Array 1 60869-61538 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYMF01000020.1 Photobacterium aphoticum strain DSM 25995 CFSAN065511_20, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 60869 35 100.0 36 ................................... TCCTTATGACTTGATCGGATTTCTTATCCGCACGGA 60940 35 100.0 36 ................................... CACATTCATGAATTTCATAATCAAACATCCTTAATT 61011 35 100.0 38 ................................... AAGTCTGAATGAACAGACGCATCCACATCAGTAATGTG 61084 35 100.0 37 ................................... TTAACACCATGTGACACATGGGTGTTGAACAGGACTT 61156 35 100.0 35 ................................... GTAGAATTTTGCATGGTCGATAGCTGTCTTATTGT 61226 35 100.0 35 ................................... TGCGGTTATCCGCATTTTTAGTAAAAATTTACCGT 61296 35 100.0 36 ................................... TTCGCTGTTTGTTAGCATGCATTTTCTCACGAAACT 61367 35 100.0 33 ................................... AGTTTGTTGAAAGTATCATCAACATACTCTTTG 61435 35 100.0 34 ................................... ATTCTGTATTGGGTGCCCACTAAAATTTGATAGT 61504 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 10 35 100.0 36 CTTTCAGTGCGCTTGGCCGTTTAGGCCGTTGAAAC # Left flank : ACACACCGCATCACTGACACAAAAGGAGCTGAACCATGTACGTTTACCTTGCTTGCTTTGATATAGAAGATGACAAGAAACGCCGTCGCCTCAGCCGGTTACTGCTGGGGTATGGTGAGCGTGTACAATACTCGGTGTTTGAGATCACCCTGAGGGATAATAAAGCGTTAACCACGCTGAAAAAACGCTGCAAAAAATACGTGGATGATACAGACAGTTTGCGCTTTTACTGGCTGCCTCACAATGCCCGAAAAAAGTCGTTTGATATATGGGGAGAGCCTATTGCAACTTTTCCACAAGCTGAAATACTATGAGTTAGCGACTGAATCGGTTCTTTAACAGCACGGGCATTTTTATCCTTATTAACAACCCATTAGTGATATAATCATAAAAGGTATCAACAATGTGTGTTATGCAAAAAGGCCGGTGCTTGTGGATAACTTTAGGGCGGAGAAAACAGGGTGCTATCTTATTGATGTGCGTACTGAAATAATGCTACC # Right flank : CAAAGAAGGAACTGCGAACTTACATTCAGAGATCATCCTTTCAGTGCGCTTGGCCGTTGGCATGGGGCATTCCCCGCTTTACAATGAGAAAATAACGGCACATAAAAGGATAAGACGGTGAGAGTGTTTTTTGATTCTGAATTTACCGCACTGACCCAATCGGCACGTTTACTGAGCCTGGCCTTGGTGGATGAAAACGGACGCACATTTTATGCCGAGTGCATGGAGGCAAAAACCTATACCCTAGACCCGTGGTTGCAGCAACATGTGCTGCCCCATATGCAATGGCTGACCCAACCAGACAATCAGGCAACCTTTCGCCATGATGCGCTCAGCACCGCACAACAAAGTACATGGATATTTGACACCGAACCGCACATTGCGGCAGCGCTGACAGAGTGGTTAAGTGTGTATGATGATATAGAGATGTGGGCTGATTGCCCGGCATACGATTGGGTGCTATTTTGCCAACTGTTTGGCGGTTCACTACACTTGCCCGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGTGCGCTTGGCCGTTTAGGCCGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 62492-62879 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYMF01000020.1 Photobacterium aphoticum strain DSM 25995 CFSAN065511_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 62492 35 100.0 36 ................................... TTTTTTCTTCTCTCTTCTCTGTCTCTCTTCAGTCCT 62563 35 100.0 37 ................................... TTACCGCTTGGTTTACGACTAACTTAACAGTCATTAT 62635 35 100.0 37 ................................... TTTGCATACTCAAACATTCCGCTGTCGATGTTGTTTT 62707 35 97.1 32 ..........T........................ TAATACCCCACGCCATCAAAAACAGACTTTAG 62774 35 100.0 34 ................................... ATTACCTGCTAACTTAAAAAATAATTTGTTATTC 62843 35 97.1 0 ..........G........................ | GC [62874] ========== ====== ====== ====== =================================== ===================================== ================== 6 35 99.0 35 CTTTCAGTGCACTTGGCCGTTTAGGCCGTTGAAAC # Left flank : GGGTGCTATTTTGCCAACTGTTTGGCGGTTCACTACACTTGCCCGCCCCGTTAACCTATATCGTGCATGACTTTTCAACACTGTTGACCTTGCAGCAGATTGACCCGCTCACCCCACGCCAACAGTTATTGCCCGCTCACTCAATGATGGCAGATGCCGGTCAACCCCATAATGCTTTGTATGATGCCCAGCTGCTAAAAGCCTGCTTTACCCATTGGCAAACACACGGCCGCTTTGTCTCACAATGCACAGTGAAAAAACCGTAATCCGCCAGACACCCGTTGCAACGTTTCCACAAGCTGAAATACTATGAGTCAGCGACTGAATCGGTTCTTTAACAGCACGGGCATTTTTATCCTTATTAACAACCCATTAGTGATAGAATCATGAAAGGTATCAACAATGCGTGTTATGCAAAAAGGTCGTTGCTTGTGGATAACGTTAGGGCGGAGGAAACAGGGGGCTATCTTATTGAAGTTCATACTGAAATAATACCACCA # Right flank : CGCACGGGAACAATCACACATTCACCCGCCAATGACATACGGTGTGTCGATAAGATAGAGACAAAAAAAGGCCACCTTGCAAGGTGGCCTCAATCCATATCAATAATGCTATTCAGTTATACGTGATCTTTTTCTTTTCGAGGTGGTGTTTCTTCTCTATGTGGAGACTCAGAAGGAAAGTCTTCTGCTTTCATTTTATTCTTCACAATTAAGGAAGGGTCACTGTTCGATGCTTCCCCATTTGTCACTGTCTTTTTGATTTTATTTAACACATGATTTTCCTTAATTGTTTCATGCATAGATTCAATTCTATTCATAACTAAAGCAATAATCTCATCTTTCATACCAAGGTAATTCATTACTTTAATTGTCAAAACCAAAAACACCACTGACAAAGCAATATTAACCCCAATATGCAGACCATAGAATGTGGCTTTTAATGCCTCTGCAAACAACATGGCTATTGCTAATATTGCAGCTGCTGTTGATAACCTTGACAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGTGCACTTGGCCGTTTAGGCCGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //