Array 1 27974-29770 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYOY01000017.1 Streptococcus salivarius strain UC3162 TZ99_contig000017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 27974 28 100.0 33 ............................ TGGCTTATAAGAGTCAATCACGCGCGTGATTTT 28035 28 100.0 33 ............................ CGGTAATGGGGTTGAAATGGTTGGTCAAGTTGT 28096 28 100.0 33 ............................ CAAGTCCTGCAAATAAAATCAGCGCGACAATTT 28157 28 100.0 33 ............................ TACTGTAAATTATCACAGTCTCAAGGAATACAC 28218 28 100.0 33 ............................ CATTTTAAAAAAATTGCAGACGGATTTTCAGGC 28279 28 100.0 33 ............................ CGCAAATACGACGAACAGCGCTGAACCGCTCAA 28340 28 100.0 33 ............................ CAAGTCGTTAATCTGTGCAATTTTTGAGACTGC 28401 28 100.0 33 ............................ TACTCATTGTCGTCAATGACACGCCCGAAGCCT 28462 28 100.0 33 ............................ TATTAAACAAGTACGTTTGGCTATTATGCTTGA 28523 28 100.0 33 ............................ TGAGTTCCGTTGAAGTGGCACGCCTTTGTCAGT 28584 28 100.0 33 ............................ CGTCAGACGGATATCGCTACGAATTCGACCTAC 28645 28 100.0 33 ............................ CTAACAATCTTGACGGATGATAATTATTATTCT 28706 28 100.0 33 ............................ CAGTCGAACGACCAACACCGTTTTTAAAAACTG 28767 28 100.0 33 ............................ CGAAAGGTGCGCAGTTCTTGCTCATCTTTACGC 28828 28 100.0 33 ............................ CGAACGCCGCTTATTTGCTCGTACGTTTGGCGA 28889 28 100.0 33 ............................ TGTGATGTTGTAATAGAGACCGTTTTGATTATC 28950 28 100.0 33 ............................ CAACCTCAAGAACCATGGTGTCACGTTTACTGC 29011 28 100.0 33 ............................ TGATAGGTGCGATGGCTATAATCGTATCTGAAA 29072 28 100.0 33 ............................ CGCAACAGTTTGATTAAAAAAAGAAAAGCACCG 29133 28 100.0 33 ............................ CATTGATAGCTTGCAAACGTCCACCCTTGGTTA 29194 28 100.0 33 ............................ CGTTTCCCACGCTCCAGACCAGTCACCTTGTAG 29255 28 100.0 33 ............................ TCCGGCTCATCGTCAAATGTGACTTCAAGATAA 29316 28 100.0 33 ............................ CCCGTTTCGTGACCACTCGTTAGAACTAAACTC 29377 28 100.0 33 ............................ TGAAGCCCCGGTTTACGACAAGCCAGAATGGAA 29438 28 100.0 33 ............................ TACTGGCTTTGGACAACCAGAAGAACAAAATTA 29499 28 100.0 33 ............................ CTTGAAGCGTTATTCCCTTCAGTTGGTGCTGGA 29560 28 96.4 33 ..........................G. GTTGTTTTGATAAATGTTGATTCATCTATCAAG 29621 28 92.9 33 T...................A....... TAGTTTTACGTCCTATCTCATGTACTTCTTCAG 29682 28 89.3 33 .C.................A...T.... TAGACTTCTTCGCTAGATGACGATTTACTTGTT 29743 28 75.0 0 ..........T...T.T.A.TA....T. | ========== ====== ====== ====== ============================ ================================= ================== 30 28 98.5 33 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : GAGAAAAAGAATACAATTATTGAGATTGGAGCAGTCAAGTTTAATGGACAACAAGTAGAGGAATTTAATGCTTTGATTAAGTATGAGGAGAAATTACCTCCTACAATTTCTAAATTGACAGGAATTTCTAAAACCTTATTAGATAAAGAAGGACGTGATTTAAAAGAAGTACTTTCTGAATTCTTATTATTTATTGGTGATTTAACTATAGTCGGCTATAATATCCATTTTGATATTCAGTTTATCAATAATAAACTGAATAAATTAGGTTTACCCTTATTAATAAATAAAACTCATGATATAATGAGATATGTCAAGAATGAGAAGTTATTCTTGGATAATTATCAATTGCAGACTGCCCTAAAGGCATATGGGATCGAGGATCAAGTTCCTCATAGAGCGTTGAAAGATGCTAGACTAATCTATCATTTATCAACTAAAGTAAATAAATTCTTAGCTAGAATGAAAGAAAAGTCTTAATTTCATTGGGACCTTTTAGT # Right flank : CTATTAATTAGGAAACGCCTGACTTTAGCTAACAGTATGGTACAATTTAATTGAATTAAGAGTGAATTTTTTGTTTTTTTATGGAAAATAATCAATTTACATTTATCCTATAGTTAATTGTTTGCACGTAGATCAGATGTAATCAAGGATTGTTATTGCTCGATTTGAGAATAGGAGCATTTGTTATTATCTCTAATTGTACAATTGTTAAAAAAACAATTAATCTATTTCGGGAGTTTTAAAGATTGTAGATATAGAAAGTAGTAGTTTGATGGAGAAACAAACAAAAGTTTAATGCTATCGAATGACATATGATTATGGCATTAATCCGTTTGTATTTACTGAAGATTATGAATCCACACCAGATTTGTTGACTGAAGATGGCTGTATGATTCAATACGGCAACATCTAAAAAAGAATTGGGCTGATAGGATTAATTCTGGTGGTATTGATGCTTATATAATGGCAATTGCTAGGCATTCAAATGATGGTGGTAAGTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //