Array 1 28213-27764 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWTP010000043.1 Photobacterium damselae subsp. damselae strain 162bp-OG4A Contig_000043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 28212 28 100.0 32 ............................ AACTGCTAACCGTGGCTCAAGCGTTGCCATAG 28152 28 100.0 32 ............................ TTTAAAGTTTCCACCAGCGTCAAAATAATCAG 28092 28 100.0 32 ............................ AGAATCACTCAATGATGATCCTGATTTTTCCC 28032 28 100.0 32 ............................ CAGGTGAACAAGATTAAAGGTAAGTTTGCCAT 27972 28 100.0 32 ............................ AGTTACCGATTTTGAGCCAGGCTCCTGCCCAT 27912 28 100.0 32 ............................ TAAGCACATCAAGAAAGGTCACCAACTTGTAA 27852 28 92.9 32 .......A.........T.......... CCGTCTAGTAACACGGGTTGAAAGTCTTAATG 27792 28 82.1 0 ...........CA........C..CT.. | A [27770] ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.9 32 CTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : | # Right flank : GTAAACTTTGGAGCTAACCTTTGCTTTTGGTATCCTTGGTGCTTATCGCTAAGATTATTAGCAAAAGCATAAATATAGGTACTACATGCTCATAATCTCAAACAATGTGACGATTTCCGATTGGGAGATTGAACTTAACGCTATTCGCTCTGCGGGAAATGGTGGGCAAAACGTCAATAAAGTAGCCACAGCAATTCATCTTAGATTTGATATTAAGAAATCATCACTGCCTGCTATTTATAAAGAAAAATTACTTAAGCTATCAGACAGTCGAATTTCTTCTGATGGTGTGATCATCATTAAATCGCAGCAATATCGAACCCAACTGCAAAATAAAGAAGCTGCTCTTGAGCGATTAAAAGAATTGATTTTATCTGCGATGGTTGTACAGAAAGCCCGCCGTCCAACTAAGCCAACCAAAAACTCCCAGCGTCGTCGTTTAGAGTCTAAAACCAAAAGGGGAACGACTAAAACGATGAGAAAGAAGGTTGATTTCTGAG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3829-5237 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWTP010000022.1 Photobacterium damselae subsp. damselae strain 162bp-OG4A Contig_000022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3829 28 100.0 32 ............................ ATGATTTGACGCTCCAATGTATTTAACTAACT 3889 28 100.0 32 ............................ TTGCTGGTTTCGCTACTGTTTTAGGATTACAA 3949 28 96.4 32 ...........................C GTATGAATTTGCACTTGACCTCCTACTGTGGC 4009 28 96.4 32 A........................... AGAAACGTTACGACCCACCATAATTGCACGAG 4069 28 100.0 32 ............................ ATTAAGAACGGTGAAGCACTAAATGGTCGATT 4129 28 100.0 32 ............................ GAATGAGCAACCCACTTTTCAAGAAAACTCTT 4189 28 100.0 32 ............................ ACTGTTTCCGTGTCTATGCTTGCGGCTGGCTC 4249 28 100.0 32 ............................ ACCTTTTCTAAACATGCTGAATTAAAATAAGC 4309 28 100.0 32 ............................ TTCGGATGCTATCGAAAAGTTATGCGGTGATT 4369 28 100.0 32 ............................ TAAATACAGAACCCGCCTCTGTCTTGTGTAAC 4429 28 100.0 32 ............................ TGTAACTTGTGGCGGTCGTAAAGGTGCGCGAC 4489 28 100.0 32 ............................ AGTCCACTTCAGAGACGCGAACCGTAGGTTTA 4549 28 100.0 32 ............................ TGGTTCGGGATCAATCAGTGTTGGATCAACAA 4609 28 100.0 32 ............................ TGTCTGCTTCTGACATGGCCAATGCGATTGTG 4669 28 100.0 32 ............................ AACTGCTTCAAGAAAAGCACCCTGATGTAGAG 4729 28 100.0 32 ............................ AGTCTGCGAATTCGTTTGCTAGTTGCTTTAGT 4789 28 100.0 32 ............................ GTTATAGCGCAGCTCTTTTGGCGCGAATGATT 4849 28 100.0 32 ............................ AAGTACACAGCGTCGGATCTTTCCATGATGTC 4909 28 100.0 32 ............................ TGCAGCGCTAGATTAACCGCTTGCACTTCTTT 4969 28 100.0 33 ............................ GTTCTGAATGCTGCGGTGACCTCGTTCACTTGG 5030 28 100.0 32 ............................ ACACCGTAAAAGCCTGCCGTCGCATGTATTAA 5090 28 100.0 32 ............................ TCAAATCCTCGCACGCTGTGATGGTTTTTCAA 5150 28 100.0 32 ............................ GATCTCTCTGATAGCAAGCGTATTAGGGCTAG 5210 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.7 32 CTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : AGTGTAGATCTAAAAGTCTCAAACTGTCATCTAATAATCTTTATTTTGATTCTTTTTGTGATTATTTTAAGCTGGATTCAAAAGGGACCAAAAGTAGGCGGTTAAGTTCAAGGAGTGATCATGTCTTCAATACCAACAACAAAAGAGGAATTGGAAAAAGCAATTAATGATTCTTTTTCTAAATTACTCATAGACTTAAAAGCAATACCTGAATCTGAATCGCGGACACATTCTCGTCATTATCTAATCATCAACTCTATCAAGAACCATGGTACGAAAAATGGACGTTAGGGCGAATGATTCAGTTTAATACCTCATCGCCAATGAAAAATGTAAGAACTAAGGTACGAAGATTTAAAAGAGGGATGTGACCCTATTTTTTGACTTATTTATAAGTTATTGATTTATAAATATGTAAAATAGGACGCAGAAAAAAGGGTATTTTAGAATAAAGTGGTCTAAGTTCTTTAAAAATAAACCGAAATAGAATAAAGTCTTCA # Right flank : AGCACTACGACACCCAAGCGAAGAAGCGTATTCTTCACTGCCGAGTAGGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-198 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWTP010000010.1 Photobacterium damselae subsp. damselae strain 162bp-OG4A Contig_000010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1 18 64.3 32 ----------.................. AGCACTACGACACCCAAGCGAAGAAGCGTATT 51 28 100.0 32 ............................ TCGATGAAGCCGATACCCTCTTTGAATCATTA 111 28 100.0 32 ............................ TTGAGTATCTTTGTTGAAGTGAAATCGCTTTT 171 28 96.4 0 .................T.......... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 90.2 32 CTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : | # Right flank : AAATCCACTGCAGATCGGGGCGTTACTCCCTTTCTTCACTACCGAATAGGTAGATAAAACTTAGACATATTTTACTCTTTAATCTGATATTTCGTCATTCTTGCTAATAAAGTCGCATTTTAAATTCATCCTGTTGAATATACTAATGCCATGATAGTTAACGCATTGATATGATGTTAAAGATGAAAAAGGACTTTTCTCCTAGCGAGCTTAAAACCATACTCCACTCAAAACGTGCCAATCTTTATTATCTTCAGCATTGTCGAGTGTTAGTAAACAGTGGGCGAGTTGAATATGTTACTGATGAGGGTAAAGAGAGTTTATATTGGAATATCCCCATCGCCAATACGACCACCATTATGCTTGGAACGGGTACATCGGTGACTCAAGCTGCCATGCGAGAGTTGGCTAAAGCTGGTGTATTAGTCGGTTTTTGTGGTGGCGGTGGTACTCCGCTTTTTTCAGGTAATGAAGTTCAAGTGGATGTCTCTTGGCTTTTA # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 8656-9044 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWTP010000010.1 Photobacterium damselae subsp. damselae strain 162bp-OG4A Contig_000010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8656 28 100.0 32 ............................ GCTCCGATAATTCGGTTAATCCACGGCATATA 8716 28 100.0 32 ............................ AGCAAGATAGACCCATCATAGCCTTGCATACT 8776 28 100.0 32 ............................ GCAGCGCGGAATGACAACCGAGCAGTTCAGCG 8836 28 100.0 33 ............................ CGTAAACTTGCCACTTAGCACGAGAAATGCCGC 8897 28 100.0 32 ............................ TCGCCTACGTGGTAACTCTGAGGTTATCGTAG 8957 28 100.0 32 ............................ TTTGCTTCTCCTTGACCTGTATACGTTGAAAC 9017 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 32 CTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GATGAACTAATGGCTTTACCTTGGTTGAAAGGTTTGCGTGATTACACCAAAGTTAGTGCAATCTTACCAATACCTCATGATATTGCAGGGTATCGCACTGTGCATCGCGTGCAAAAAAAGAGTCCTCATAATTTGCGTAAGCGTGCGGTAGCAAAAGGCCGAATGACTGAACAAGAGGCTCTGACGAAAATCCCTGATGCGTTACAAGAACGATTAGCTTTACCTTTTATTCAGATGCAGAGTTTGTCGAATAAGCAGGTAATGCGTGTTTATGTTGCGCTAGGAGAGATTCAATCAGAACCTGTTTTTGGTGAGTTTTCTAGCTATGGTATGAGCCGCACGTCGACCATTCCTTGGTTTTAATCTGTAGACCCTTTTTTTAAGCTTATACTTAACTTATTGATTTATAAATAAGATTGTAATGGGTGAGAAAAAAGGGTTTTTTATTGGAAAATGACTTAAGCTCTTTAAAAATAAACCGAAATCGAATAAAGTCTTCA # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //