Array 1 66365-67642 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_POKK01000041.1 Streptococcus suis strain 1381 SS_1381_Contig41, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	================================	====================================	==================
     66365	    32	 100.0	    33	................................	TACCAACAATAGCAATCTTTTCATTATCATTGA   	
     66430	    32	 100.0	    34	................................	ACTTTTTAAATAACTTGTCTGCAAGTCTAAATGT  	
     66496	    32	 100.0	    34	................................	CGCTTGATATTTGTATAATTCAACGACTAAATTA  	
     66562	    32	 100.0	    34	................................	CAAACTATCCAGCAGTAGAGCCAGCTGGTGATGA  	
     66628	    32	 100.0	    34	................................	TAAGCTATACATGGAAGAATTGATACATGAGGAC  	
     66694	    32	 100.0	    36	................................	ATTGTCACTGTTTGAAAATATCCATTTCTGGTACAC	
     66762	    32	 100.0	    35	................................	AAGTGTCCTAACCGCTTGCTTCCAGATTGGAAGTA 	
     66829	    32	 100.0	    33	................................	TATCTGGATAGGTGAAAACCTTGTCAACGGTTG   	
     66894	    32	 100.0	    35	................................	AAGTTCAAAGCCCAAGAATTTTTCCAGTTGTTCAA 	
     66961	    32	 100.0	    34	................................	TCCTTTGATTAAGCTAAAATTGTGATGTTGTCTT  	
     67027	    32	 100.0	    35	................................	AGTTGCATTGGAACACGGTTCGGGGGTGTAGTGAA 	
     67094	    32	 100.0	    35	................................	ATTATCGCTGGCATCTTCGAAGGATACCACATCCC 	
     67161	    32	 100.0	    35	................................	AGATTTGATACCAGCTTTATCGCGCATCTTGGCAT 	
     67228	    32	 100.0	    35	................................	TCCGCCAAAGACTCTACCTAAACCGTCTCCAAGAA 	
     67295	    32	 100.0	    34	................................	ATTCGTATAATAAAATTCTCTATTAGAATAAACA  	
     67361	    32	  96.9	    33	....................A...........	ATCTAGTTCCGATTTTTTTATCCGTTTGGTACC   	
     67426	    32	 100.0	    34	................................	AAAATCATCGATTGACAGAGAACACTGGTCAAGC  	
     67492	    32	  96.9	    23	......................A.........	AACGTACCTGCTCGGACGGACCG             	Deletion [67547]
     67547	    32	  81.2	    32	.......T..T....A....AC..G.......	TGGACGGCACTATGGGAACACCTGGCACATCG    	
     67611	    32	  68.8	     0	....T..T..TTG..TA.A...A.G.......	|                                   	
==========	======	======	======	================================	====================================	==================
        20	    32	  97.2	    34	GTCGCACCCTACACGGGTGCGTGGATTGAAAT	                                    	       

# Left flank :   CAAAAGCTATTCGAGGCGAGTTGGATAGTTATCCTCCGTTTATGATATAGGAGCTATATTATGATGGTATTAGTGACCTATGATGTCAATACAGAAACAGTAGCTGGACGAAAGCGATTGAGAAAAGTAGCCAAGCTGTGCGTTGACTTTGGTCAACGTGTGCAACATTCTGTCTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAAGTAAAGAATAGATTATTGGAAATCATTGACAAGGAACAGGACAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGGCGAGATACTAGTTATGATCCAGATCAAGGAGTCCTTCTGTTATAGATTATCTATGCGAATCGGACTTACTCATTAAATGTGAGGAGATTCGCGTGAAAAGCATATGAAAAAAAGTGAAAATAGAGTGAATTTATGGTATATTCTACATCTGTAGAAACTTTATTTTTTACAAAACAGTGTCAAAAGGCACT
# Right flank :  TTGTTTTTTGCTTAACACAGTATATCTGGTATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACGGCTTACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGCTACAGATCACAGGCGTAACGACCTCTCATGCCACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGTGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGA

# Questionable array : NO	 Score: 9.09
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACCCTACACGGGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [7,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-4.90,-6.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-18] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.68,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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