Array 1 1113187-1112441 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDQY01000010.1 Listeria monocytogenes strain A51 contig000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1113186 29 100.0 35 ............................. TTCGCTAAAATCATAGCAAGCTCTAATTCAGCAGC 1113122 29 100.0 38 ............................. AATGAAATCGATGGAATTAAGATTACAAGAGAAGATCC 1113055 29 100.0 35 ............................. TTTGCTCTTACTACATGAATATTTGTACTACTCAT 1112991 29 100.0 35 ............................. ACTGTCAGTATTCTTGTTGGGGCGGTTCTAGGGGC 1112927 29 100.0 34 ............................. GTTATATCTGTTTTACTAACTTCTACATCTCCTT 1112864 29 100.0 37 ............................. CACGAATCAATTCGATTAACATGATACGGACGTCCCG 1112798 29 100.0 35 ............................. TTTGACATGTTGTAGGCGTTAAAGAACAGCTTGGC 1112734 29 100.0 37 ............................. CATGCTACTAGTAATAGTGAAAACGATAGTACCATCA 1112668 29 100.0 36 ............................. GGTGTTTAGCACGAATCAATCATCCAGGTTCACAAA 1112603 29 100.0 37 ............................. GATGTATCAGATACTGAAATACTTCTGATTTGACAAG 1112537 29 100.0 38 ............................. ATGATATATCGCAGGATAGCGTCATTAGCATTCAATCC 1112470 29 86.2 0 ...............C......CC....C | A [1112445] ========== ====== ====== ====== ============================= ====================================== ================== 12 29 98.9 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCGGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTGATTGTATTTTCTAGTAGGCAACAAAGGTGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGTAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGGAAATCTGAAGGGATAAGTTATGATTTTTACGCGATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : TTCCTCTCAACATCCAAACTCCAAAAATAAAAAGACCTGGACCTCAATCCAAGTCTTTTCCCATACCACCTAAACCAACAAAACCACAACCAACGCCAAAATCGCCGGCAAACCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCAGCCCGCCAAACAGCGCCGCCACAACTACACAACTCAAAAAGAAAATCTGCACAGTTTCAGCAAACCCTGCACCTGCAAAAAACAACCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTTTGCACTTTCTTATTCGCAAGCAGTTCCTTCTCCACGCCAAATGTCTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCAATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1129584-1128786 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDQY01000010.1 Listeria monocytogenes strain A51 contig000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1129583 29 100.0 35 ............................. ACGATTGAAAAACTGCAAAAGGTCGCAGACTTCTT 1129519 29 100.0 37 ............................. TTTCCCACTACTGCCTTAAAATGCGTGCCTGGCGTGA 1129453 29 100.0 34 ............................. ACATGCGACACAGTTCGCGGTGAAATTCCGCAGC 1129390 29 100.0 36 ............................. ATCTCTATCAATTGGCAAAAGTGAATTTGTGGTAGT 1129325 29 100.0 34 ............................. TTTCCATTTGCACCAGATTCATAAGTTCCGTTGT 1129262 29 100.0 35 ............................. TTGTCATCATATTTAAAAACTTTTATTAACTCACT 1129198 29 96.6 34 ..............T.............. ATTTTTAACATAAAAAATAAGCCTACTCGGCTTT 1129135 29 93.1 35 ..............T...A.......... GCGCTCTTATTCTTAGAATGCAATCCCGCGTCAAT 1129071 29 93.1 36 ..............T...A.......... ATGTGTAATTTTATTGGCTTCATTGATTAGTGTTTC 1129006 29 96.6 35 ..............T.............. TTATGACTTCATCACCTTCCATGTAACACTATTTT 1128942 29 93.1 35 ..............T...........G.. ATCACTCCCGGCTTATCTAGCGGATTCCCTTGTTT 1128878 29 96.6 35 ......T...................... GGAATCACGGACAGTCAGGCGAAGATAACTAAACT 1128814 29 79.3 0 ......A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 13 29 96.0 35 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGTAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGAGGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCCTCCATACACAACTCCACCACCATCCATCAAAACCAAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATAAAATTATATGCTTCTACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCACCGCGTAAAAATAATGTATATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCAC # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //