTCCTTGCTAATGATATAGCTTTT 237789 30 100.0 36 .............................. CCATAATCAGTAACTATTTCTCTGCTAGCATTTCTT 237855 30 100.0 41 .............................. TATTCCATTTTGTGTTTTGTATAGTTACCAAATCACCAAGC 237926 30 100.0 37 .............................. TTGCTTTGATGAGGTAGCACTATTTTTAGAAGTTGAG 237993 30 100.0 37 .............................. GTCACAATTTGGGCAATACCATGTTTCCATAGGCGTG 238060 30 100.0 36 .............................. AGGCTTGCCCAAAAAGCGGAATATTATTTGTACTTT 238126 30 100.0 36 .............................. TTTGCGGGTAAACAATAAGGCAGAAAACACAATAAC 238192 30 100.0 37 .............................. ATGGTGAAGTTATAGAAGATGATACTAGTAGCACTAA 238259 30 100.0 36 .............................. CATTTATTGCAAACTATGCACTTTCCTTTGCTTCAA 238325 30 100.0 38 .............................. AACTCTTCTAAAAAATCATTAAAACTAACTTTTTTTAC 238393 30 100.0 36 .............................. TTGTAATAACAATATAATGATGCAAATAAATAAAGC 238459 30 100.0 36 .............................. ATGAAGAAGCAGAGATTGACAAGCCAAGCTATGCAA 238525 30 100.0 36 .............................. TACCTTGGAACTGTTCGCTCATGATTATAATAATTC 238591 30 100.0 37 .............................. TAAGACTCAATCCAACTTTCCAAAAATTCACGCAAAG 238658 30 100.0 39 .............................. TGAAACCCTTTCTTCATTTTTGGCCAATGAGCTTCTAGC 238727 30 100.0 37 .............................. GTCGAAGAGGAGGTGGCGAATTGACGAGGGAAGAGCT 238794 30 100.0 39 .............................. GCAGCAAGTTTTGCGGCACCACTTTTGGCGATATTGAAT 238863 30 100.0 40 .............................. TGCCTATCCACTGTGGAAATGGCTGCTCTTCGGGCATTTC 238933 30 100.0 37 .............................. TGGAATATATGGTCCGGTATATGTTGATCTGTAGGAA 239000 30 100.0 38 .............................. CAGGACTATATTGGAAATATTCAAAGATGCACTTATTG 239068 30 100.0 38 .............................. TGATGTAATCATTGATTTCTTTAGGATTAAAACCACAT 239136 30 100.0 35 .............................. TCGGGTCATCAGACTGATCATCCAGTGTTGCCACC 239201 30 100.0 40 .............................. CACTAATGTTGGATGAATCATCACAGATACAAAATGAAAC 239271 30 100.0 41 .............................. ATAACAAGATTGAATTCAGTCAAAAGGAAATGGATAAGGCA 239342 30 100.0 36 .............................. TGAAGCTTGATGACATGAAGAATATCCTTAAAACCC 239408 30 100.0 36 .............................. ACTGGTACATGGCCGCAGTCTGTTCCTGTATGCTGG 239474 30 100.0 40 .............................. TGGACTACCAGACACAAAGAGATCGCGCCGATAAGGCCGA 239544 30 100.0 39 .............................. TTGTAAACACGCCCATCTCTAGTGACAGTATATGTCTTT 239613 30 100.0 36 .............................. TGGAGGTGTTGTAAATGGCATACAAAGGCCAACCCG 239679 30 100.0 37 .............................. CTTTGCACGAGTATGAAAACAGCCTCATCTTGCTCCC 239746 30 100.0 41 .............................. CAGAATACTACCTCTCCTTGCCAATCTTGTTTTAAACCATC 239817 30 100.0 35 .............................. CATGGGGAGTGCTGGGCAAGACTTCGTAGACGAAG 239882 30 100.0 38 .............................. GTTGATAATTGTATTTTTAATTTACTGTTTATCCTTGT 239950 30 100.0 36 .............................. ACGACAGACAGGATATAGAGGATTTGGTTACACGTG 240016 30 100.0 36 .............................. CTGAAAGTAGGAAGCCGACCGGCATAAACAAAGCCA 240082 30 100.0 37 .............................. AGGATAAAAGATAACTGGCAAGTGTTTCCTAGCAGGG 240149 30 100.0 38 .............................. CTATCTCCTGGTCGCCTTCAGCCAAGGCGAACATCCTT 240217 30 100.0 39 .............................. AGACATGGCATTGATTTCTTGGGATTCAGGACCTTTATG 240286 30 100.0 126 .............................. TGGACGACACTATCCCGGAGGAAAGAGAGACAGGCATGGCCATGGGCAAGGAGATGTTAAAAAGGTGCGATGAGCTCTGGGTATTCGGAGAGGTTATAAGCGAGGGAATGGCCTCCGAGATAGAAC 240442 30 100.0 38 .............................. TTATAAATGGGGTGAAATTATGGATCTTACGACAATTA 240510 30 100.0 36 .............................. CCAGCCTTGGCACCAGCTCTATTGGTATATATCCGG 240576 30 100.0 36 .............................. TGAATTGTCCTTGGATGACATCCCGCCATATTTGCC 240642 30 100.0 37 .............................. CCAGCCTTGGCACCAGCTCTATTGGTATATATCCGGC 240709 30 100.0 37 .............................. ATAATCTCATATTCTTTTTTCATAGTCTTCGTTCACC 240776 30 100.0 39 .............................. ACGACTATCCCGGGAGAACACCCGAGACTGCCCAATTTT 240845 30 100.0 42 .............................. ACCAGAGCAGGCGCGAAACCCGTAGTTGCTGTTGGCATTGCC 240917 30 100.0 37 .............................. TCGGCTGTCCTGGCTCGGGAATGAATTGAGAAGTGAC 240984 30 100.0 37 .............................. TATGCCTACAAAGTCTTTTTATCAAGTGCTATCCGCA 241051 30 100.0 39 .............................. TCAAAAGAGGAGAGAATATCAAGAACTGGCAAGGGATTC 241120 30 100.0 38 .............................. TCTACTTTGTCCCAGTCAATACATGCCCATATTTCATA 241188 30 100.0 38 .............................. ATAAACTTGTCAACCGATTCGCTAATAATACCTTCCAC 241256 30 100.0 36 .............................. GGCTCTAATGCCCTAAATTGGTCTAACCCGTTCTTT 241322 30 96.7 35 .....................G........ TCACAATCTTTTTTTGCGCAATCACTCTTGTCTGG 241387 30 96.7 39 .....................G........ GCCCTTGAATTCACTTTTGATAATGAATATATCAAAGAA 241456 30 96.7 36 .....................G........ GCTTTTCTTCTTTTGTCTTTATCTTTCTCTATCCCA 241522 30 86.7 0 .C.....A..............C......T | G [241541] ========== ====== ====== ====== ============================== ============================================================================================================================== ================== 63 30 99.6 39 GTTTATAGCCTACCTATAAGGAATTGAAAC # Left flank : AGTCATGTCTTTGGGCGAAAAAAAGACCCGCAACCTTTGCCATAATTTTTAGCTCAACTCCTTTTTTAAAGCATTTTCACAACTCGTAATAAATGTTATTACAATAGCTTACCTTCATTAAAAACAAGTTTATACCTGTAAATACATTAAATCAAAAAAAGGATTTTTTGCATTTAGCTTAAAGGGATTTAAGAAATTTTATTTTAATGAGAAACTGAACATTTATTGGAGGGGTTAAATATTAGAAGGTATTTTGATACTATTAAATTAGATTATATCATTATTTGGGATAAAATGATATTTTTTGACACTCATTTAATTTTGTCGTCGACCTCAAGTCGCGCAAAAACCCCTGGGGATCGACGACAACCAAAAATTACCTCCAAATAAAGAATATAACTGGAAAAGGAGGACTTTTTGATTTAATGTAGAAATTATTAATAGAAAATTGAACAAATTATTTTTCTCGCTCTTTCTTTATTTTTTACCCCAAATTACGG # Right flank : TAACACCGTATACAATATATTTGGTTTTTGATTTCCTAATGATGTGTATAATAGAAAATATGCGTTATTGTGTGGAAAAGTGGGCGGTCGATGACCGCCTCTACGTATTGGTAATTCATTATATATTGTAGGGAGGTTGCTGCAAGGTCTTCCAGTTTATACCATGCAAGATTGGTAATTTATTATATATTGTAGTGAGATCCTACTTTAATAAATCATTTATTGTAGGTAAGTCATTTGTTGTAGTGAAGGTTATACGTTGATAAATCATTTGTTGTAGGTAAGTTATATGTTAATAAATCATATATCATAGAGTAGGGGAGACCATTGGTCTCCCGCTTATATTGCACGTTATACACGTTATTGCCATTGAACTTTAACTGTGATTTTACGGCAAAACTGACTTTTTACGATAAATCATGATAGATTCCACTGTAGAAAGATAATTTCGAGCTAGAAATGCCGAAATATTGTTCCTGATTATAATAAGATACGCCATA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //