Array 1 8789727-8785653 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080534.1 Myxococcus xanthus strain ATCC 27925 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 8789726 37 97.3 33 .................A................... GGGCCCGAACACGCGGCGAGAGCCAGCGCCATC 8789656 37 97.3 33 .................A................... GCTGGCACACGGGCGAGCCGGAACAGCTCCAGC 8789586 37 97.3 34 .................A................... CGGATGGTCCACAGGACCACCTGGCGATCATCGT 8789515 37 97.3 34 .................A................... CGAAGGGTTGAAGGCCACGAGTGCGAGTGGCAGG 8789444 37 97.3 37 .................A................... CACGCAGGCCCAAGCGCAGCTCCATGCGCAGATCGCG 8789370 37 97.3 36 .................A................... CGGGCAGGTGCTGTGGACCGCGTTGGTGGCTGTCGA 8789297 37 97.3 32 .................A................... CAAGCTGTGACAGCGGTGTGACAGCGGATTCT 8789228 37 97.3 35 .................A................... AACAACTACCTCGGGAACATGGATGGCACGGTCAA 8789156 37 97.3 33 .................A................... GAGGAGGGGCTGCGCAGGGCCCTGAAGTCTGAC 8789086 37 97.3 34 .................A................... GCGTCCGGGCCCGCCTGGAGAACCACGGGGCATT 8789015 37 100.0 32 ..................................... ATCCCCTCCTGTCCCATCCTCCCCACCACCAG 8788946 37 100.0 33 ..................................... AGCGAGCTGGGACTCCAACTCCCGAACGCGGGA 8788876 37 100.0 34 ..................................... CAGCGCGGCCGTCTGCGCTGGTGCTCCGGAGGGC 8788805 37 100.0 34 ..................................... CGTGCATATTCACCGGCACCCCATCTGTCCCCTT 8788734 37 100.0 34 ..................................... CGTGCATATTCACCGGCACCCCATCTGTCCCCTT 8788663 37 100.0 33 ..................................... TGCACCGCCTCCTGCGAGGCTGCCGCGCAGCAG 8788593 37 100.0 35 ..................................... TCCTCGCGAGTCGTAGCACCTGGGCGGCTCGCGCG 8788521 37 100.0 36 ..................................... AGCACCCAGCGGATGCCCTGGGCGAGCTCCTCTTCG 8788448 37 100.0 33 ..................................... ATAGACGTCGTAGGACTGGGCGAGCGCGGGGGC 8788378 37 100.0 34 ..................................... TTCGAGCCGTCGGTTGTGGGGGACCTGTTCGGGC 8788307 37 100.0 33 ..................................... TTGATCGAGCAGCTCAACGGGAAGAGCACGATC 8788237 37 100.0 33 ..................................... CGCCCCAGCTTGCAGGCCGAGGAGCCGCAGTGC 8788167 37 100.0 33 ..................................... GGAGAGCAGATGCGCGGCTGGTCCCTCATGGTG 8788097 37 100.0 32 ..................................... GCAATCTGACGGTGAAGCCTGGCGCCGAGCTC 8788028 37 100.0 35 ..................................... CCATCCGAACCGACACCTACCACCTGACGTGCAAA 8787956 37 100.0 33 ..................................... CTGATCGAGCAGCTCAACGGGAAGAGCACGATC 8787886 37 100.0 33 ..................................... CGTCCCACGGCAAGCCCGTCCCAGTGGCGCGTA 8787816 37 100.0 33 ..................................... TCCCCAGCAGAGGCTCTTGAGGCCGCCTACGTG 8787746 37 100.0 35 ..................................... TCCACGTCGCTGGGCTTGGGCCAGCCCGGGAGCTG 8787674 37 97.3 33 ............................A........ GACGCAATCCGCGTCGATTCGTCCAAGAGGAGG 8787604 37 100.0 35 ..................................... TGCACCACGGGGATGCCGAGCGCCGCCACCCGAGC 8787532 37 100.0 35 ..................................... GGGACGGTCCACTTCTTCGAGCCCCAAGTCTACGG 8787460 37 100.0 33 ..................................... ATCGCCGTAGATGGTCGCCAGGGGCCCGGCGCA 8787390 37 100.0 33 ..................................... TTGATGCCGACCCAGCAGACCGCGCAGCGCTCA 8787320 37 100.0 33 ..................................... GAGTGGCCCGGGAGGGACGGCGTGGCTGACTGG 8787250 37 100.0 33 ..................................... TCCAGCCCGCGCAGACGGCGGGCAACGTCCGCA 8787180 37 100.0 34 ..................................... ATGAGTCGCTGGCGCACCACATCCATGTCGCGCG 8787109 37 100.0 34 ..................................... CCAGGGGTCGGAGCACACCCACGACAATCCAGCC 8787038 37 100.0 34 ..................................... ATGGAGCGCGGACAGGTTCAGCTTGAAGCCCTTG 8786967 37 100.0 39 ..................................... TGAACCCGCCCACGGGCGTCTGCTGCTCGCCACACGCGC 8786891 37 100.0 34 ..................................... CCGATTCCTGTCGCACTCCGATGGCCGATTCCGT 8786820 37 100.0 33 ..................................... GTAAAGCGAGGACAACAGCGCCACCTGGATGCG 8786750 37 97.3 33 ..............................G...... CGCGAAGATCGCCTGCTAGACGAAGGTTGCCGG 8786680 37 100.0 35 ..................................... TGTCCGTCGACGTCGAGCGCTTCGAACGTCACGTT 8786608 37 100.0 34 ..................................... AGCATTCACCCGGCTGCTGTCACGGTCGTGTGGA 8786537 37 97.3 33 .....................A............... TGGTCGCTGATGCTTGCGCCGAGCGCGGAGAAC 8786467 37 97.3 34 ..............................C...... ACGTCCAGGTTGCTACGGTCGGTGATGGCGGCCT 8786396 37 97.3 33 T.................................... TTGTAGACGAGGTATGCGGCGGCGGCGAGCGCA 8786326 37 97.3 34 .......................A............. GTCGCAGATCACCAAGTCTGCTTCGGGCGGCTTC 8786255 37 97.3 32 ...........................A......... TCATTCGCCTCGCCGGCCTTCTGGGCCTTGTC 8786186 37 97.3 35 ........C............................ ATGATGCTCGTGGACAAGGACCCGGCCGCCAGCGG 8786114 37 100.0 34 ..................................... GTCAGTGCGCACCGCAACGGCCTGGCGCCACAGC 8786043 37 97.3 36 ......T.............................. CGTGCAGTCTCAAACCAGTCTTTGCCCGACCGGATA 8785970 37 94.6 34 ...A...............A................. CTGAACGCCGCCGCCGGCGTGCTGTTTTCGAGGT 8785899 37 94.6 31 .......................AT............ TCACCCAGCAACGTGGGGGAGTACCGGAGGG 8785831 37 97.3 35 ..........A.......................... ACCGCTGACTCCGTGGACCTCGCGTACCTGGGCCA 8785759 37 100.0 33 ..................................... CGCGAGGCGCACCGGGTGGTGGACGGGTGGGCG 8785689 37 94.6 0 ......T............A................. | ========== ====== ====== ====== ===================================== ======================================= ================== 58 37 98.8 34 GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Left flank : TCCCTTCGCGATGCGCTGATGCGTAGATTGACCGTGCTGATTTGTTACGACGTGCGGGTGTCGGACCCACAGGGGCCTCGGCGCCTGCGCAAGATTGCGCGGGCTTGCAGAGACCATGGCGTGCGAGTGCAATACTCCGTCTTCGAGTGTGTCCTGGAGCCCAAGGACTGGGTCGTCCTGCGCGCCCGCCTGCTCGGCGCATTCGATTCGGAATGCGACAGCCTGCGCTTCTACTTCCTGTCGGAGGACGATGCCCGGAAGACGGAGCATCATGGCGCCAGAGCACCCTTGGACGTCGAGGGGCCGCTGGTCCTGTAGGCCTCCGCGAACCCGTCCCGGTGTACGCTCCGCCGAGGGTTCGCGCTCATTGAAATCCCGAATAGAATCATGGAGTTGGGTGAGTGGGCGTCAGGAACGGCGAGGCGCTTTCGTGGCCCCGCGGGCCGGTTCGCGAAGTTCGGCCGGATTCCGTAGTCAGAACGGTATGTTGGAAGGGCAGA # Right flank : CACCCAGAGCACTGGAGTCCCGGTGCCGCGTCCTGCTCGTTCCTCATGAACGCGAGTACTCTCTCTCTTCAACGGGTCCGAAAATTGGGGAGCAGATCACGAGGACTCGCTCATGCTCAGGCTCCAGAAGTCGCCGGGCATACCCAATCCACGGCACTTCTGGCTCGAGGTTTTCGGGGATGGCCGTTCCAAGCGCAACGGCTCGTCTCTATCCAAAGCGAACGCGGCCGACGCCCATCGGCTCACGATGCTGCTCATCGCCGCGCGCCGGTTGGACGAATACAAGGAAGATCACAGCGCCCTCCTCCCGTCGCACATGACCGGCAGGTGACGATGTTCGAATCCACCGTGGACGGTCGGCGCACGCGTCTGACGTTGGACAGCGACACGCCGCCCGACATCCTCCGCTTCATGCCGCAGGTGGCTGCCGCTTACGGCATCGAGCTTTGAGCACGAGGACCCCGGGCGCCCCAGGGTTGGAGGAACACCTCCGTCTCCTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 9066011-9065395 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080534.1 Myxococcus xanthus strain ATCC 27925 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 9066010 36 100.0 36 .................................... AACGCGACCTGCGGCGTCTCTTTGTATCCGTGCACC 9065938 36 100.0 37 .................................... TCCCTGCGCGATAGGGCCGCGCGCGTGGTACCCTTCG 9065865 36 100.0 40 .................................... AAAGGTGGGGCGTCCTCTCGCACCAGGTGCCCCGCGTGGG 9065789 36 100.0 35 .................................... TCGACGGGGACGAAATGGGCTCACGCCTCTGGACG 9065718 36 100.0 36 .................................... TGGAAGAAGACGGCCATCCGCCGGCTGATCAAGCTG 9065646 36 100.0 38 .................................... ACATGGATGCCGCGCAGTGCCTGCATCGGCCCGAGCCC 9065572 36 100.0 33 .................................... CCAGCGCATATCCCTCGTACCGCCCGAGGTTCG 9065503 36 100.0 35 .................................... CTGAGCTGCGGGTGAAGGGGGCGTTGCAGGCCAAG 9065432 36 94.4 0 .....A............................C. | TC [9065399] ========== ====== ====== ====== ==================================== ======================================== ================== 9 36 99.4 36 GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : GCTGACTGTCCTGTTGTCCAGGCGGACCCAGAAGAGCCGTTCAAGAACGAGGACCATATCGTTCCCCTGTATGGTCCCTTGAAGGACATGCTCTTCCTGATGGCCTTCAGCAGGAAGCGGATGGCCCTTCTGGAGCATCGGCGACGGTTCCTCCCTTCACTCGTGCGCAGCGGAACGGGGAATGTCCGAATCGTGGCTCCCTCCTTGGTGGGAGCCATCGACGAGACGCTTCTCCAGCTCGGCTTCCAGACGCTGCCCTATACCAGCCCACTGACTCCGCTCTACGAGCGCGGTGACGCAGCCTTCTACGTCGACCGTTCTTCACAGGGAGGAGGACTGTCCGCCGAGTTGGCGGCACGAGATGAGCGAGAATTCGGGAGGCTGGTCGAAGTCATCCAGGATTCTACGACTCTTGTATAGTATTATCCGGTCAGGTGCACCAAGCGCGGTCGCCCCGTGCTGACGGATACGGGCGCCATTGCCATCCCAGAGGACGGCAA # Right flank : TATCAGAAGATCTTCATTGTAGCCTGGGCCAGCCATGAACGCAGCGCCTCGCCTTCAACCCGGACGGGCGCGTTCTCGTGACCCAGATCAATCCAGGAGGCCTGGGTCGCCTGTAATCCGGAGGCGCCGCGGAGATCTGCCCCAGAAAGCCTCGCTCCATGAAGGACCGCGCCTTCCAGATGCGCATCTCGGAGATTCGCGGACGCGAGGTTGGCACTGACCAGGTAGGCGCCTTGAAGGTCCGCGCCTTGAAGGTCCGCGCCTTGAAGGTCTGCTTCGCCGAAGCTGGCTCGGAGCGCGTTCACCTGCGTCAGAATGGCCCCTCGAAGGAGCGCATAGTCCAGGTTGGCCTTTGAAAGCTGCGCTCTGGAGAGGCTGGCGCCGATGAAAGATGCGGACGCAAGGTTGGCGTGGGCGAGCTTCGTCCTGTCCAGGATGCATCCATCCAAGCGCGCCCCAGGAAGCGCTGCCTCCGATAGATCTCTCGACGACAGGTCGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 9068901-9067286 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080534.1 Myxococcus xanthus strain ATCC 27925 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 9068900 36 97.2 37 ...T................................ TGCTGACGCACCACGGCAAGCGGATGGGGCGCTGTCA 9068827 36 100.0 39 .................................... GTTTCCGACGCGCACGCGCTTGCGGTGTCCGTCCGGGTC 9068752 36 100.0 35 .................................... AAGGCGTTGCGCGCCACCATCTGGCAGTGCATGCC 9068681 36 100.0 35 .................................... CCGTGGCGGCACACCTGTACGGTGCCAAGTCATGA 9068610 36 100.0 35 .................................... AATCCTCACTGTACGAACAGCCCGCGCTGCGTCCT 9068539 36 100.0 36 .................................... GCCTGATGCAGCGTGGATACACGCTGAAGCCGCCTG 9068467 36 100.0 33 .................................... GAGAAGGGTGTCAAGGCTAGCATTGAAGGCTTT 9068398 36 100.0 36 .................................... GAGGTCGCTGCCGCCCTGCGCGCCGTGGGCTTCCAG 9068326 36 100.0 37 .................................... GCGTCTATCGCCAGGACAAGGGCTGTGTGTCCTTGGA 9068253 36 100.0 37 .................................... CCTCGGATGTTGCGTTGGATCGCGTCGTAGGTGTGTT 9068180 36 100.0 33 .................................... GGCGCGGAGCCGACCGCCATCGCGCGTTCCTTC 9068111 36 100.0 35 .................................... CGCCAGGGGGGGTCCTGAACGCGATTCACCGCGTC 9068040 36 100.0 37 .................................... AACGACCTCTGGTCGAAGTTGGTGCGTGGCAACGAAT 9067967 36 100.0 37 .................................... CCTCGGATGTTGCGTTGGATCGCGTCGTAGGTGTGCT 9067894 36 100.0 36 .................................... CAGGGCTGGGACCTGTATCTGGAGAAGACGCGCGTT 9067822 36 97.2 37 ...........A........................ TACCCACCCATGCCGACCGTTATCAGCTCCCACATCT 9067749 36 100.0 38 .................................... CTCGATGCGATGGGTTCGAATCCGGGCGGTCCTGTGAC 9067675 36 100.0 33 .................................... TCCCGGGCCTGAGCTACACATCCGCGCTGGCAT 9067606 36 100.0 34 .................................... GTCAGCATCGCGTCCGGAAACTTGCCGAGCGCCT 9067536 36 100.0 35 .................................... CTTTACCTGCCGCGCCGACAACGACCTGCGGCGGC 9067465 36 100.0 35 .................................... CCTTGGTACGTGGAGTGCGGCATTGCAGCTCTCAT 9067394 36 100.0 37 .................................... CTGCCGCGTCCGCCCATGTTCTTGCTCTCCATGTTTC 9067321 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ======================================= ================== 23 36 99.5 36 GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : CGCGACCCCAAGCGGTGGCGGAAGGTGCATGCCCTGCTGAAGGGATACGGAGAGTGGCTGCAGCTCTCCGTGTTCCGCTGCTCGCTGACGGACCGGGACCGGGAGAAGCTGCGCTGGGAGCTGTCGCGGCGGATGGACGCCGTGGATACGTTGCTGGTGATTGGGCTGTGTGGCGGGTGCGTGGAGCGCGTGCGCGCCATCAACGCGAAGGAGGACTGGCCGGAGGAGCCCGCACCGTTCAAGGTGCTGTGAGACGGACGACAATCAAGCACCTCGCCGTGGCGGAGGCTCGCGATGGCGAAAGTGGCGGATTCCCTGTCGTTTCATGGGGGTGAGGCTCTTTGACAGGTGAATAGGTGCATGATCGATGAAAAGCCGAGTGGTTTCATGGGGTTGGCGATTCTGGGTAGGGCCTGGGATGGCCAACCTGGGGGAAGGAGGGGGAGGTGCTTGAAAGGGGTTTGTAAGGTGCCGGAATTGCTGGGGGATTCAGGCGGGCT # Right flank : CGCTGGTTGTTACGCCAGTCGTTGTTGGTGTGGCCGCACACACTATTTGAGTTGTGAATGACTGTTCTCGCGGACACTGATTGAGGGGCTCGCGAGGAGAGGTTCCGAAAATGCCATTACGGAGCCGCGCCACCGGAAATCACGCTCGTGATGGGAGTCAACTCATTGTCGCGACAGCAGTTTCCGCGAGAAGCGGAAATGATTGCTCCCATCCTGCGGTTCTCCGGTCGCGTCAGGGCTGCCCGAAGGGCACCGCCGGAGGCGGCCAAGCCCTTGACGCGACTGGGGAACCGTAGTCCCGAGGCTACCAACCAAGTGGCTCACCGGACCATCAACAAAGGTGCGCGGCAACACCTCGGGCGACAGCTGCAAGGTGGTATTGACGGAGATGCTCTGCGACATCAACAAGAAGTCATGCTGAACTCTCTCTTGCTCCCGTTTGATGCCCTACGCCATGAAAGAACTGCTCAAGTACATCAATGGATTCGAACCCGCATTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 9094539-9090753 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080534.1 Myxococcus xanthus strain ATCC 27925 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 9094538 36 100.0 34 .................................... GTCCGGCGCTTCAAAATCTCTTTCGACTCATGCA 9094468 36 100.0 37 .................................... CCGTGGTGGGTGATGGCCCACGTCCACGGGCGCGCGA 9094395 36 100.0 35 .................................... AGGTACTTCTCCAGGCTGCCGCGCATGCCCGTCAG 9094324 36 100.0 35 .................................... GGCCTGATGCGCTCAGGCGGGTGGCTAGATGGATG 9094253 36 100.0 35 .................................... ACGTGGCACGCGGACAACCTGCGCGTGCATGCCAA 9094182 36 100.0 35 .................................... GCCGCGCTCCAGCATCGTGACGACGAGCACGTGGT 9094111 36 100.0 36 .................................... TCCGTCTTCACCGTCATGTCGTCGTCCTCCCTCAAG 9094039 36 100.0 36 .................................... CCCAGGCAGGCCCGATATTCGGCTTCAGCGCTCCAG 9093967 36 100.0 39 .................................... TCCATTGGCTGAGGCGAATGCCTCATTCCATGGTCTGTT 9093892 36 100.0 37 .................................... AATTGGGCCTCGCGGTGAACACCGAAAATCTGGTCCG 9093819 36 100.0 35 .................................... TCGAACCTTCCGATGCTTGAAGGTCACCGCATGGG 9093748 36 100.0 38 .................................... AAACTATACTCAGTCCTGATTTGCATTTGCGTCCTCCG 9093674 36 100.0 38 .................................... CTAACAACGCTTTTGCTGACCCTGTGCAATTGGTTAAC 9093600 36 100.0 36 .................................... TCCAGCTCCAGGTGGGCGCCAGCCAGCGCGAGGCGG 9093528 36 100.0 36 .................................... ATGTCCTCGGCAATCAGGACGAAGGCGGCGCGTTCG 9093456 36 100.0 37 .................................... GTGCGTCTGGCCTTCGCCGTCGTGACGAAAAGGATGG 9093383 36 100.0 35 .................................... GTGCTACCTCCTACTGCATGAGAGACAAGGCGGGA 9093312 36 100.0 37 .................................... CCATGAGAAGGCCATTGTCCCCTTCACGGGTTCATAG 9093239 36 100.0 38 .................................... TCGGCGAGGTCGCTCCGGGCGTAGTCCAGGGCCTTGGC 9093165 36 100.0 38 .................................... TCGGCGAGGTCGCTCCGGGCGTAGTCCAGGGCCTTGGC 9093091 36 100.0 34 .................................... TCTGGCACCGGGGCCGTGGAGCGCGCTGGGTTCA 9093021 36 100.0 40 .................................... TCGAGGCCGGCCAACCCGGCCGTTGGGTGAGTTCGAGAGA 9092945 36 100.0 38 .................................... ACGGCGATGTGCAATGCGAAGCGTATCTCGGTCCCCTG 9092871 36 100.0 37 .................................... CACGACATCCAACCCGGCCCGCGCCATGTCCGGGGCG 9092798 36 97.2 36 .........A.......................... CTCCCATCGCGCCCCGTGAACGTCTTCTCCCGTCCA 9092726 36 100.0 33 .................................... CTCGTATCGAGTCCAGGAAGCTCCTCGACTTCA 9092657 36 100.0 38 .................................... CGTCGCCATGTCGTGTGTCCTCTGCGGTGCTGCGGGTG 9092583 36 100.0 40 .................................... GTCAGGGCGGCGCTCAGGTACTCTGCGCGGTACTGAGCGG 9092507 36 100.0 33 .................................... TCTGCCATTCGCACGATGCCGTCCGGCTTGAAT 9092438 36 100.0 34 .................................... TCCGAGGTGGGCGGCAAGGTCGAGTGCGAGCGCA 9092368 36 100.0 36 .................................... CCCAGGCAGGCCCGATATTCGGCTTCAGCGCTCCAG 9092296 36 100.0 40 .................................... CACATCGCGGCGACCTGCCGTGACGAGAAGGCCATCTGGT 9092220 36 100.0 34 .................................... AGGACAACCGCATCACGAAGGGGGAAGCGACGAT 9092150 36 100.0 34 .................................... CTCGCCTACGAGCACGACATCTTCAAATCAGGAG 9092080 36 100.0 37 .................................... AAACCCCCGTCGCGCCCCATGTAGCCGACTGGGTGGT 9092007 36 100.0 36 .................................... AAGAAGTCCGGCCGGATTGAGCGGATGCGGCCTATG 9091935 36 100.0 35 .................................... CCTTCCGTGCGATGCGCCAGAAATTGACTGGCAAG 9091864 36 97.2 36 ......G............................. ATGACAGTGATGATGCGTGGGTCCGGGACGGTCAAC 9091792 36 100.0 37 .................................... GGAGGGTGCTCCGCGATCTCCGGTGCCGAGTTGCCCG 9091719 36 100.0 37 .................................... TAGTCATTCACGAAGATGGAGATGCCGCGGTACGCAG 9091646 36 100.0 36 .................................... TCACCATGGCGGCCGTGCGGCGAAAGCCGCGCAGGA 9091574 36 100.0 36 .................................... TCGTAGCCGGAGTACCACCCGCCATTGCCGTTCTCC 9091502 36 100.0 33 .................................... GTTTGAAGATTGCCTGTTAGGCCGTAAGGCTTC 9091433 36 100.0 35 .................................... CTGCAAGCACGGTGGCCAGCAGCTTGCCGCCGTTG 9091362 36 100.0 38 .................................... AAACACACGGGGTGTTTCAACATATCGCCGTCGATTTC 9091288 36 100.0 36 .................................... CCGAACCCATGGAACGGGTCATATTTATTGAACATA 9091216 36 100.0 34 .................................... CTATTACGCGCGCTGCGAATGCAGTCATCCAAGA 9091146 36 100.0 34 .................................... CTCGCACTCGACGCGAGACGGCGCCAACCCACCA 9091076 36 100.0 34 .................................... GCTTCTCCGTCCTTCTTCTTGTCGTCTGCCATTT 9091006 36 97.2 39 ...................................T GTGGTCCAGTGGTCGCCCTTCACGCGGACGACGTCGGGC 9090931 36 97.2 37 .....................C.............. AAGGCTGGTATCCGTGACGCGGAGCGCTTGGTACGCG 9090858 36 94.4 32 ..C............................C.... TAGTCGGTTCCGCCATTCTGGTGTTGCCAGAC 9090790 36 94.4 0 ...............................CT... | CG [9090786] ========== ====== ====== ====== ==================================== ======================================== ================== 53 36 99.6 36 GTGCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Left flank : GCTGGTGCGTATCGCCGGGAAGCGGGTGGTGGGTTACGCGCTCGAGCTGCATGGCGTTTCTGGAGAGGACTCGTTGCGAGTGCAGGCACAAGGCCTGGGCGGGCGCCGCCACATGGGGTGTGGCTTGTTTCTTCCGCCGCGTCCCGTGGTGCGGGGCGTTGTGCCGCAGCTCGGGGAACTCGCGCGGGCCGCGTGAAGGCTTGCCGGTGGAGCAGGGGCCTTGCAGGAACGTAGGACCGGGGGCTGTGCGGTGCGTGACATTCATGCACCTCGCCGTGGTGGAGGCCTGTGCCGGTGAAATCGTTGAAATCCTCAGCGAGTTCATGGGGTTGGGGCTCTTTGACAGGTGAATAGGTGCATGATTTATGAAAAACCGAGTGATTCCATGGGGTTTGGAATCTTGGGTAGGGCCTGGGAGGCGCAACCTGGGGCCGGGAGGGGGGAGGTGCTTGAAAAGACGGGAGTAAGTTGCCGGAACTGCTGGGAGATTCAGATGGGCT # Right flank : ATCTGGAAGCTGCGAGGCCATCCTGCTTTCCAGCAAGGTCGCGCTCGCCGTACAGGGCCTCCATGAGCGAACATCAGGTCTACGAGTTCGTGGCGCTGGACCGGCCCTTGACGGCAAAGCAGCTGGTCGAACTCCGGGCCATATCGACGCGGGCCGAAATCACACCGACCCGGTTCTGGAACGAATACCACCGGGGTGGCTTGATGGCGGACCCAGCCCAGCTCCTCCTGCGCTACTTCGATGCGCACCTGTACCATTCGAACTGGGGCGACCGTTGGCTGATGCTGCGCCTGCCGCGTGAGGGGCTCGACATGAAGGCGCTCAAGGCCTGCTTTCCGGCACGAGGTCCATCAACGCTCACGGTGTCTGGGACCTCCGTGTTGCTCGACTTCCAGGTGAGGGATGAGGAGCCCCCGGACGAGGAATCTCCGCCCGCCTCGCTCGCGGCGCTGGTTCCGCTCCGGACCGAACTCCAGCGCGGAGACCTGCGCGGGGCCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //