Array 1 21839-21443 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018047.1 Streptomyces niveus strain SCSIO 3406 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21838 29 96.6 32 ............................C ACCGGGTCCGGCTGGCAGGTGATCGCCGACGC 21777 29 100.0 32 ............................. ATCACCGAGAAGCACCTCTCGAACGGGGCGTT 21716 29 100.0 32 ............................. TACAGTTCTCACCGGAGCAGCTCCTGTCTCCA 21655 29 93.1 32 ...............G.T........... ACACCAGCCTGATGCCGACCCACGCCGAAACC 21594 29 96.6 33 ...............G............. GTGACGTAGAGCAGGCACCCGCTGGGCGAACTG 21532 29 89.7 33 ...............GT.......A.... TCCATTTCTACCGTGTGGTTCACCACCGGGCCC 21470 28 86.2 0 ............G..GT...-........ | ========== ====== ====== ====== ============================= ================================= ================== 7 29 94.6 32 GTCCGGTCCGTACGCACGGGGAGCGACCG # Left flank : CCAAGGTCCGGCAGAAGGCCGGACTCAACCGCTCCATCCTCGACGCCTCGCCCGCTGAAATGCGGCGTCAGCTCGACTACAAGACCCGCTGGAACGGATCACAACTCGCCGTGTGCGACCAGTGGTTCCCCTCCAGCAGAACGTGCTCGGCCTGTGGGTGGCAAAAATCAAGCCTGACCCTGGCCGAGCGTGTGTTCACCTGCGGACAGTGCGGGCTGGTGATCGACCGGGATCTCAACGCGGCCCGGAACATCGCCGCCCACGCTGTTCTCGTGCCGCCAGGCACCGCCGCCCCCGGTCGGGTGGAGGCGTCAAACGCCCGTGGAGCAGCTGCAAGACCCGCCACCCCTCGGGGTGGAAGGCAGGCCGCGCTGAAGCGGGAAGACACCGGCCCACCGCGGCCGGTGCCACCTCAGCGGAGCGATCCGCTGACGCTCTTTACCCTCGACGTACCGGACCAACAAACGGCAAAGCGGCCATGAAACCGCAGGCGGCGAAGC # Right flank : ATTTGGGGTCTGCTGTTCTCCCGGTGCCATCCCTGTCGTTGCGGGCGTGCATGCGGTGGTAGTTAGGCGATGTCCCAGCGGTTGCTGTCGTTGGTTTGTCCGTGTGTGTTGCGGGCGGTTTCCAGGAGTCGCTGCCAGGATGTGACGTGTGGTCGTCGTCGGAGCAGCGCGCGGCGTTCCCGTTCGGTCATGCCGCCCCAGATGCCGAATTCTTCGCGGTTGTCGAGCGCGTAGGCCAGGCATTCGGTACGCACGTGGCAGCCGAGACAGACGGACTTGGCCCGGTTCTGCTCCTGTCCCTGGACGAACAGCGAGTCGGGGGCGATAGTTCGGCAGGCCCCCTGTTCGCTCCAGTTCCACGGTGCGTTCACAGCGTTTCCTTCCGCGGGGGAGTCCGACGCTATAAAACGTTCTATCGTTGTAACAGGCCGCCAGTGTAGGAGTCACCCATTCGAGTGGTGATCCGTGCCGCGTCAAGTCGGGGCTTTTCAGCGCTTGTT # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGGTCCGTACGCACGGGGAGCGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 3582072-3583717 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018047.1 Streptomyces niveus strain SCSIO 3406 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 3582072 29 100.0 36 ............................. GCGCGACGGACGCGCCGCCGGTGAGCACGCGCAGGG 3582137 29 100.0 37 ............................. TCCCGTACTCCACCCAGCGGGCGTAGTAGGCCGTGTT 3582203 29 100.0 37 ............................. GGCGCGTGATCGGTGTGGGTCTGCACCTGCTCGTGTA 3582269 29 100.0 37 ............................. TCGCGAGGTCGATCTGTACGGCCTCGGCGAAGCCGCG 3582335 29 100.0 37 ............................. GCGCGGAGCTGCGCCGGGCTCTTCTGCTTCAGCGCGT 3582401 29 96.6 35 .......A..................... GCCGGTGTGGATCTCCTAGGCGTGCAGCGCGCCGT 3582465 29 100.0 37 ............................. CGCGGGCCCCCTTCCATGGCAATGCGGACGCGCTCTC 3582531 29 96.6 36 .........A................... AGCCCTGGTGGTTCGCCTCCCTGCCGGGGGCGTTCT 3582596 29 100.0 35 ............................. GAGGTCGGCCCGCAAGGTCCTGCGGGGGAGCAGGG 3582660 29 100.0 37 ............................. CAGCAGGTGGGCGGCGTTGCCGAGCTGCCTCAGTCGG 3582726 29 100.0 34 ............................. AGGCAGCACCACACCGGCCGCCCTGCCAGCAGAA 3582789 29 100.0 36 ............................. GACCCCTGATGGCTTCCGTACAGCTTAAGGGCGCGC 3582854 29 100.0 37 ............................. GCGCTGATGGAGGTGCTCGCGGTCACGGGTACGCCGT 3582920 29 100.0 37 ............................. GTGAGGAGTTCCTCGCCACGATGATCGGCACCTATGA 3582986 29 100.0 36 ............................. GGGTGACGATGCCGTGGCACCGCCAGCAGTACCAGC 3583051 29 100.0 36 ............................. CCACGAGCCCGGGACCGACCCGTGCGCCGGGCTCCC 3583116 29 100.0 38 ............................. CTGCCGAGCGCCGCCGCGAGTACATCGTGGCCGCTCTG 3583183 29 100.0 17 ............................. CGATCGCGGCCGTGGCG Deletion [3583229] 3583229 29 100.0 42 ............................. CCCGGCGACGCCGGCGCTGGTGCCGAGGCAGATGCCGCACCA 3583300 29 100.0 38 ............................. CATGAGATTTACCGGGTGCTGCAAGGCATCTGGCACTC 3583367 27 89.7 34 ...............--..........C. CCCCGGCCGCGACGACGTACACGGTGAAGAAGGG 3583428 29 96.6 37 ......................C...... CCGGGCGCGGCGAGGAGGTCGACCTCGGCGTCATCCA 3583494 29 100.0 35 ............................. ACCGCCCGGTTCTCCTTCGGGCTCGGCAACCTCAC 3583558 29 100.0 37 ............................. CTGATCCCTGCCCCCGCCAGGAGACAGCCAAGGTCCC 3583624 29 100.0 36 ............................. CCGGGACCTGGTCGTGCGGGTGCGGCGCATCTCGGC 3583689 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================== ================== 26 29 99.2 36 GTTGCGAGCCCTCCAGGGCTGATGACGAC # Left flank : GCATCGTCGAGGAATACGAGAACGGCAACTCGATCGAAGTGATCTGCGCTCACGACGCGGACAAGCTCGAATGCCTCATCCAAGGCGTCGAGTACCGGGAACAGGGCTACGCGAACGCCCAAAGTTGGATCGACAGCAGCCTCCAGAAACTCAAGACCGCATCTGCCCAAGAACTGGCCGAAGCCGCGCTGAATATGACATCGGTGGAATGGCAGAACACCTACCTGCCCTGACGCACCCCTGCGAAGAGCGGCGTCCTATGGAGTGTCGGATCCAGCGCCCACCCGCCACGCTGGCCATCTCCTTCCCAGTGCCAGCACGCGCGTGATCTTTACCGGAGGCTGCCAGTAGTCGGCCCAGGGGCTGATGACGATTCGTGATCACCAAAATCTCCCGCTATTGCTGCGGGTGGCCACCAGCCCACTTGGGTCGACAACCCGTCTGCAGGGCAGAGGAATTGGCCGGGGCGGGCCTGTTAGGAAGGGCCCGCTACTCCCTAT # Right flank : CTCGACGCCATGGCTACCGGGTTAGCCCCGAGGAGCAACGGCCTCGGATCCGCAGGTGCCTCTGTGCGGCCGTCCCTCAGAGAGGGCACGCGAATCATGCTGCTGGAGGTGGGTCGTACGACCCCGAAAGGGCGATGAAGGGAGGTTCACGCGAGTAAAACGCGTACGTTGTGACCCCTTGTCGGGGTGATGAGTGGGTATGAAGGTTTCAAGGTGCACGATTTGATGGGGCGTCGGCTTTCGCTGTGGTCAGTTGCGGATCTTACCGAGGCCGTTCTCCTCGTCGTATTCGGCGTCGATGGTGTTGACTTTGAGCTGTTCGTTCCAGGTCGTGCGGGTGTTGCCTGCGACGGGGATGAGTAGGTCTTCGGCCAGGAGGCGGCCTGGCCGGCGGCCGTTGTCGATGGCGAGGCGGCGGGCGTATTCGGTCTGGTCGGTGATGAGGACGGCTTCCTTGCCGTCGAACATTGCGTCGAAGTCTTCCTTGTCCAGGGATCGGT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAGCCCTCCAGGGCTGATGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 3593464-3590767 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018047.1 Streptomyces niveus strain SCSIO 3406 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 3593463 29 86.2 37 AAC..G....................... CCGAGTCCGGCTTCCCGGTCGTGCTCAACCACCTGCC 3593397 29 96.6 36 .....G....................... CGGCGGCGCCGGGCTCGTCACCGTCAGCATGTGCGG 3593332 29 96.6 36 .....G....................... GAGATCACCCAGGCTTACGGCAAGGACGCCGGCAAA 3593267 29 93.1 35 .G...G....................... TCCTCCGCACCTTCGGGAGAGGCAAACGCGACTGC 3593203 29 96.6 35 .....G....................... CGGGGCCTCACCCACGCCCAGGAGGAACCGTGGAA 3593139 29 96.6 38 .....G....................... CACCGGCTGCTCGCACTCGGCGTCACAGGCCCGGACGG 3593072 29 100.0 35 ............................. GCGCGCGTTGGCCTCGTCCGTCGCTTGCTGACGCG 3593008 29 100.0 37 ............................. ACGCGGCGACGTCGTGGCGGAAGGCGTGGCGGTACAC 3592942 29 100.0 35 ............................. GTGCATGAAGTCTCCACGGTGGTCCCCTCCCGCAC 3592878 29 100.0 37 ............................. GCGAGTGGCAGGGCCGCCTCGACACCGCGCCCGCCGT 3592812 29 100.0 35 ............................. GGCAACCTCGCGGGCCATCTCTCCGGACCCGGCCT 3592748 29 100.0 36 ............................. ACGGGAGCGATCATGGGCTCGTCTCCACGGGTACCG 3592683 29 100.0 36 ............................. CAGCCGGTTCGCGCTGGTCCACCGGCTCACCCCCTC 3592618 29 100.0 36 ............................. CGACGTGCGGGCCGTCAACGTCACCCGGACCACCAG 3592553 29 100.0 34 ............................. TTGAGCCAGGACGGAGACATCCCCATGAGCCCGG 3592490 29 100.0 36 ............................. CATGTCGGACGACCTGCGTACGGCCAACGAGGCGCG 3592425 29 100.0 36 ............................. TGACTCGGCCCCTGAGGGTGAGCTGGCGTTCGCCAT 3592360 29 100.0 37 ............................. CCGGCGATGCGGGCCAGGTCGTCGCTGAAGTTCACGC 3592294 29 100.0 37 ............................. CCCGAGCCGGAGCCGAGTTCGGGCCCTGGCCCCCTGG 3592228 29 100.0 36 ............................. GACCGTGGTTTTCTCCCACCTGGCCCACCAGATGCT 3592163 29 100.0 36 ............................. GTGGAACGCGCAGGGCAGCGTCACGGACTGGCGGTA 3592098 29 100.0 37 ............................. CTGAGGGGCGGGCCGCACTGCGCGCTGCCGATCACCT 3592032 29 100.0 35 ............................. GCGGCGACGTCCTGGCGGAAGGCGTGGCGGTTTAC 3591968 29 100.0 35 ............................. ACCGTGCAGCGCAGGGTGCAGCGGGCGTTGGCCAT 3591904 29 100.0 34 ............................. GGGAAAGCAGTCGGCCCGCACCCTGGCCACATGA 3591841 29 89.7 36 .....G................C...A.. AGCGGTACCAGTCGCTGGGCATCGACCTGAGCAACC 3591776 29 96.6 36 .....G....................... CATGGCCATGGTCGCGTCCGCCGCTCTCGTCAACCG 3591711 29 96.6 35 .....G....................... CCCGCGTCCCTGGCGTACGTGATGGGTCTGTACGC 3591647 29 93.1 39 .....G......................T CGTCGCGCGTGACGAGGGCCCGAGCATCGGCCGCGTGTA 3591579 29 96.6 35 .....G....................... CTCGCGGTACCCGGCAGCACCCTTGTGCTTCCTCG 3591515 29 100.0 37 ............................. ACGACCAGGCGGTGGTCCGGCGCCTCCGACGTCTCGG 3591449 29 93.1 36 .....G.................C..... GGCCCTGCTGTGGATAGCCGAAACGCACGCGGTCAT 3591384 29 86.2 37 ....TG.............AA........ GCGGGACCGGGGTAGGTTTCGAGGGGGCTGGCGTGCG 3591318 29 96.6 36 .....G....................... CCGGGCCCGGCTTCGCATGCAGTTCGCTCAGGCTGA A [3591304] 3591252 29 96.6 37 .....G....................... AGCTGGCCTCCGGAGGAGGCTGGCAGGCGGTCGTCGC 3591186 29 93.1 36 A...........T................ TCCCATCGCCGTGGCGTCGGCGCCCCGGTGGGACTA 3591121 29 96.6 37 ............T................ CCGTGGCCGCATCGTGCCAGCACCGCCCCGGAGGCCC 3591055 29 93.1 38 ...............A........G.... CCTGCTCTCCGCGGCACCACGGTCCGGCTCCGTATCCG 3590988 29 89.7 35 .....G.......GG.............. GTGGACACGTGCCGAGGTGATGCCGGGCAGCGGAT 3590924 29 93.1 35 .....G......T................ CTGCTGGAGGTGGCGCGGGGGGTGCTGCACTGGGG 3590860 29 93.1 36 .....G....T.................. TTATACACGCCATTTCGATCTTGAAACTCGGCAGCA 3590795 29 82.8 0 ..............T...T.....CA..T | ========== ====== ====== ====== ============================= ======================================= ================== 42 29 96.5 36 GTTGCAAGCCCTCCAGGGCTGATGACGAC # Left flank : TCATCCCGCTCCCCTCGCGTGGGTGTACTCCGTCAGCTGGTTCACGGTCCGGCGGGCGGTCTCGGCATCGCGGTGGCGGAGCAGGTCGGTCGCCTTGCCCAGCCTTCTTGTGACGCGGCAGGATACGACTTCCTCGGCGAGCCGGTAGATCGCCTGCGGGTTCTGCGAGGTCCTGGAACTCCTGACCTGGGGTGTGGCTGGTGTGGACGGGACTTCTGAACGGTGAAGTACGACTGCGAACGCAACCAGGACTGCTACCACGGAGCGGGGGTGGCCGAGGCAGATCGAGCGGTGGCCAGGCCGAACGGATCCCAGATCCGGCGGGTGATCGTAGGTGGTGGGCGTCACCGTTGTTCTCCTCCGGCGTTGCACGCGAGCTTGGCACCGGGAGGAGCAGTGAGACAGATGCCACGGCGGTGAAGCGTCGTCGAGTTGGAGGCGGCCCTTCTGCCCAGCATGTCCGCGAAGGTGTCGGACTTGAGCGGTGACATGGCTGTCGC # Right flank : GAGGCGCTCGTGGGTCCGGCGTCCCAGTCGGCGAAACTGCGTACGGCAAAGCTCTTCCGGGATCAGAGTCCCGTGCGTACTCAGACGGCAGCACCGTAGCGTCGGGGGTCCGTTGTCCGGGCGATGAGTGGTGTGTGGTTTTCAAGTCGTCGTGCACTTCCGGGGCCTTCCCGGCGTGACCTCTATGGACTCTACATCTGGTAGTCGGGATCTTTCTCAGGGTGCTTATATCTGTCTTCTTTTGCTTGCCCGTTGATCGTTTATGACCTGTTGTCAGTGGCCCCTGGTAGACCAGAACAAGAGATTCCAGTGCGGGGATTTTCGTGTGATAGAAGTATCTCCGCAGTCGGCCACTGGAAGTAAAACTCGTACCGACATGACGCATTCTGCGGGCGCACCCGTGGCCCGCTGACCTGCAGGAAGGGAGGAGACGTGCGCTTACGCGTTCACGTCAGAACTCGAGCGAGAGAGATTCCTTGGGATCAGGTCATCGCGCCTGG # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGCCCTCCAGGGCTGATGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [36-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 4 7399392-7394601 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018047.1 Streptomyces niveus strain SCSIO 3406 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 7399391 28 100.0 33 ............................ GAGGAGGGAAGACCCGTGAACGAAGACCCGGAT 7399330 28 100.0 33 ............................ GCGGAGCTGAAGGACACGGTGGAACCGGAGCGG 7399269 28 100.0 34 ............................ AGAGGCCGACCGACTCTGACCCGGCAACCACTTG 7399207 28 100.0 33 ............................ CCGGGCACGTTCTCGATCATGAAAAGGGCCCCG 7399146 28 100.0 33 ............................ GACGGCGCGGAAGAACTACCCGGCGACGCTGCG 7399085 28 100.0 33 ............................ GGGCTGGCACGCGCACGAACTGCCCATGCCCGG 7399024 28 100.0 33 ............................ GCCGAAAGCGGCTGCCGGGTCCGGCGCCACGCC 7398963 28 100.0 34 ............................ CCCCCCGGCGGCACAGCGCGGCCAGGGTCGGGAC 7398901 28 100.0 33 ............................ TCGCAAGCGATACCTGGCCGTTCGAGCCTGGTC 7398840 28 100.0 33 ............................ GACCGTCTGGCGGTCCATGCCCGTCCGTCCCTC 7398779 28 100.0 33 ............................ CATGTACGACCCCGAGACACTCCCCGCCGTCGC 7398718 28 100.0 34 ............................ ACCAGACGCCCATCATCTGACTGGCGTACTTGGC 7398656 28 100.0 33 ............................ TTGCTTCGGCGGCGGCGCGTTCGGGTGCCCTGC 7398595 28 100.0 33 ............................ CTCCTGGGGCTCACGCTCCTGCGGCACACCGGT 7398534 28 100.0 33 ............................ GTCTCAGCGAGCAGCGTGCGTCTGCTCCCGCTG 7398473 28 100.0 33 ............................ GCTGCTGGACACTTTGTCCAGCGAGTGGGATGG 7398412 28 100.0 33 ............................ GTCAGGTGATCCGACACGAAGTCCCTCGGGTGG 7398351 28 100.0 33 ............................ GTCGTACCCGGCGACGCTGCGTCGGCGGGCAGT 7398290 28 100.0 33 ............................ CTGGACGGTGTGGCCCGCGTCGGTGTCGGCCGG 7398229 28 100.0 33 ............................ CTCGCCCGCGGGGACCTCAAGTCCGGCCGGGGC 7398168 28 100.0 33 ............................ GCCGTCCTTCACCGTCCGAAGCACCCGCACCCG 7398107 28 100.0 33 ............................ CTGGCAGTCGCGCTTGAACTTGGCGTCCTCGGC 7398046 28 100.0 33 ............................ CTCGGTGCCCTCGCATGGGTCGTTCACGGCACC 7397985 28 100.0 33 ............................ GCCACGCGGCCAGGTAGGACTCCGAGTAGAAAT 7397924 28 100.0 33 ............................ GGGTCGGACGGGGTGGTGGTCGACACGCGTGTC 7397863 28 100.0 33 ............................ CTGTGCGGCGCCAGCACTGTCTTCTGGCCCGAA 7397802 28 100.0 33 ............................ CCAGCGGGTTCCCGCCCGCCAGTCAGAGATTCA 7397741 28 100.0 33 ............................ GTGGCTCGGCAAGTAGCCCGCGCAGCGAGAAGC 7397680 28 100.0 33 ............................ GTCGTCCTCGTCGGTGTACCGGAACGGCTTGGG 7397619 28 100.0 33 ............................ TCCGGAGATTCCGGAATTCATTTGTCGGGCTGC 7397558 28 100.0 33 ............................ CGGTTAGCGGGGTCCCTGCTAACACCTCGCTGT 7397497 28 100.0 33 ............................ GATGCCGAGCGCCCTGTCCCGAAGGTCGGTAAA 7397436 28 100.0 33 ............................ CTGTGCGACCGGTGGGGCATCCCCCACAGCCAG 7397375 28 100.0 33 ............................ CCCGGCGGCGGGTTGGGGGTCGTCCTGTCGGGC 7397314 28 100.0 33 ............................ GCCGCCCACGCCGACGACCGGTACTGGGAACGC 7397253 28 100.0 33 ............................ TGCCGGCTTCGGTGATCTGCTGGGCGTAGTACG 7397192 28 100.0 33 ............................ GCGACGGGGCTTGAGGTCCTGGTCCGCGTACAC 7397131 28 100.0 33 ............................ CTGACCGAAGAACTCATCGAGCTGGAACGCGCC 7397070 28 100.0 33 ............................ CGCGGCACGGTTCGCAGAGCGGTTCGCCTCGCC 7397009 28 100.0 33 ............................ GCTGGTGATGGGGTGGTAGTAGGCGGGGGGCAG 7396948 28 100.0 34 ............................ TGGCCCAGGTGCTGGCTTTGTAGTCGGCGAGGGC 7396886 28 100.0 33 ............................ GCGGCACGGCCGGATGCGGTCCCTCCTCAACAG 7396825 28 100.0 33 ............................ CTGATCCCGGACCCCTGCCATCGTCGGCATGGC 7396764 28 100.0 33 ............................ GTCAGCGTGGTGTCGTCTCCGTCGGCCTGGGCG 7396703 28 100.0 33 ............................ GTGCTCTCCAGCCGCGAGGGCCGAACAGAGCGG 7396642 28 100.0 33 ............................ GGCACGAGGGTGCCCCTCCGATGCTGGCACCGG 7396581 28 100.0 33 ............................ AGTCGGTCCGGCTCCAGCAGCTGGAGCGCCCGG 7396520 28 100.0 33 ............................ TTGCTGGACGTTGTCCGTGGTGGACGGGTCGGT 7396459 28 100.0 33 ............................ GCGCCTCGGCTACCTGTACCAAGAGCCGGACGG 7396398 28 100.0 34 ............................ ACTGGAGATCGCGCAGGACGAACGGACCGAGGAC 7396336 28 100.0 33 ............................ GGCTTAGGGCGTGCTCGGTATCGACGGTCCACG 7396275 28 100.0 33 ............................ GCGTGGGCGCGGCTCGGCAAGGCCCTGCGCACC 7396214 28 100.0 33 ............................ GACGCAGCGCGAACGCTCTGTGAGCAAGGCCGG 7396153 28 100.0 33 ............................ CGGGAAGGGTGGCGTGATCGAGGCCCGCGAGTT 7396092 28 100.0 33 ............................ GCGCAGCCGGGCCGACCGCATCTTGCACCGACT 7396031 28 100.0 33 ............................ GTGGAGGCGCAGGACCCCGGCACCTCCCTGGAA 7395970 28 100.0 33 ............................ TCGTGTGCGGGGGGATCGCCGCCCCCCGTGGGG 7395909 28 100.0 33 ............................ GGCCCGCACCGTAGAGGTGCGGGCCTTCGCCAG 7395848 28 100.0 33 ............................ CTGCGCACCATGGCAACGTGGCCGGTGCTGGTC 7395787 28 100.0 33 ............................ GCCGCATATGGGGTACGCGACAGGTCAGACGCA 7395726 28 100.0 33 ............................ GGCCCGCACCGTAGAGGTGCGGGCCTTCGCCAG 7395665 28 100.0 33 ............................ CTGCGCACCATGGCAACGTGGCCGGTGCTGGTC 7395604 28 100.0 33 ............................ GCCGCATATGGGGTACGCGACAGGTCAGACGCA 7395543 28 100.0 33 ............................ GGCCCGCACCGTAGAGGTGCGGGCCTTCGCCAG 7395482 28 100.0 33 ............................ CTCTTTCTTCGGCGGCTGCGGGTTGTCGCGGTC 7395421 28 100.0 33 ............................ GTCGCCGGCAGCGTCTTCAAGGGCTTCCTCGAC 7395360 28 100.0 33 ............................ TGAGCGCCCGGTTGGTACTGCACCGGGTCGCCC 7395299 28 100.0 33 ............................ GCCCCCACCTCCCGCCGGTTGGCGAGGGTGGGG C [7395294] 7395237 28 100.0 33 ............................ GCAAGGCGGGGTTTTCCCCTTTTCGTGGATAGC 7395176 28 100.0 33 ............................ CGGGCCGTTCCATTCGAGAGGAGCACGACCCTT 7395115 28 100.0 33 ............................ GTCCTTGAGCGCGACCAGCACAGGCTGGGGGTG 7395054 28 100.0 33 ............................ AGCTCGACAATCACCATTCCGTTTCCGCCCACC 7394993 28 96.4 33 ..........................T. GTGGGCGAGGACGACCCGCGATGTCTGGGTGGT 7394932 28 96.4 33 ..........................T. GTCGTGGAACGTGATCGGGATCAAGTCCGCGTC 7394871 28 96.4 33 ..........................T. GCCTCTGGAGCACGCTCGCGTGCCTCGAAGACC 7394810 28 89.3 33 .C...............A........T. GTCGGTGGCGTACGACCACAGTTCAGTGATCCG 7394749 28 96.4 33 ..........................T. GCGTCGACCCCTCAGGAGTGGCGCTGGTCGGCC 7394688 28 89.3 33 ...................A...G..T. GTCGGCAACGGGGTGCCACCATGAGGACAGGTT 7394627 27 92.9 0 ........-.................T. | ========== ====== ====== ====== ============================ ================================== ================== 79 28 99.5 33 GTCGGCCCCGCGCCAGCGGGGGTTGCCC # Left flank : CCGCCGCACGGATTGCTTCCGCGCCCTTCGGCCACATCCGCTGGAAAGCAGGCGTGGCTTTCCCACAGTCGTGCACACCACACAACCAGGCGAAGAGCCGGCGCCCCTTCCCCGCGCCCCCGGCGACGCCGTCCAGCATGCTCTTGGTGGCCGGTGCCAGAAACCCTTCCCACAGACGCTCAGCTACCGCAGCCGTGTCCAACAAATGAGACAGCAGGAGATTCATCGTCCCGCCGGCCTTCTCCTCGGACTTCCCCCACAACACACCGAGAGCCCCAAGGATGTGCCGCCCGTCGACAGGTAAGTGACTGCCAGTCATGCCTGTGATCCGTTCTGTAAGCTGAGTTGAGAGCCTAGACGGCCCCACTGACAACGCTCCGAATCGGAAGCAGATGCCCCAGCTGACGCTGTTGCCGAACGCGTCCTTGATAAGCTCCGGGACCGCGATCCAACCGAAGCAAAAATCAATTACTTGCGGGTAGGGTCGCAGGTCAACAAGA # Right flank : GGTGCACGCGGGTGCCGAGATCCCTGCGCCCGCTGTACGCGGCGAACAGGCGGTAGGCGGCCAGGCGCCGTAGATCCTCATCCGGGACCCAGGAAGAGGTCAGCTCCGCCCAGGCGTTGCGGCCCGGTCGGCGCGGGTCCGTCATGACTGGCTTGTAGTCCAGCCACCTCCCGACGTCGGTGATCAGCTCGCGCAGGCCCACAGTGCCCCTCAGCTGAGCGCCCAGACAGCCCGCGGAATGCGCGCACGGGAGGGGTACCGGCGCCGCGGCGGGATTCAGTCGGTCTGGGACTTCGCCGACCCCGACCACGCAGCGGTGAGGGCGAGGTTGTGTATGTGGGCGACGGCCGGGCCTGCGTGGTGGAGGCCGGTGCCGCGCTGGTGGGAGTCGCGGAGGTTCTTGTGCCGATTCATGCGGGCGAAGGCGTGTTCGACGCGGGCCCGCACCTTGCGGTGCTCTGTGTTGTCCTTCTCCTCACCGGGCAGCAGGGTCCGGCCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCAGCGGGGGTTGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCTGCGGGGGTTGCTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //