Array 1 269413-264177 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEV01000001.1 Salinivibrio kushneri strain ML331 contig-100_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================= ================== 269412 28 100.0 32 ............................ TGCCGCGCCTGCGAACTACAGCGCCGCAACGC 269352 28 100.0 32 ............................ TTGTGAAGATCGTTCAGAGAGAACAGATTACC 269292 28 100.0 32 ............................ ATTATCGCCGCCCCCGGCTTTGGCTCGGTCCC 269232 28 100.0 32 ............................ AATGATGTTGGTTTCGGTTTCTGCCTGTGAGG 269172 28 100.0 32 ............................ GAGAAGCGGTGACCGAGGCGCTGAATAACGAA 269112 28 100.0 32 ............................ ACACGCCGCGACATCGAGAATGTAATCTGGGT 269052 28 100.0 32 ............................ GTAAGCGCGATTGCGCATGCGAGTAGGCTTTT 268992 28 100.0 32 ............................ ATGTCGAGGGAAGCTAGGTGGACGTTCGCGGG 268932 28 100.0 32 ............................ GTGCCGCAGGCGCGTTCGTGACCAACCCTAAG 268872 28 100.0 32 ............................ GCCTAGTGACAGCATCAGGCCAAGGCTGAGAC 268812 28 100.0 32 ............................ TCACATCGCCCAGCGATTGGTGACTGGGTGGT 268752 28 100.0 32 ............................ TGGCCAGGGCATCATTGATAGAGAGCTGACCC 268692 28 100.0 32 ............................ TGTGAGCTGTGGCTTGTGACAAGGAACAATCA 268632 28 100.0 32 ............................ TTCCTATTAGCAAAAGGGGAATAACATGTCAG 268572 28 100.0 32 ............................ GATATTCCCCTTCGCGGGATGGCAGGGCTACT 268512 28 100.0 32 ............................ GGTTTCCGGCTGCCCGCGTTCACGCAGCACTT 268452 28 100.0 33 ............................ AGGCTGGCAGGTTGTCGAATGGCGTCTCAATCT 268391 28 100.0 32 ............................ ATAGAAATCGCCGCCAACGCCTTCTGCCGTGG 268331 28 100.0 32 ............................ CGTCGAAGTAGTTACCCGCAACTGATATTTTC 268271 28 100.0 32 ............................ ACGGATCTCAAACGCATCTGTTCCGAAAAACG 268211 28 100.0 32 ............................ ATAAAAATCACCCCCCGGATAGACCGTCTTTT 268151 28 100.0 32 ............................ TCGTTGCTCATTTCCCCGTCGAAGTAGTTACC 268091 28 100.0 33 ............................ AACCGAAGCGATTATGTTGATGGCTTTCATTTA 268030 28 100.0 32 ............................ TATCGCACTAGTTTGTGATACTGCTAAATCCT 267970 28 100.0 32 ............................ TTTCTTTGCTGGCATTGTCGCATTCAACTTAT 267910 28 100.0 32 ............................ ACGAGTCATCTGATTGTTTATATTCAACGCTT 267850 28 100.0 32 ............................ TAACGCTTGCATAGAGCGGCATACGTAAGCGT 267790 28 100.0 32 ............................ TCATCGATTCGCGCCTTGATGAACATCGCCAC 267730 28 100.0 32 ............................ GCCCTCGTTATCGAACCAGCTTCTGTGTAGAG 267670 28 100.0 32 ............................ TTGTATCACTAATTCCACCTACTCTGACTCTT 267610 28 100.0 32 ............................ TCAGCGCGCCGATGATATTGAGTTGTTGATCT 267550 28 100.0 32 ............................ AAACCAGCCGACATGACCAGCGACAGCGCTTG 267490 28 100.0 32 ............................ TCGCGTAGCCTTAGGCGGCTTTCGCCCGTATC 267430 28 100.0 32 ............................ ATTAGCCTTATCGCTCTCAGCCGGGCTCTCAG 267370 28 100.0 32 ............................ CCGGTGAGTGTTGAGGTTGCATCAAAAATACA 267310 28 100.0 32 ............................ AAAGTAAATCAAAGGGAGCCAATCGGCTCCCT 267250 28 100.0 32 ............................ GTGTCAATCGCTATGGCAAAGGCCGAGGGCTG 267190 28 100.0 32 ............................ AGTGTTAGTAACGCCTGACCATCCACCGATGG 267130 28 100.0 32 ............................ GTCAGCGAATAGTGCAGATATTGCAGGAGCTG 267070 28 100.0 32 ............................ ACTCCTAGCCCCTTGTTGTTGTCTCGTAATGC 267010 28 100.0 32 ............................ GCACTTGTAAACACGTAGAGCTGATGGGCGAC 266950 28 100.0 32 ............................ AGACTGAGCGCTTGCGCCCTTTTCCAATAAAT 266890 28 100.0 32 ............................ AGCCAAGGAACGTAGGCTTTCTCCCGTCTAAT 266830 28 100.0 32 ............................ AGTAACTTGTTGAACTCTGGTCTTTTTCTTGC 266770 28 100.0 32 ............................ ACCGACGGCACGGGTCAGCGGCTCCAGTGAAT 266710 28 100.0 32 ............................ AAAAACTTCATCGCCACCGCTCAACACCGAAA 266650 28 100.0 32 ............................ AGCGCATTATCCGCATTGCTTTGAAGCGATAC 266590 28 100.0 32 ............................ GGTAAAGCCAAAGAAAAGCGACGACAATGACG 266530 28 100.0 32 ............................ TCAACCACCACCGCCACCGAGCGACTTACCGA 266470 28 100.0 32 ............................ TGTGAGGTGCCTTCTTCGACCACGGTGACATA 266410 28 100.0 32 ............................ ACACCTGGCGCCTTCACCGAGGTAGGCGTGAT 266350 28 100.0 32 ............................ GCCGAGTTCGCTGCCAACTTTGGCGCCGAAGG 266290 28 100.0 32 ............................ GCGCTCGCCTGCGATTAAATCAACAAACTCAG 266230 28 100.0 32 ............................ GCGATTTTTCGCGCTGATTAGCTCCGCAAGCC 266170 28 100.0 32 ............................ GCTTCGATAACGCGGCCCTTAAATACTTGCTC 266110 28 100.0 32 ............................ TAAAGTGGGAATATGTCAGCTCCGACATGAGC 266050 28 100.0 32 ............................ ATGTACATACAGAAACTGTTGGTTCACCTAAT 265990 28 100.0 32 ............................ ACTAATTGATGGTCGATTTGCTGGATGGGTAC 265930 28 100.0 32 ............................ TCACCGGCGTTCGCCCCATCAACGTACACAAT 265870 28 100.0 32 ............................ GCGCCAATAAACGGGGCTTTGGGTGCCAGTGC 265810 28 100.0 32 ............................ ATGAGCATGAACTCAAGCGAAAAGATTAAATC 265750 28 100.0 33 ............................ CATGCGCTTAGCGGTATCAAGACGACTCTCCCT 265689 28 100.0 32 ............................ GTGAATGGGATCATGACAATGAAGCATTCAAA 265629 28 100.0 32 ............................ ACGTTGGTGACAAGTACAGAACCAGCCAATAT 265569 28 100.0 32 ............................ CACTGAATAGCAGTAAAGCCACGGCTGCCAGA 265509 28 100.0 32 ............................ TATCGATTCCATCTTTTTCGCCCATTGCTTAT 265449 28 100.0 32 ............................ ATTCATCGAGTGGAAGCGCGAGCTACAAGAGG 265389 28 100.0 32 ............................ GTGCTAAACCTGCGCGAGCAAGTATTTAAAGG 265329 28 100.0 32 ............................ TTTGATGACCGCTTTTATGGCTGCACCGGCAC 265269 28 100.0 32 ............................ AAATAGATGCCGTAAAACACAAAGGCGCACAC 265209 28 100.0 32 ............................ CTGTTGTTCGCATGGGCAAGTCTATCGCTCGC 265149 28 100.0 32 ............................ ACAGTGAGGGATTTGCAGGGGCGCGGCATCAA 265089 28 100.0 32 ............................ TAGATAAGAGAAAAAGGTTCGAGCATAGGATG 265029 28 100.0 32 ............................ TTGAGTGAGTGCTGGAAAATGGCTGGCGACGC 264969 28 100.0 32 ............................ GCATTCTCTTTGCAGTCTACCCAACAACGCAT 264909 28 100.0 32 ............................ TGCCTCTCGTGATTGCTCGGTCATGTAAGCTC 264849 28 100.0 32 ............................ CTTATCCTCAGCAATGATGCGGATATCCTCAC 264789 28 100.0 32 ............................ CACAACTCGTTGTCATTTCGCCACGCTTTAAT 264729 28 100.0 32 ............................ CCAACACGCCGTCTACCGTTGGCGCTATCAGA 264669 28 100.0 32 ............................ TAACCAAAAAATCTCGCCTTATCTCTTTGTTG 264609 28 100.0 32 ............................ TGTGGCGCGGTGAATCGTCATCACGTCACCAC 264549 28 100.0 32 ............................ TTTTCATCAACAAAGCTCACCCGCTGACTGGT 264489 28 85.7 135 .....................G...GTG ACACAAGCCCCAGCAAGGTGTTGGATAGGTGCACATTTCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTAGCCTCAATGTCGGATGGCGCAGTGCAAATCACACCAAGCTTGTACGATCGAGTTAGCGCTT 264326 28 85.7 32 ..C...CTA................... CACCAGAGCGGTCTCCCGAATCGTTGCTCATA G [264322] 264265 28 96.4 32 .............A.............. ATGTTCACAAAGACTCGAAATCCGACTCAGCG 264205 28 96.4 0 ...........................G | T [264180] ========== ====== ====== ====== ============================ ======================================================================================================================================= ================== 86 28 99.6 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGCAAGACTATGCCTATTTTAAACGTTGGAACTACAAATCGCCGCAGCGACTGTATAAAAACCTCGACCGGCGCGCGGCCGCGATTGCCAGCAAAAATGGTTACGATGAGGCGGAAGTAAAGCGTCGTTTGTTGGAAAACATTAAAACGGACGACAAACGCTGGTCACTGCCTTTTATTCAAGTGACCAGCCTGTCGAGCCAAAAACGAGCAGGGCAGCCAAATACCGAGTTTGCTTTGTACATCGAGCGGGAGACTACCAAACAGCCGCTAAACAAGGACCAACCGTTCACCTGTTATGGGCTCAGCCGACGAGAACCCGATCAGCAATCAGCGGTACCGTGTTTTTGAGGGGGAAACCCCTCTTTACCCCTTCTTTTTGGGCTCTTTAAAAATAAACAGCAAATACAGTGAGTTACAGCAGGCCATTTTTAACAAGGGTAAAAGACGATTTTTATCCTAACGGCCTGTTGTACCTGACGATTATTACGTTATTCTATT # Right flank : AGAACGAGATCTCGTTGGGTTGCGTCTTCATTTACCTTCGCTAGCGCCGATTCGGCGTTGCCCCAATGATCTTTAAGTCCGCTTTTCTGCGCTTTTTCATCGTCACGTAGAAATTCTCGTGCGAGCTGATATTAAGCAGATAGAGCTCGAGTTTGTTTTCAACCCACGCGTAGTCAAGCAACACCTCTTGCCTGTCGAGCTTGAACTTGTGCACCCAAAGATAAGAGAGGTCGCCTTTTTTCTGGGTGCCGAGCGTGGGCTCTTCAATAATTCTGTCTATTTCGTCCTCGACCACTTCACATTGCGCGTCGGACAACTTATTCATCTGATTTTCAAAAACACGAGAGACGAAAACATCAATCTGATTGTCGTGGGGTCCGTCGCTCATAACGTTTTACCTTACCAAGTTTGACTTCTTCAGATGCAATCAGGGCTTCGTGCACAAAGCTATAGGGTAAATCAGGGTTCTCAGTCATGATTTTCCCAATTTTTGCCCAGTA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 280571-280123 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEV01000001.1 Salinivibrio kushneri strain ML331 contig-100_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 280570 28 100.0 32 ............................ ATTACTACTGTGATAACTCCGTACTTAACTCA 280510 28 100.0 32 ............................ GTTAAAGATGCGCAACACATCTATGCGATTGC 280450 28 100.0 32 ............................ GGTAGGTAGGTGACGACCATCGCGTAAATGCT 280390 28 100.0 32 ............................ TGACCGCCTTGCGCCTTGGTCGCGGTGTCGTT 280330 28 100.0 32 ............................ GTTGATGACTTCCTGCCGGCGCTACGCCAGAT 280270 28 100.0 32 ............................ GGGTTAAGGTCGAGGCTTCAGCATTATGGGTT 280210 28 100.0 32 ............................ CGCGCCAAGGTTGTACACAAACGACACGTTCA 280150 28 85.7 0 .....................G...GTG | ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCTGTCACTGTTGTCACTTTTTGGCTGATTTAAGTTTGTACTGTGTCTTACAATGGCTACGCATCACGTGCCTCGAACGCAGGGTGGTGTGTTTAGTTTTGCGCCCGCGAGTCCGTTCGCGCCATACTTTGAAGCTCCGCGGTTTTAATTCACTTCGCATTAACGCAATCACATCGTCTTGGCATAGCCCATAGAGTGCTTCAATCGCCTCAAACGGGGTTCTATCTTCCCACGCCATTTCTATAATTCGGTCAATCTCTCCCGGTTGTTCGTTCAATGCCATGTCGGTCTCCTTGTGCTGGTGGCCAATAATACGCGTAGAGTCGGAAAAACCGATCAGCGTGTTCCTTCTAACCCATCAATGCTGTTACCCTTGTTTTTGGGCTCTTTAAAAATAAACAGCAAATACAGATAGTTACGGAAAGCCATTTTTAACAAGAGTAAAAGATGATGTTTATCCTAACGGCCTGTTGTTACTGACGATTATTACGCTATTCTAT # Right flank : ACACAAGCCCCAGCACGATGTTGGATAGGGGGACATTGCCAACGGGCGCCTGTCACGATCAGGGGTTAATAGTTGGCTCCGATGTCGGATGGCGCGCGGCGAAAGTCATACCAAGTTTGCACGATCGAGTTGGCGCTTATGCCGACCTACGCGAACTTTAACGTCGGTGGTGCCATTGGCGACCGAGACACAAGCCCCAGCACGGTGTTGGATAGATGCACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCCTCAATGTCGGATGGCGCAGTGCAACTGGCGCCAGTTGCACTGCGCGCGACGCAAATCACACCAAGCTTGTACGATCGAGTTAGCGCTTGTCCGACCTACGCACAGGCAGCTTAGAAAGGATTGAATGAGAAGTCTGATGTGTGCTGCTGTAAATCCAACGTTGTTCGGCTGAATCAATATGAGTTAAAAAGTTGGGAGTCACTTACAAAAAGCGCTATATTCATTATTCATATTTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //