Array 1 335565-338498 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCGV01000006.1 Ruminococcus sp. KGMB03662 KGMB03662_contig00006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 335565 32 100.0 36 ................................ GACTATGTACCTTACGATGGATATGCAGCAGTACCT 335633 32 100.0 34 ................................ AGACAAGACAGTGATAGCATCCATGCATTTATTG 335699 32 100.0 33 ................................ TTGTGTTAATTCGTTGTTAGGTAATGTATCCAT 335764 32 100.0 34 ................................ TCTCATAAGCCTTTAGCACCCCTAGTTCTCTATC 335830 32 100.0 34 ................................ CTAGTCTAGCGTGTGGTTTTTCGTCGTTACGCTG 335896 32 100.0 36 ................................ GGGTGCAAATATTCTCAAAGGCATTTTGAACGGATT 335964 32 100.0 33 ................................ GTAAACCCTCGTCATCAATCAAAAATTCAGCGT 336029 32 100.0 33 ................................ CTCTCATCATGGCAAGTGAATTGTAAATGGCTG 336094 32 100.0 34 ................................ TCAATTCCACTTCAAAATCATCAAGAACTCTTGG 336160 32 100.0 34 ................................ GGAACTTACAAGGGTGAAACGATATATTTCAAAG 336226 32 100.0 32 ................................ CTTTTTTGAAATATCCCAATCGCATACACCAA 336290 32 100.0 36 ................................ GTTATAAGTGTTCATTTCGACAATCTAAATGTGCTG 336358 32 100.0 33 ................................ GCTTAAAAATGTCTGATTTACGAACCAGCTTAT 336423 32 100.0 33 ................................ GATTTTTAAGGAGGAAGTCATATGGACCTATAC 336488 32 100.0 34 ................................ AAATTTTGTTACCAAGCTATATTTTTTCTGAGTT 336554 32 100.0 34 ................................ TTATCGACGAGGGCAATTTTGAGGAAGCCGAAAA 336620 32 100.0 34 ................................ GTACTGCTCAGGGGTTATCTTCCCCCTGTCGGCA 336686 32 100.0 34 ................................ GGTGTGACAGATACAACACGAGGGCGTGTGCTGG 336752 32 100.0 33 ................................ CAAGCAATATCATTCTTGGAAGCGGCTATATCT 336817 32 100.0 32 ................................ TGTCAGCGTATGGCTTCGGGTCGCTCACGCTG 336881 32 100.0 33 ................................ AGTGCCTTAGCTATTCCGTTGCTGTGTCATGCA 336946 32 100.0 33 ................................ TTTTGACATTCATTCGCCTTCAAGGGTCATGGC 337011 32 100.0 35 ................................ ACTTTCGTATTTCTGCCCTGTGATTTCCTCGTACG 337078 32 100.0 34 ................................ TCCACTAAATACAGATAAAATAATGTATCCGTGT 337144 32 100.0 33 ................................ TGGTGCGCCTATCAAGTTTTGGAGCGACTATGT 337209 32 100.0 33 ................................ GATAGCGTTGATACAAGTCTGAGCCTCTGCCTT 337274 32 100.0 35 ................................ CGGATTCGGACCGGAGAGCAAGATAATGCGTGCGC 337341 32 100.0 35 ................................ GTTTATCCATGTTGCGAACGGCAATTCCGTTTCCA 337408 32 100.0 34 ................................ TCCACGTCAGCTTCGACCTGTTCACCGATTGCCG 337474 32 100.0 33 ................................ TGGTGCGCCTATCAAGTTTTGGAGCGACTATGT 337539 32 100.0 33 ................................ GATAGCGTTGATACAAGTCTGAGCCTCTGCCTT 337604 32 100.0 35 ................................ CGGATTCGGACCGGAGAGCAAGATAATGCGTGCGC 337671 32 100.0 35 ................................ CGGATTCGGACCGGAGAGCAAGATAATGCGTGCGC 337738 32 100.0 35 ................................ GTTTATCCATGTTGCGAACGGCAATTCCGTTTCCA 337805 32 100.0 34 ................................ TCCACGTCAGCTTCGACCTGTTCACCGATTGCCG 337871 32 100.0 35 ................................ TCATGTGTATGTAACTATTTTCCGATACTTCTGCA 337938 32 100.0 33 ................................ TGCCGTTTTTCAATGCACTGGATATTGTTACCA 338003 32 100.0 33 ................................ CTAATATAAGCAAGTCGGAAATCTTCTTTAAAG 338068 32 100.0 33 ................................ GTCATACTTGTACTTGTGTGATTTGCCATATAA 338133 32 100.0 33 ................................ TTGGAATGAAAGACACAGAGGAAGAGGAAGCAG 338198 32 100.0 35 ................................ TAAATTATTATGAAATTAATTTGAATTTAGCTAAG 338265 32 100.0 35 ................................ CAACCTCAATGTTTCGCAGGAAATCATCATCAATC 338332 32 100.0 36 ................................ TTTTCAAATAATGTATGTTCTTTTGCACTGCCACCA 338400 32 100.0 35 ................................ ATAGCAGAAAAGATACACAGCAAAAACAACGTTGT 338467 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 45 32 100.0 34 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : GGCGAGCTAGATGAGTACCCGAACTATTTGCTGAAATAGAGGTGATATAAATGATGACCTTAGTAAGCTATGATGTATCAACAACAGATAATAAGGGTAAAACAAGGCTGAGAAAAGTGTCGAAAGAGTGTCAAAATTATGGACAGCGAGTGCAGAACAGCGTGTTTGAAATAGACGTAGACTATGGCACTTTTCTGAAAGTGAAAGATAAACTTCTGAAAATAATAGACCAAAAACATGATAGTCTGCGGATATATTACTTAGGCAACAATTGGAAGCATAGAGTAGAACACTACGGCACCAAAGAGACCTATGACCCTGAAGGCGTCCTAATATTTTGACCAGCGTACCCCAAGTGAACCACAAATCCCTAGTAAGTTCGCATGAAAATACCATGCTATTTGTGAATGCACAGTGAACAAAATCAAGTCGATACACATTAAATAAAAAAATAAGTCCGCATCACGTTGAGCAAGCACCAGATATACACAACATCAAGG # Right flank : TGATAAGTATTTTAGAATAAATAAGGCAGCTTGATTAAGGTCGGGCGGTATTTGTATACCCAAATACTATACATTTTTCATGTGTTTTCCGTCAAATCCGCCAATTCACACCCCGAAATTTGTGCAAACAAATGATTTATAATTTAATTTGGCAACATTTCTGCAATTGTTGCATTTTTTCTGCAACAAAATACCCACTTTTCGTGTATAAGTAGAAGAGGTTTCACCACAAATCGGAAACCTTGCGGAGCGACAGTGTATGAGGAAACATTTTGTCAACGTGAGTTAGGTGAACACGATGAGAGGTTCTGATCGCACAGAAAAGCACTTCCTGCACTCCGTCTGAAGTTTGAAAATTGAATATTTATACCGACACACCTTAGCTATACCCCATGAGCATACTGCTAAATTTAATTGTTATAACCGCCTGTAGGTTTGTCAATCATATTGGACACTATTATTAAGAAATTCGATAGGCGAAAACCATTTGAGGGGACGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 44086-43852 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCGV01000005.1 Ruminococcus sp. KGMB03662 KGMB03662_contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 44085 35 100.0 30 ................................... TTGTTTGCTGGGTTTCCTATTAAGGTATTC 44020 35 97.1 31 .....................T............. TTGAAATATCTTGCCGAGATTGGATTGAAGA 43954 35 100.0 31 ................................... ATAACAAGAAATTCCATCCAGATCTGTGTGC 43888 34 88.6 0 ..............A...........A-......T | CGG [43856] ========== ====== ====== ====== =================================== =============================== ================== 4 35 96.4 31 TACTACACTGGTGCGAATTTGCACTAGTCTAAAAC # Left flank : AACAACAGACGGGAGGTGATAAAAATGGGAAAGACGATCCTTAAGGCTATCATTGTAGCTGTACTTGACTGCGCTATCGCAGCTGTCAAGGAGATTGGGGAATGAGATGAAATAACAACAGACGGGAGGTGATAAAAATGGGAAAAAAGATACTTACAACTATCCTTTTATCGGCACTTAACTGTGCGATAGCAGTTGTTAAGGGAATTGAGAGCTGTGACGAGATCACAATAGACTAGGGAGTGATAAAAATGGGAAAGACGATCCTTACGGCTATCATTGTAGCTGTACTTGACTGTGCTATCGCAGCTGTCAAGGAGATTGGGGAATGAGATGAAATAACAACAGACGGAAGGTGATGAAAATGCTTTATATAAAACAGCCACTTTCTATTGACATTTGTGTCTGAAAATGGTATAATATATATGTATTAAAGCGTCGATAAGATAAGTTTGGTGTTTTATCACAGAATATCATTGATTATTTTGTCAACTTTGACC # Right flank : TTAACATCAAAACCAACAAATAAAAAATCCCTTAACGCTCAATGCGCTAAGGGATAACTAATATAAGGAGTAATATTTATGGCAAAAAAGAATAAAATGAAGCCTAGAGAGCTGCGTGAGGCTCAGAAAAAAGCCAGACAGCTCAAAGCGGCTGAGATAAATAATAACGCTGCTCCTGCGATCGCTGCCATGCCTGCTGCAGAGGTCATTGCACCTGTGGCAGAAAAGAAAAAATCCTCCGTAAAGGCGGCAGGAATGAAGTCTATTCTTGTCAGCGAAAATAAAATGTACATAACCTCTTTCGGCAAGGGCAATTCTGCTGTGCTTGAATATGAGGTGGATAATAATGACTACAACCAAACTCAGCTTTCCTTTAAGGGCAGCAGCAATATCGAGCTTCGTGGTGTAAACGAAGTAAACATCACTTTTTCAAGCAAGCATGGCTTTGAGAGCGGAGTGGAGATAAACACTTCAAACCCTACTCACAGAAGCGGTGAAAG # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACTACACTGGTGCGAATTTGCACTAGTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //