Array 1 7664-7334 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUDQ01000029.1 Clostridium sp. AF37-5AT AF37-5AT.Scaf29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 7663 37 100.0 34 ..................................... ACATACTGATTTTTGATTTCCATGCAGTTAATTG 7592 37 100.0 37 ..................................... AATATTAATAGAAAAGTCCCGGCTAATGTTGTTTGCA 7518 37 100.0 38 ..................................... GCTTTGCAGCTGTTTTATTTTTTTCTCGATTTCGTTTC 7443 37 94.6 36 ................................AC... GCCCGCATTGACGCATATGCTGTCATAACTGCTTCG 7370 37 83.8 0 .........C..........CA....AA.....C... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 95.7 36 GTAGAAATGAAGGTCGCCCCATTCAGGGCATTGACAC # Left flank : AGCTGCTATGGGCATATAGGAATTTTCTGAACTGAAAATTCCGTATGATACAGTTGAGGCTGCGGATTTTGCCGATTTGGAATGCGAAGCATCGGCAAAATCCTGTCCCAGTGCGCAGGCAAGAAAGCCTGTGAACTGGGACACAACTCGCTTTGCTCAAACAAGTGTCCGCTGTTCTCCAACGCAGTCACCTGTGAGCTAAGAGGAAGCCAGATCCCCGGATCATGTATTCCTGCCCGGAAGCTCACCGCTGGGGGATGGTGGGATCGCAAATAATGGTCGCAATAATGGAAAATAATCTGCTTGTGGAGCCTGAAGAAGTTTGTTATAATGGGGGCAGCTGAAAGCGAGAAATTACCTTCATTTCTGCGATAAATATGAACAAACTGTGAACACGCCAAAAATCACCTTCAAAAAAGCCTTTTTCAGAATATTCTGGAAAATACTTGCAAAAACGGGTCCGCAAAGCCTTTATTTATGCGGGTTTCCGGAGGCAAGGG # Right flank : AGCGCGACGCGCTCATAACCCGATACCGGCACCATGCAGAAATGAATCTCATCTCATTCCGCACACACCACCGGACATTCCAAAAAACGCAAAAATAAGGGAATACACACGCGATCGAGTGGATCGCAGCAGAGAGAAGAGAATATTTTTATAACTTGAAATTTCTGAGAATAAAAAAGGAAACGCATGTTTTGCTCACAGTCAGAAACTGTGGCAGGACATGCGTTTTTATATAGGAAGTTTTTTATATAGGAAATGGATACAGACAGATCTTCAGTGAAGATACTGCTCCCGGGCCTTTTCCATCGCATTGGAAAAGCATTCTTTTGCGTTTTCGATGAACAGGGTCAAGATCTTCGGAAGGTAGGCATCTTTTCGGTAAACAGCGACGATTGCGTGTTTTTCGATCGGAAATTCGACCGGGAAGTAGAGAATGTGGTCGGTTCGTCCGGGAACGAGGATTTCGCCTTCCATCGTAAAGGTACAGGCGAGACCTGTGG # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATGAAGGTCGCCCCATTCAGGGCATTGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 12348-11569 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUDQ01000029.1 Clostridium sp. AF37-5AT AF37-5AT.Scaf29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 12347 38 100.0 35 ...................................... CTCCCAGATCACCTTCATCTTCTGGCATTGTTTTG 12274 38 100.0 33 ...................................... ATTTCGCCACTAATTCGCAAAAATCTCCGATAT 12203 38 100.0 36 ...................................... CGGAAGCTCCTCCCCAGGTCTATCGCTGTCTGCATA 12129 38 100.0 36 ...................................... ATTCACGGTACCGTCTTTTGTCACGGTCTTTTCAAT 12055 38 100.0 37 ...................................... ATATTCTCTGAATCCTGGGCAAGAGCAAAAACGACAT 11980 38 100.0 37 ...................................... AGTAGGTGCCGGTGTCGGTTCCGGGAAGTCCCACTCA 11905 38 100.0 38 ...................................... AAGTCTGTGGAGCCGCACAATTTTATGTCTGCGAGTTG 11829 38 100.0 38 ...................................... TCCCTTTTTTGCTTTTTACCTGGAAGAGAGAGGAGAAC 11753 38 100.0 35 ...................................... ATACTGCGCCGCTGCGATCTTCAATGTTCTGGTTA 11680 38 100.0 36 ...................................... GTTTTTCCGCTTGTCTTTTTGTCATTTCTCGCTCTC 11606 38 86.8 0 .........A.....................A.TT..C | ========== ====== ====== ====== ====================================== ====================================== ================== 11 38 98.8 36 GTAGAAATGGAGGTCGCCCCTTTCAGGGCATTGACACA # Left flank : ATGCAGGGCGTGCGTTTTTTGTGTATGTGCTTGCTTGGGGTGTTGGCGAGAGTACGCGGTGAGCTTCCGGACAGGAGTGCCGGGGATGCGGGGATGGTTCCTCTAACCTCCCGGGAGACTGCTAAGGGCAGAAAATCGACGACACAACTCGCTGCGCTCAGACAAGTGTCATCGATTTTCTAACGCAGTCACCCGCGAGCTAAGAGGAAGCCAGATCCCCGGATCATGCACTCCTGTCCGGAAGCTCACCGCTGGGGGATGGTGGGATCGCAAATAATGGTCACAATAATGGGAAATAATCTGCTTGTGGAACCTGAAAAAGTCTGTTATAATGGGGGCAGCTGAAAGCGAGAAATTACCTTTGCTTCTGCGACAAATATGAACAAACTGTGAACATGCCAAAAATCACCTTCAAAAAAGCCTTTTTCAGAATATTCTGGAAAATACTTGCAAAAACAGGTCCGCAAAGCCTTTATTTATGCGGGTTCCCAGAGGCAAGT # Right flank : GAAGCTGAACAGACCAGAGAACTTTCTTTTTGAACAAGAAAGTCCTCTGGTCTTTTTCTATTCGTGAGATTGCAAGTGTACAAAAATCGTGAATTGGCTATCGTAAAATAAAAACATAAAGACAGAGAGTTCAAAAGAGGATAACAGCAACATAAAATTTTCATACATTTTAAACCAACGGTTGAAGAAGTTTTTTGTTGTCTCTGTTAGAATAAAAGCAGGATCAAATTGAAAGCTCTGATGGACTCTGGCTGTGAAAGCAGGAGGCAGGGGAAGCGCTGACAAGCAGAAAGGAACGAGTATGTACGTAGACGATAAATATAAGATTGTCGGGACCATTTCTATTCCGGAGGAGAAACGGGAAGAGTTCAACAGGAATGTAGAAAAGGTTCTGGATGTGTTAGGGATCAGGCAGACGGAAAAGCGAATGGTCGGGGACAGGGAGATCACGGTGTTAAAAAAGCCGGAGGCAGATGAAGATGGAATCGTAAAGTTTAATT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATGGAGGTCGCCCCTTTCAGGGCATTGACACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 1093-477 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUDQ01000040.1 Clostridium sp. AF37-5AT AF37-5AT.Scaf40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1092 32 100.0 34 ................................ TTGCAAGCCTTCCATAAACCTGTGAAGTGCCTAG 1026 32 100.0 35 ................................ TTGGGTCATTCGTCATGGTAGGCGGCAGCCGTATT 959 32 100.0 33 ................................ GTAAGCAATCTGATTGACATTATTTCCGATTCT 894 32 100.0 31 ................................ TGAACGGATCTTCCGATCCTCAATCGAATTT 831 32 100.0 32 ................................ ATCACGGAGTCCGGCACAGACTACATCGTGGT 767 32 100.0 32 ................................ GAAAAGTGTTGGACAGGTGTGATATCTGCGGC 703 32 100.0 32 ................................ GCATCTATGAGATGGTTGTTCTTGTCCGGGTA 639 32 100.0 32 ................................ TACAGGAGTTCCAACTTTAACAAGGGAACGAA 575 32 100.0 35 ................................ ACAAGAAATGCAGGATTTTCATGAGAGTCTGATCC 508 32 93.8 0 ................A..............T | ========== ====== ====== ====== ================================ =================================== ================== 10 32 99.4 33 GTCAGGGCTCGTAAGAGCCCGTGGATTGAAAC # Left flank : AATATCCGCCATACATTTGGGAGGGGGATTGACAGTGTTTATTTTGCTTTCATATGATATCGCAGATAGTCCGGAACGACTTAGAAAAGTTGCAAAAATATGTGAAAATTATGGGGTACGTGTTCAGAAATCTGTTTTTGAACTCGATATCAGCATGGCAAATTTTGTGCAATTAAAGGCTGAGTTATCCCGCCTTGTTGACAGAAACACCGATACGATCAGATTTTATCGCTTAGGGAAGAATTATAAAAATCAGATAGAGGTGATTGGAAAACGTGAGGACATTGAACTTGGCCAGGATAATTCCATTATTTTATAGTGGAAAACGTGAGGTGCACATAAAAAAGAAGAGATGAATTAGACAACATGCACAAAAGTTCAGCGTACAGATTGTGCATGATTTAATAGTGAAATGAGCATGTTATTTACGATTGTGGTTTGAATTGTGAATGATATAAAATATGCGGCAATTTTTAGCAAATAGTTTGTTTGGAATTGCC # Right flank : TAGGGCTACCGCAATCCCACTGGCTTTAGACGGTGGGTTAAGGTAGCCGGAAGCGGAGGTTTGTGCTATACTTGCGTTATGGGAACGTGGAAATCAAAAAACAGACACAAATATTTGTTACAGTATCATATTCGTATGCAAGTATAGAAAGAAATTGCTGATGTCAAAACAAATATCAGATGATATAAAGCAGTTTTCTTATGAGATATGTCAAAAGCATAAAGTCATTATCAGATATATGGAGACAGATAAAGATCATATTCATTACATGATAGAAACAGGACCAACAATGTCTATCAGTAAAATAGTAAATCTGATGAAGAGTTATACAACCTATCATATTTGGAAAAGATATCCGGATTATTTACGAAAACATTTCTGGAAAGAACATACTTTTTGGACGGACGGATATTTTGTTTGCAGTGTAGGAAATGTATCAGAAGAGATGTTGAGAAAATATATAGAAAATCAAGGGTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGGCTCGTAAGAGCCCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.00,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : NA // Array 1 150443-149195 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUDQ01000006.1 Clostridium sp. AF37-5AT AF37-5AT.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 150442 28 100.0 33 ............................ CATGGTCAAGATCCTGCTCCCCGTCCTGTTGAT 150381 28 100.0 33 ............................ TCATCCGGAACCTCAGAATCTTGATAATTCTCC 150320 28 100.0 33 ............................ CAACCCCTTTTCTTTTTTCCTTGCAGAGACTGC 150259 28 100.0 33 ............................ CATGATATTGTGTCCCCATATGTGCTTGTTGCT 150198 28 100.0 33 ............................ CGTCTCCAAAAGCTACCAGAGCCTTGATTCTGA 150137 28 100.0 33 ............................ CAGTCAGAAAAAGCGAATACTGTATAAAACTTA 150076 28 100.0 33 ............................ TCCAACCGTATGGACGATGGATTATTTGGACGC 150015 28 100.0 33 ............................ CTGCGCCGCGCCAGAAATTGAGTTTCGCATAAT 149954 28 100.0 33 ............................ TTAGTAATATTATAACTTGCGGATTTAGATTCC 149893 28 100.0 33 ............................ CAGATGGAGAAACATATTGACCATCTAACTGCA 149832 28 100.0 33 ............................ CTGACGGAGCTGTTGAGGCACTTAAAGCGTTGT 149771 28 100.0 33 ............................ TTGTCAATAGTCCATAATCTCGTCACAGCGGTA 149710 28 100.0 33 ............................ TATGTCCTCTTCTACTGTCTCCGGTCGGCTCTT 149649 28 100.0 33 ............................ TCAGGCGGAAACTCAAAAAAGTGCATACCATGA 149588 28 100.0 33 ............................ TAGAACGGACCTCCCGGACCGTGCGATCCGGTA 149527 28 100.0 33 ............................ CACACAATAGCACAACGGCGCGCAGTTGTCAAG 149466 28 100.0 33 ............................ TGCTGAGAGATTCCGGCGCTCGTTATTGTAGGT 149405 28 100.0 33 ............................ CCACTCAATGATCGTCTCGATCAGTCGGCCAAA 149344 28 100.0 33 ............................ TGTAGGTTCCGGAGTCGTGCAGGCATTAACGCC 149283 28 100.0 33 ............................ TAAGTAGAAGCGTTCTTTCCATTCCTCCAAGTA 149222 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 100.0 33 GTATTCCCCGCGCAAGCGGGGGTGATCC # Left flank : TCATCAGATGAGATTATTGAGTTGGCGGCGATCAGAATCATTAACCACAAAATTGCAGACCAATTGGAGGTTCTAGTAAAAACAGAAAAAGGAGTTCCAAAAGTAATTACTGAACTTACGGGGATTACAGAGGAGATTCTTGAGGAAAAGGGGGTGGTTCTTTCCTCGGCGATGGAGAAGTTCTGTAAATTTATTGGAGAAAGCGCAATAGTTGGACATAATATCGCATTTGATCGCAGCTTTTTAAAGGAGGCTTGTCGAAGAACCAATCGTATGAATCTGAATAATCCAGCAAAAGATACATTAGATCTTGCGAGAAGACGAATCGATGATATTGATGATTACAAGCTTCATGCACTGGCAGACTATTTCCAGATAAAAGTTGAAGAGGAACATAGGGCATTAAGTGATTGCATTACGACATTTCAGGTGTTTGAGAAACTAAATGAAATTTAGATGTGGAGATTGGGAAAAGGCTGTAAATATGGGATTTTTTTAGT # Right flank : CGTATTAAAGCATGGGCCTCTAAAAAGAAAAAATCCATCCCCCCATTGCAATTCTCCGCTATTTTGCGCATACTCATAATATGAGTGGATAGATGCAGCCGCTATGTGTTGGGCATTTTGCCTGCCGTAGTAGAACGGGGCACTATCCACTCTTTATGCTTATGAACAATCAATAGCCCTCACGCGGACTCCCGCAGCAGCCGGATCAGCTCCTCCATCGCCGGAAGGGTCTGTTTTCCTTTCAGCGTAACGATGGAGTAGCTGGTGGTGTCATCTGGATTACCGATCCGGAAGCAGCGGACAGGCTTTGGATAGTGGAAATTTTTCATGTACTGGTAGAAGTTGAAAGCGATGCCATAGCCCTCCGCGGCGAGCTGACAGGCAGATTCAAGATTTTCAAGGAGAAAGACCTGTCCCGGTTCGGCGTGATCATAAGCAATGGCAAGGTCTGTGTAGTGTCTGGAGGACTGCTCCGGCTTTTGCAGGATAAAACGTTCCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //