Array 1 274427-275237 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYFN01000001.1 Listeria monocytogenes strain 41F09 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 274427 29 100.0 42 ............................. ACACAAATATGAAAAAACTTCTATTAAAAGCAATTCCATCCT 274498 29 100.0 36 ............................. AAACCTATCACATTTAAGTATTTAGAGATTCCTAAA 274563 29 100.0 36 ............................. GTAGTTTGCGAACGTTTAAAAACATAATTTGAAAAC 274628 29 100.0 35 ............................. ACAGATCAAACTCCGGAAGGGTGATTGTAAATGGC 274692 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 274757 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 274821 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 274884 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 274948 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 275013 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 275077 29 100.0 37 ............................. TTGGTTCCTTTGGAAAACAACAATAGCGTGTAGTATT 275143 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [275166] 275209 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ========================================== ================== 13 29 96.3 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCAAGTATCAAAGAAGTTATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATTTCTATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTTGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTAATACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 291531-295268 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYFN01000001.1 Listeria monocytogenes strain 41F09 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 291531 29 100.0 34 ............................. AGTTTTAGAAGTATGTTAGACGTTGACGAAAATC 291594 29 100.0 35 ............................. TCAAGCTGGTATGCACTTTTTGAGGTAAGCTATTG 291658 29 100.0 37 ............................. GAAAAAGAACCAGTTAAAGAACCCGTGAAAGAAGAAC 291724 29 100.0 36 ............................. AAAGAAAACTTGCAGCAGAATGACGCAAATCATGAA 291789 29 100.0 38 ............................. AGAAATTCTCATGGCGCTAATAACCCCATGCCAGACGA 291856 29 100.0 34 ............................. CATTTCAATCACTTCTTTTGATGTAACATTAAGC 291919 29 100.0 36 ............................. TGTAACTGCAAACGTCTTTCCGCAAATTCGTGTAGT 291984 29 100.0 36 ............................. TTATCCATTCCGTCATATCCCCACGCATCTGTTCCA 292049 29 100.0 37 ............................. AGAGTTTCCAGCTGTAAGGCCAGATATTGATAATTTC 292115 29 100.0 36 ............................. TATGAAATTATCTGCGAAGAGGGAAAACTAGACGAT 292180 29 100.0 36 ............................. AGCGGTTTTTCTTCTATAGAAGTAACTTGCTTTTGT 292245 29 100.0 37 ............................. GTTTATAGTATGTAAAACAAACACAGGAAAATATATC 292311 29 100.0 35 ............................. TAAATTGTTAAGCTTGTCAACAACCTGCAAGAACT 292375 29 100.0 37 ............................. GTTTCCAGTTTCTTCTATATAAACAACAAAAATAAAA 292441 29 100.0 39 ............................. ACGAAAATAGCTAAATTGGATTTACTTGAGTCTTTTTTC 292509 29 100.0 37 ............................. ATTTAAGTATTAATGTTTTTAAAAAGTTTGATTTATT 292575 29 100.0 38 ............................. TATCAAAAAGCTTGTGCTATTATGGAAAGTCGTTGGGA 292642 29 100.0 36 ............................. TTTAATAACTATGACAGTGAATTTAAAACGAAAGCG 292707 29 100.0 38 ............................. TCTGGAGAATCTGATGTTAAAATCTCTGATCATGTTGT 292774 29 100.0 38 ............................. AGAAATTAAAGAAGGTAGGGCATTCGTTGCACCGGAAA 292841 29 100.0 35 ............................. AAAATTAGCGTTCCAAAAATAAGACCTGTCGCAAC 292905 29 100.0 34 ............................. ATACTAAAACTTCGCTCATTTTCCGCAACTCCTT 292968 29 100.0 35 ............................. TTAAGAAATATGATTGATTCTCTGGATATCACTTT 293032 29 100.0 37 ............................. CCTCCACAATCACTCGGCTTTCTTCGTCTTTATCGAC 293098 29 100.0 36 ............................. ATTTAACAAATCAGCTAAATCAGCGCGACTCTGATA 293163 29 100.0 37 ............................. GTCGCTAGAGCTAAAAAATGGATAGAGGAACAACAAG 293229 29 100.0 36 ............................. TCAACTAATATTAATATCTCTTGTGGATTGGCCATT 293294 29 100.0 35 ............................. ACTTGAAGGACGTGCTTCAAAATATTTAGTTGCAT 293358 29 100.0 37 ............................. TCTGTTGTAACTGTTGTGCCTTCCACAGCGTGCACTT 293424 29 100.0 35 ............................. ACATTTTGCACGCACCAAGCTTGACGGTCTGAAAC 293488 29 100.0 35 ............................. TTTATCTTTATCTATTTCTCCAGTAATAGAGCACG 293552 29 100.0 34 ............................. ACATTTTTATCTGAGAAAGGGTTTAGGGAAAATT 293615 29 100.0 35 ............................. AAAAAAACAACTGCGCAAGAAGGGTATGAGCAATT 293679 29 100.0 36 ............................. GTTGGACACCGTCAGCAGAGCTTATAAATCCACTGT 293744 29 100.0 36 ............................. TTTTTCCATTCTTCTCGCCGATGTATTCCTTTTCTC 293809 29 100.0 36 ............................. AACAAAAATACGTTATTTGTTCGATGTAATGTAAAA 293874 29 100.0 38 ............................. TCAACTAACGAGGCAACAGGTGTTTTATAGCTGTAAAG 293941 29 100.0 36 ............................. TGGTAAATTTTATAGGAATGTCAACACCTTGAATTT 294006 29 100.0 36 ............................. CCAGAAATGGAGTGCGCGGTTGATTTTGGATTTAGC 294071 29 100.0 37 ............................. AAGAACATTAGATGAACTTAAAGCGTCTGTTGAACAA 294137 29 100.0 35 ............................. AAACCAGAGCCAGAAAAAGAAGTTGTGAAAGAAGA 294201 29 100.0 37 ............................. ACGTCACTTGTTTTTGCCTTTGTTTTCGCCCTTTCCT 294267 29 100.0 36 ............................. GTTGAAAAGCGCACCATTGTTTTAATTTTTTTAATT 294332 29 100.0 37 ............................. TTTTGTCGCATAAATTCTTTGATGTGGCGGACTGACG 294398 29 100.0 35 ............................. AACAGTATCATCACGTTGTTATTGCTGTCACCTGT 294462 29 100.0 36 ............................. TAACCAAGCATTGCCAAAAACTCGTCTGTTGATAAT 294527 29 100.0 36 ............................. TTCTATTGCAGAACAGAATGAATTGTATGCACAAGG 294592 29 100.0 37 ............................. TCGTTAATCATAATTGATGAAAGTCATCATGTGTTAG 294658 29 100.0 36 ............................. ACGGGTACCAGCTTTGATTTGCCGTTTTCAATTATT 294723 29 100.0 35 ............................. TTTATCACTCCTATGCTTTTCTTATTTCTGTAAAT 294787 29 100.0 35 ............................. GCTTTTTTCAACAATTTTATCACCAGATGTCATTA 294851 29 100.0 36 ............................. TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC 294916 29 100.0 36 ............................. TTAATAAATCCGATGGTGATGCCTATGTTATACGTC 294981 29 100.0 35 ............................. TAAAACATCGCTTCGTTATACAATGTCTTTTTATA 295045 29 100.0 35 ............................. TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC 295109 29 100.0 37 ............................. CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA 295175 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 295239 29 93.1 0 .......................A....C | C [295262] ========== ====== ====== ====== ============================= ======================================= ================== 58 29 99.9 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACTAAAATCCCCTTAGAAGAAGTCGCCCCTCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCAGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //