Array 1 151505-152447 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVFT01000009.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033893 CFSAN033893_contig0008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 151505 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 151566 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 151627 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 151688 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 151749 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 151810 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 151871 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 151932 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 151993 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 152054 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 152115 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 152176 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 152237 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 152298 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 152359 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 152420 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 168579-170421 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVFT01000009.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033893 CFSAN033893_contig0008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 168579 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 168640 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 168701 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 168762 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 168823 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 168884 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 168945 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 169007 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 169068 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 169129 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 169190 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 169251 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 169312 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 169373 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 169434 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 169495 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 169556 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 169617 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 169678 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 169740 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 169843 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 169904 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 169965 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 170026 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 170087 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 170148 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 170209 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 170270 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 170331 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 170392 29 96.6 0 A............................ | A [170418] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //