Array 1 202192-196151 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072649.1 Chloracidobacterium validum strain BV2-C chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 202191 36 100.0 35 .................................... AAATTACCTGGAGACGCATGCCCACCGGGCCTATT 202120 36 100.0 39 .................................... CGTATCGCTACATCCATCGCCTTCTGCGGCGGTTGGAGG 202045 36 100.0 36 .................................... GGGGTTGGACGCCCATGGTTTGGATGAGGTTGGCAA 201973 36 100.0 35 .................................... GGCGCGGGGGCTGACCAGGTGGAACGCCTTGGCGA 201902 36 100.0 37 .................................... GTCTTTCGGCGGAGTCAGTTGGAGCTAGCCAATTCCA 201829 36 100.0 38 .................................... CTTGAGCAGCTCGACCAGGGACAGCTCCCCGGCCTGAG 201755 36 100.0 36 .................................... TTAGACGGACGCCGCTTGGCTACGGACTCTGGAACC 201683 36 100.0 36 .................................... GGTTGCTGTGGATGGAGGAGCGTGACACCCTTGGTC 201611 36 100.0 36 .................................... GGTCAGGCTGGCGACCTACCGGTGGTCGGTGACTGG 201539 36 100.0 37 .................................... ACCGTATTCCGACGTTGCCGCCGACAGGATCAGTTTC 201466 36 100.0 36 .................................... TCTGGCAGTGAGCTGGCCTCGGTGCCGGGGCTGGTG 201394 36 100.0 36 .................................... ATTTTCACCGGTCCGTCCGCGATGGCGTCCAGAAAG 201322 36 100.0 37 .................................... AGTGGGGTGATGGCGGCGGCCGGCTCCCCTCTGTCAT 201249 36 100.0 35 .................................... GGTCAGGTCACGGCGAATCGGCGTCGGCACCAGAC 201178 36 100.0 36 .................................... TAAACGGGTATGGGTTTCAACGTTGCGGCTAAGGAG 201106 36 100.0 35 .................................... TGGTGAGTGTGCTGGTGCCAGAAAGTGCTATCCGC 201035 36 100.0 36 .................................... TTATAATTACTACACAATTCAATTTACTCTAAAGGT 200963 36 100.0 36 .................................... TCTGTTATACTGTTCCGTTTTTTTTTCCTTGCCAAG 200891 36 100.0 37 .................................... TTCCTGATAAACACGCTGATGACCAACCACTCGGCTT 200818 36 100.0 37 .................................... CAGGTGATGCGTTCCCGGCGCCGCACCGTCACATTCG 200745 36 100.0 36 .................................... GCCCATGAGCACCTGGCCGGGATTCCCTACTGGGGG 200673 36 100.0 37 .................................... GCCTTGTGGGCCGCAAGCGCCTGGACCTGCGCCGCCC 200600 36 100.0 37 .................................... TACTCCATGATGGACAGGCGGTGTCCATCGGTGGCGA 200527 36 100.0 37 .................................... GATCTGTGCTTCATCCTGGGTGTAGTAGGCCAGAAAG 200454 36 100.0 35 .................................... CCTGGTGATGGCTTCGTCGGAGAGGATGTTTCTGG 200383 36 100.0 39 .................................... GTCGCCAGTCAGACGACTATAAGCCAGGTGATGGGGTGG 200308 36 100.0 35 .................................... AGGCCGGGCTGGTGAAAGCCCTTGCCAAAGATCAA 200237 36 100.0 36 .................................... CGTCTTGGCCGCCGTGAGACCACCGCCATAGGTGAG 200165 36 100.0 37 .................................... ACATGCCTTCCGCTTGGCGGCGGTGTCTGGCAGACGG 200092 36 100.0 37 .................................... AAAATTCTCATGCGTGGCAAGGAGGTGGCAGAGGGCG 200019 36 100.0 37 .................................... AAAAATGAAAGTCCAACCTGCTTGGCCAGCCGCTCAT 199946 36 100.0 36 .................................... AGTGCCGCTCGCCCACGCGCGCGGCGTCGTATCCAG 199874 36 100.0 35 .................................... GGGCTGTTGATGAGTTGGCTCAAGTCCTTGAGGCC 199803 36 100.0 37 .................................... TTCCATGACCTGGCGGCGGGTTACGATCCCCTGCCGG 199730 36 100.0 38 .................................... CCCTTCAAGCTGATATTCTACCTACCGAGCCGCTTGGC 199656 36 100.0 35 .................................... TCCCCCCTGACGAGCTCATCGCCGACGGTAAGCTA 199585 36 100.0 36 .................................... GATTAGGTCGCGCATCCCCAGCGTCCACTCCACTAG 199513 36 100.0 35 .................................... TTCAGATACTGGTATTGACGTTTGATTTGCGCGCC 199442 36 100.0 38 .................................... CCCCATGGGATGGTAGCGGGGTCCCCCCTTACGGGTCA 199368 36 100.0 37 .................................... CCGGTACGATTGGGCCGTCCGATACAGTCATCCCAAT 199295 36 100.0 38 .................................... CACACTGGGCAGGAGCGTTATGCGCCGGCGGTTACGAT 199221 36 100.0 37 .................................... GGAAGAGCGTTTATTGCAGTTTGTGGTGAAGGTGTCC 199148 36 100.0 35 .................................... AAATGACCCGTTTTGAAACGCATCTTCCAGGCGAG 199077 36 100.0 37 .................................... GTCATTGGGACGGCGGTCGGCTTACTGCTCATTTGTG 199004 36 100.0 36 .................................... CGCAGGTTGTCAAGCGTTATTTTTTCTTCGTGAAGT 198932 36 100.0 37 .................................... AGATGCTAGGTTATGTCCGGCGGCGATTGGAATGAAG 198859 36 100.0 36 .................................... CCGGAAGTTTTTTCATCTCATCCGGCAAGCCAGGCA 198787 36 100.0 35 .................................... AATCAGACAGCGCCGCCCCAATTGCTACCCAGCTT 198716 36 100.0 35 .................................... CCACCGCCCTGCTCCCAGCCGTCATCCAAAGCCTG 198645 36 100.0 35 .................................... TGATCGGAGTTTCAACCAGTCGGCGGGGGCTCCGG 198574 36 100.0 37 .................................... GTGGGTGGTCCTGGACGGCGACGACGACGACGTTGGC 198501 36 100.0 36 .................................... GGTCAGCCCCCGCCGCCCTATGGCTACCGCAACGAC 198429 36 100.0 36 .................................... TGGCGTCCACCGGCGCCGGAGGCTGAGCGGGAAAAG 198357 36 100.0 37 .................................... GATTTGTCGGCGGTAAGGGTCTGGGTGAGCTGGGCGC 198284 36 100.0 35 .................................... CCTTGCCGGTATAGAGTTCCTCGAGGCGGAGGATG 198213 36 100.0 37 .................................... CGGTCAGAGCTGGCGCAACAATGGGAAGCCAGCTTTT 198140 36 100.0 37 .................................... CGGGCCGGGTTGGGTCGCCCAGGCGGCTTTGGATTGG 198067 36 100.0 35 .................................... AACCCAGCCGCGCGCAGCCTCTATCAGACAGCCGG 197996 36 100.0 35 .................................... CGTCGCCCACCTCCCAAAACCTCAGATGGCGCTCA 197925 36 100.0 37 .................................... CACGCAGCTCGAAGAACGGGATATTGTTCTCCACGAG 197852 36 100.0 38 .................................... CACCTCATTCACCATCGGTTGGGGTTGCCCGCGGAGAC 197778 36 100.0 36 .................................... TGGCGCGGCAAAACACACCACCTGGTAGTCCGTCGC 197706 36 100.0 36 .................................... CCGGTACGCTGACGACGATTGGCGCAGGCGGGCGCG 197634 36 100.0 36 .................................... AGCAGGACATCCTTGCCCCCAGCCCCGACCTTCAGG 197562 36 100.0 35 .................................... CTTTTTTTCTCATTCATTCTGCTTTGAATATAGCA 197491 36 100.0 36 .................................... GGGACGTCGGCGAAGCGTTTCGCCTGGCGGGCGCCG 197419 36 100.0 35 .................................... TTTCAGTCGAGCCGCTTGAGTTGAAACCCAATCAA 197348 36 100.0 38 .................................... TTTCGGCACTCAAGTCCCAAGCCGGGAAGCGGACCCAG 197274 36 97.2 35 ......T............................. GCTCTGATCTCACCTGAGTGTCCACGCTCATGAAG 197203 36 100.0 36 .................................... GGAAAACAAAATGAGCAGCTACCCGCGGCTGTCTCT 197131 36 100.0 37 .................................... GTGTCGTGGACATTCCCGAAGTGCCCGATGCATGGGT 197058 36 100.0 37 .................................... AAATTCACTACAGGAGGCAAAAAATGACCACACTCAC 196985 36 100.0 37 .................................... CCGGCTGGGCGACCTGGTCGGCGCGTGCGAGGTGTGG 196912 36 100.0 36 .................................... CTCAGCCGCGACGCCCACCGCGCCGTGATTGAACGC 196840 36 100.0 36 .................................... AGCGAATCTCAACGCCCCATCCGCCGCCAGACTGTG 196768 36 100.0 38 .................................... GCGGGCAGACTCACTACCGAGCCGTCCGGCGCGGCCAC 196694 36 100.0 36 .................................... GTGCGCGTGACCAACCCACGCGCCGGTAGGTGACGC 196622 36 100.0 36 .................................... GAGGTTGACGCGGTGTTTGACGCCGCGCGGCAGCAG 196550 36 100.0 37 .................................... TCGCTCTATCCGCTCCACCGCCGTGTACGAGCGCCAG 196477 36 100.0 38 .................................... GCGGGCAGACTCACTACCGAGCCGTCCGGCGCGGCCAC 196403 36 100.0 36 .................................... TGGGAAGAGATAGAGGCGAGGAGTGAGCAGAGAGAG 196331 36 91.7 36 ........A.......G........T.......... TGGGAAGAGATAGAGGCGAGGAGTGAGCAGAGAGAG 196259 36 91.7 36 ........A.......G........T.......... TGGGAAGAGATAGAGGCGAGGAGTGAGCAGAGAGAG 196187 36 91.7 0 ........A.......G........T.......... | T [196161] ========== ====== ====== ====== ==================================== ======================================= ================== 84 36 99.7 36 CTTTTTCCGCTTGAAAAAAAGCGGCCCCATTGAAGC # Left flank : AGGGTTTATGCGTAACCGCTATGTTGTTTGCTATGACATTGCCAATCAAAAGCGATGGCGTCAGGTGTACCGTATTATGCGCGGCTTTGGCGATGCGGTTCAGTATTCGGTTTTTTGCTGTGATCTGTCACCGAGTGAGCGAATGCTGATGATCATGGCTCTGACGGAAGTGATGAATCAGCGTGAAGACCGCGTGATGGTGGTCGATATTGGCCCGGCGGACGGGCGCGGCAAGGCTTGTATTGAGGCGCTGGGCAAGCCACTTGCACCGAACTCGAGCGAGCGGATCACCGTTGTTGTGTAGTGGTTCGGGGTTGGAAGGGGTGCGAGCGGTGGGGTGATGCGTCTTTTGCCGGGAGCCGCTCGCAGGCATGAAGCTTTTATGAATCAGCCTGTTACAAAAACTGGCTTGACGTATCGGACTTGTTTTGGGCATGGTTTTGCAACCGCTCGCAAAACGGTCTGCAGCTACTTGAAAACACGGACGTTGGGCGAACGGA # Right flank : GGTGAGTAGTGTTCAGTCTTCAGTGAGCAGTGTTCTTTTTTCCGCCTGAAAAAAGTGACTTCGCAGTTCCGTTGAGGCATTGCTTGTTAGGTTGATTACAGTTTGTAGTTCTCACCCCATACCTAGCCCTGGACACTAGACAGGAATGCCGGTAACTGAAAGCGCAACACAGATAACTATTCACTGACTACCTCAGGCCAAGTCTCAAACACGCAGGCCCACCCGACGCGAAGGGCAGGGCTTTCCGCTGCTCCCGACAAACCGCTTCGCAAGATAAAGAACCATAGCCTTCAACGACGTTCACCAACTTCGATGACGACGGTGCGAGGCTTCAACAGAGCCGCTTTTTTCAAGCGGAAAAAGTGCTGATTGAGAAAAAAGGGCTGGTTAAGAGTTAGACCCTGCCTTGAGAATTATGACGCTGCCGCCCTACAAGAAAGACCGCCCACTACAAGCGTGGACTGGCATAGGTCATGACCAAGTAGATTAGCGTCTCGGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCGCTTGAAAAAAAGCGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 536554-533824 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072649.1 Chloracidobacterium validum strain BV2-C chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 536553 29 100.0 32 ............................. CCCCCCCCGGTGAACCCGGCGGGATGAGAACC 536492 29 100.0 32 ............................. CCGCGCGCCATCCCCGTCCCGATGCCTTCCTG 536431 29 100.0 33 ............................. GTGTTCAGTTTTCTGCCAATCTCCCACCCGCCC 536369 29 100.0 32 ............................. TTACCAGACGAAGCGACCATTAGGGAGCGTAG 536308 29 100.0 32 ............................. CGACTGCGCGGCGGCGCTTACTGGACGAGCTG 536247 29 100.0 32 ............................. GGTTTCAACATTTTCCTGTGTCGGCAAGGCAG 536186 29 100.0 32 ............................. CGTGTCCAGCGGGCGTGTTTGGCTCGAGTCCG 536125 29 100.0 32 ............................. CTGCGTCATCGTCTCGAGCTGTTGCGCAATCG 536064 29 100.0 32 ............................. ACGAGATACCGCGCGCCACGCCGCCCCCGAAT 536003 29 100.0 32 ............................. CTCATTGCGCCAGTCTCCGCACGCGCAAATTG 535942 29 100.0 32 ............................. CGACTGGCGCTGACTGAGCGCCAGATACAGCG 535881 29 100.0 32 ............................. CGAAACGGGCGCACGCTCACCGTACGCCCACA 535820 29 100.0 32 ............................. CCAGACGAGTTCGCAAAAGTAGGCGCACCAGG 535759 29 100.0 32 ............................. TCGAGGGGCGTGGCGAAATGCGGCTTCCGGCT 535698 29 100.0 32 ............................. GCTTGCTTTGTGTGGGCTTTCTTTGAGTAGCC 535637 29 100.0 32 ............................. AAGCCCGCCGGTTTTGGCGGGCTGCACAGGAG 535576 29 100.0 32 ............................. TGTTTATTGTCTTCGACAGGGATTGCGACAAA 535515 29 96.6 32 ............................T CTAGTTGTGGCGGTTCCTCTTGGAACGCCTGC 535454 29 100.0 32 ............................. CGACTGTCAAGGAGCGTAGTATGGGTAAGGGT 535393 29 100.0 32 ............................. GTGCGTCATGGCTGCCGCCCAGACTCGTCGTG 535332 29 100.0 32 ............................. CGGAATCTGGCGCTGGCCACGAAGGGCACGTT 535271 29 100.0 32 ............................. TCAGTTTGATGCCCTCCGCGACGCCGGTCTGC 535210 29 100.0 32 ............................. CGCTGCCAGCAGGTCGGTTCCGGGTTTTGGCG 535149 29 100.0 32 ............................. CTGCTGGGAATGCCCGATTTTCAGTTGCCGCA 535088 29 100.0 33 ............................. TCGTTGACTTTGAGATAGTTGCGGAAGGAAGCC 535026 29 100.0 32 ............................. CGTCGTGCGGCGCGGAGAGCGAATCGTGGCTC 534965 29 100.0 33 ............................. GTTCGCTTCGTCTGGTAACTTAATATGGTAGGG 534903 29 100.0 31 ............................. GGAATCCCGCGTCTTCCAGCCTCTCGAGAAA 534843 29 100.0 32 ............................. AAAAACGACCTGGTGGGAGGGCCGCCGAACGA 534782 29 100.0 32 ............................. TAGCGCCCGGGGAGTCTCCGCCGCCAAATGTG 534721 29 100.0 32 ............................. GATTCAGCCTCGACCAGATACGGGAGCTAACG 534660 29 100.0 32 ............................. ACGCATCTTCCAGGCTTCCATGCGCCGCATGG 534599 29 100.0 32 ............................. GTGTTTGGCTTGGTATGCCCTTCCTAACTCAA 534538 29 100.0 32 ............................. GTTTTGATTGTATCTGAGGAATTTGAGGTTGG 534477 29 100.0 32 ............................. TAAAACACTCGCCCGCGCTTCGTGAATCTAGG 534416 29 100.0 32 ............................. CTTGCCGCCCTTCAACAGGCACGCGCCGCCGG 534355 29 100.0 32 ............................. ACGGTGAGGAAGCCGCCGACTGAGGCGGAAAC 534294 29 100.0 32 ............................. TCTAACTAGGAGAACAACTTATGGACACACGG 534233 29 100.0 32 ............................. TTCCCTCATTGTCGTTATCTACGGCTACAAAG 534172 29 96.6 32 ............................A ACGCCAAACTGCAAACTTGTGAGTTTGCGAGG 534111 29 100.0 32 ............................. CATATACGGCTATTCGCTCTCCGCGCTCACCA 534050 29 100.0 32 ............................. ACCAATTGCTGCCATGGCTGATGAGCTGTCAA 533989 29 100.0 32 ............................. GCGGCGAGGCCCGGCGCCCTTGCCGGACGATC 533928 29 96.6 47 ...........................T. GAGGAACTGGAGCTGGAGCAAGGTGTAACCTGCGCTACACTAGTTTT 533852 29 79.3 0 .T.........A...AA....G...G... | ========== ====== ====== ====== ============================= =============================================== ================== 45 29 99.3 32 CCGTTCCCCACGCACGTGGGGATGAACCG # Left flank : CGGCCGGTGACATGACACCACCTACGCCAGCACCGGAGTCGGTCGCGCCTGCCATTCCCAACCCGGAGAGCTTTGGAGATGCTGGTCATCGTTGTTGAAAATGCGCCCCCTCGATTACAGGGACGGCTGGCAATTTGGCTTTTGGAAGTACGCGCGGGCGTTTACGTGGGCGATTATTCGGTGCGTGTCCGCGAATATCTTTGGGAGCAAGTCGAAAAAGCCATTGAGGGTGGAAACGCGGTGATGGTTTGGAAGGCGCCGAATGAATCGGGCTACGACTTGCGGACACTTGGTCCGAACCGCCGCATACCGGTTGATTACGACGGCATCAAGCTTGTTCAGTTCCTGCCTCCTCCCAACTCGGACGATACTTCCGTGAGTCCGCCAAAAGAAACCTGATCTTTGACAATCGCATATTGTTTCTAGTGATGTTGGGTCAAAAAATCGGTAGCATTTGTGTGTTGCCACAACCAACGTCTTTACTGTAGGTTCCAAGAAGT # Right flank : TCACTGGCGCGAACATCGGGAGGGAGGGAAGGGCAGTCCCTGGCTGCCAAAGGTCGCCGGGATCGCTCACCTTCCGCAAAGCGCTTCAGTGTATGGTGACTGGTGTTCAGTGACTGGTATCCGGGTGCCAGCACTAGCTGAGATCACGGGTCATTCATCGCTGGCTACTGACCCTGAGTTATTACGGGAGCATCGGTCCAGTGCGTTGGACGGCAGGTTACTGGGTGGCAGCCGGGGACGCCGAAACACGGCAACTGAGTGCCTGACCAGTCTACGCGGAACAGCGCTGCCCGTAACGATGTGTTTCCGGCATTTCGACCTGGTCAACGCCTCTCTGCAGCCAGGCCAAGCAAACGAGGCGTCGCGTGTACGACCTACGGGATACGCCGTGGTGAGCAACTGTGCGGCGTTGGACAATGAAGTGGTTGGGCCAGCGCGGACGCCGGGATGGAGCTGCCACCGGAGACGCTGGGCGAGACACTGGTTTGGCCTTGCACCAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACGCACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 555098-556991 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072649.1 Chloracidobacterium validum strain BV2-C chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 555098 37 100.0 43 ..................................... CGGGGTCGTTGCCACAAGCACTCCGTCTTCGTTGAAGACGCGC 555178 37 100.0 40 ..................................... AGCAAGCAGCGCTTGTTCGAAGTTTTCGTATACCATACTT 555255 37 100.0 39 ..................................... ACTTCAACCGGGCGCTCTAGGATTTTGCTGGCTATATCC 555331 37 100.0 39 ..................................... CACGACTAAAACGAAGTGTTACATGGTCGTTATTTGATT 555407 37 100.0 40 ..................................... GGGAGAGGAAAAAAGTAAAAAAGAATCCGGCAGTGTGAAC 555484 37 100.0 41 ..................................... CTGCACTCAAACGATACGAAGTAGGTGAATTCTTTCTTTTT 555562 37 100.0 40 ..................................... GTCCGTTACCGCTTGACAAGACGGTAACGAAAGTACATCT 555639 37 100.0 41 ..................................... GCGCCCCACTTCGGGACGCAAACGATACGAAATAGGTGAAT 555717 37 100.0 41 ..................................... GACGGTGACGACATCGCACACCGTCCGCCTGATTCGGCGCC 555795 37 100.0 41 ..................................... CTAACGACTGTCCAGGTCGTGACCCGCCAGTTTGTGGTTTT 555873 37 100.0 42 ..................................... CATTGTGCGTTGATACTCAGCCCGGTCGTACGTGCCGGTCTC 555952 37 100.0 36 ..................................... TCGAAATTAGGATCACTAACGACTGTCCAGGTCGTG 556025 37 100.0 40 ..................................... AGCGCCGCGTCGAACGCATTCTGGTCGCGAATCACCGTCC 556102 37 100.0 39 ..................................... TCTCTCTAGCTTCTAACGTTTCCTTAGAAAATAAATCAG 556178 37 100.0 40 ..................................... AGCGCGAATGTGCGATTGCAAACAGTCTTCGGACGTTTGG 556255 37 100.0 41 ..................................... TTTTAACCCCCGGCTTGCGCCCATGGCGCACAAGGTCATTC 556333 37 100.0 41 ..................................... CTTTCCGGCCTTGCTTCGCTTCCGTTACCGCTTGACAAGGC 556411 37 100.0 41 ..................................... CTTTCCGGCCTTGCTTCCGTTACCGCTTGACAAGGCGATAA 556489 37 100.0 41 ..................................... ATCGCGGTTCAGCAGAGCTTCACGAAACTGGTCGAGTGGAC 556567 37 100.0 37 ..................................... GGAAAAGTAGTCAAAACATACCCTTCGTTGTACTGAA 556641 37 100.0 40 ..................................... CATCCCAGAGAGGCGTCACATGAATTACGGACGTGTGATG 556718 37 100.0 42 ..................................... CCGTGTGACGGAACAACCGCCACGAGTATTCCGTTTTCGTCG 556797 37 100.0 42 ..................................... CAGAGAGAAAAGAGAGATTAGGAGTGAGGGATTAGAGATGGA 556876 37 83.8 42 ......C.C...A.T.T..G................. CAGAGAGAAGAGAGAGGTTAGGAGTGAGAGATTAGAGATGGA 556955 37 81.1 0 A....A......A.T....G..........C.....T | ========== ====== ====== ====== ===================================== =========================================== ================== 25 37 98.6 40 CTGCGGATTGAAGACGCGATTTGAAGCGGATTGAAAC # Left flank : TCCAACCTCTCACGTTTGCCCCAAAACGGGACGTGCCCACGGAAAGCACCCTCGCCAACGGGTGACCGGACGGCCTCCAGACCAACCCGCGCAGCTCGATTGCCGGAGACTAGACATGCTGAAGTAGTTACATGACAACATACAATGCAATCTGGAGAACAAAAAGCTATTTTTAGAAAAACCAATGCAGGTCGGCTTGGGACGTGGATGGGTCATAACCGCGTGGAGTTGATGAGCCAGCCAGCTTGCGGTAGGCAGGCGATGATGTGTTACATACCCGCCTACGGGAACAGCCCTACCACGCGCGTCACAGCGCGCAGCGTGGGCTAACCTCATCCAGACCGCGTGACAGGGGGGATTAGCCACATACGGATGACCTTGCGCACAAAAGACTTTGCCCGACACCGACCATTTGCCGACCCGCTTTTGTGGGCTGATTGCTCACCGTTAGCCAAAGCCGGTCACATCTTGATTGACAGCCAACGACTTAGCGGCGCGGC # Right flank : TCAGAGAGAAGAGAGGGGTTAGGAGTGAGAGATTAGAGACGGAATGTGGATTGAAACTCCCAGTGGTGAGAAGTTAGGAGAGAGAAGTGACGAGAGAAAGTGAGAAGAAGGGAAGAAGAAGTGCGGCTTGAAAGCTAAATTACGTTATCAGTCGCTTGTCCATCCCAACCAGGGCGACAACGGAATCAGGCAGCGGGTGGATTGAAACGGCTGAACGTCCCGCCTACCCAGTCCCACCACAGCGCAGGGGCAGTAAGAAAGCCTTCAGATGGAAAGCTCGGCGCGGGGTGGCAGGGACGAATCAACCTTCGCCGTCGTCACCAAGACAACCCACACATCCGTTGTATCAGGCTCGGCGCGGAGTGGCAGGGACGAATCAACCTTCGCCCCTCCACCAAACCCGCTCTACGCTCCGCGCCCGGCAACGGACAGCACGCCGGCACCCCAGCCACCACAAGCTTGCCGTCCCAGCAGACGCTTCCCAACTTCGCTAAGGTCAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCGGATTGAAGACGCGATTTGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 4 680674-685577 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072649.1 Chloracidobacterium validum strain BV2-C chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 680674 36 100.0 35 .................................... TCGTGGCGGCGGCTGACCCGACACTGACTGCCGAG 680745 36 100.0 37 .................................... ACGCACTCTTGACGCACGTGTTATGGCCTTACGCACG 680818 36 100.0 35 .................................... AGCCAATAGAACTTTCGGATGAAAAGGAACCGGCT 680889 36 100.0 35 .................................... GGCGCGCCGCCGGAGACCATTCTGGCCACCCTGCG 680960 36 100.0 36 .................................... CCCAGCCAACTCACGATGGAAAACCAGAATTTCCTC 681032 36 100.0 35 .................................... ACGCCCCAGGAGATCAACGCGCACTGGGAGCGCGT 681103 36 100.0 35 .................................... ACGCAGTGCGTTACAACCACTTCTGACCCAAAACC 681174 36 100.0 37 .................................... GGCAAAGTCGGGCTAGGAGGCGTCCTGCCCATTTCCG 681247 36 100.0 35 .................................... GCGTTGGCGAGCGTTATTGCGCTGCTGAGGTCAGT 681318 36 100.0 38 .................................... GGCAGAGGAGCGTCCGCGGCACTACATCGAGATAGGCG 681392 36 100.0 35 .................................... CGGCGCAGAACGGACGGTGCAGCGCTGCATTGCAC 681463 36 100.0 38 .................................... GCCCGACGCCAGCTATCAGTCCGGCATGCGCGCTGACG 681537 36 100.0 35 .................................... CGAGAATTGCCACGTTACCGTGCGCGTCAATCCCG 681608 36 100.0 37 .................................... GACGGTTGACGTGCAGGACAGATAACATCTCTGGACG 681681 36 100.0 37 .................................... GCGCAAACACGGGCTGACATTCCGTGGTGCTTGGATA 681754 36 100.0 36 .................................... CAGCCATCTGGGGGAGGTGTCGTGCCGTACGAGAAA 681826 36 100.0 35 .................................... AGACTCACGGCAGTCGCAGAGTGAAACGCTAGCGT 681897 36 100.0 35 .................................... CCGACCGCCACGGAGTTAGTCGCGCCGATGGCTAC 681968 36 100.0 35 .................................... GCTATGGCCCGTACGAGTCCCAGTGCCCGCCGTGG 682039 36 100.0 35 .................................... AAGCACAAATGCAAATGGCAAAGAGTGAACGTCTC 682110 36 100.0 36 .................................... CAAAAAGTCCCTGACCAGTCCTCACCGACCCCTACC 682182 36 100.0 35 .................................... GCTCTCCGCGCCGTCACCATTGAACTCGACCTTAT 682253 36 100.0 37 .................................... TCGTCAATCCGGGCACGTACTGCGTTAATTTGCGCCT 682326 36 100.0 36 .................................... AGTGGGAGAGGCACAGCAGACACGTCTGGGCAGCGC 682398 36 100.0 34 .................................... ATTATAGCGCCATCCGTCAACAGGCAACCTAGAA 682468 36 100.0 36 .................................... CACGCATTCCACAACCCACTCAACCAATCCGGGCGA 682540 36 100.0 36 .................................... ACACTTGGCGAGCTGCTAGGCCCATAAAGCCGCCGG 682612 36 100.0 36 .................................... TCTGGAACGGCGAACCAGACTTGGTCATGTCGGCGT 682684 36 100.0 35 .................................... TTTTGAAGTATTTATGGCGCTGCAATTACAAGGGT 682755 36 100.0 36 .................................... CGCCGACGCCGACGGACAGCCCGGCGGTCACAGACG 682827 36 100.0 35 .................................... TACAAACTCAGCCAATTCCCAAACGGACCGTGGGA 682898 36 100.0 36 .................................... GAAGAGCGAGACCAGGCAGGACTCGCACGGCTGTCT 682970 36 100.0 35 .................................... GTGTCGGCGTCCGGCACGTCGCTGCCGGTGGACGG 683041 36 100.0 35 .................................... TCCTCTAGACGGCGCGTGCCGGACGGCAGCGCCAG 683112 36 100.0 35 .................................... TTCGGTGGCGGCTGGGGCTGGGGCTGGCATGGGGA 683183 36 100.0 35 .................................... TGCCACCAATGACGCTCAGGCACGCCAGCGACCAA 683254 36 100.0 35 .................................... AGCCGCCCAGTGACGCGCCGAAACATCACTGTTTG 683325 36 100.0 36 .................................... CCTGCGTGAGTCTCAGCCCCATATCACCCTCGGTAG 683397 36 100.0 35 .................................... AGTTGCGCGTGCGCGTCCAGTAGCTCCTGCGGCAG 683468 36 100.0 36 .................................... CGCCGACGCCGACGGACAAGAACGCGGCGGTCACAG 683540 36 100.0 34 .................................... ACCTGCTTGCTGACGAAACCTATAAAAAACTTAT 683610 36 100.0 35 .................................... CGAATAATTATCAATGAATATGACACGAAATTAGT 683681 36 100.0 37 .................................... CGTCATGTGGACGGCACGCTCTTTCGCGAGCCGACCA 683754 36 100.0 37 .................................... GCACGCTCTGGCGCTCGTACACGGCGGTAGAGCGGAT 683827 36 100.0 34 .................................... GCGACGGCGTTTGTCCCCAGCGCCGTCGCGTTCA 683897 36 100.0 35 .................................... TCTATAAATCCAACCACGTGCCGTTTAGCGGTTCG 683968 36 100.0 38 .................................... GTCTGTTCCACTCCGTCAGAGGCGCACAGCATCAGACA 684042 36 100.0 35 .................................... TAGTGACGCGGGCGATGCCCCTCCCATATCAGCGC 684113 36 100.0 37 .................................... TGGTTTCGCGCGGGCCGTCCACGTGGACGCCTAGCAG 684186 36 100.0 35 .................................... TTGTATCTAAAGATAATAACAATTGCTTTCTTTTT 684257 36 100.0 35 .................................... ATTATTCGGCGTTAGCGAAGACTTATGAGCCGGCG 684328 36 100.0 36 .................................... GCTTAGGTGGACAGTTGAGGCGGATGGAATGGCAGG 684400 36 100.0 35 .................................... GTAAAAGTCAGTAACCTGTGCTGGCCTTCCGCCAG 684471 36 100.0 36 .................................... CGGACGACCAAACTCATCAGCAACCCACGGCCTCAA 684543 36 100.0 35 .................................... TCCTCTATAAGCGACGTTGTGGGAATCGTTCCCAA 684614 36 100.0 36 .................................... ATACGACATCACGAACTTAGCGATATAGTCCAACGG 684686 36 100.0 35 .................................... TGGTCTCGCGCGGGCCGTCCACGTGGACGCCTAGC 684757 36 100.0 36 .................................... GGGTGGAGTCCTGGGGCGACGGTCCATGGGTGGTCG 684829 36 100.0 36 .................................... GGGTGGAGTCCTGGGGCGACGGTCCATGGGTGGTCG 684901 36 100.0 35 .................................... TCTATAAATCCAACCACGTGCCGTTTAGCGGTTCG 684972 36 100.0 36 .................................... CTCCCACCACATTCCGTAGTGGGGGCGGGCGGTCAC 685044 36 100.0 36 .................................... ACGCGCTGGCAGCGCTCCGTCGCCCACGCGCACTGC 685116 36 100.0 35 .................................... CACCGCGTCGGTGTCTCCGTGGCGACCAACGGCAC 685187 36 100.0 35 .................................... AAACAGGCAGGGCTTTCTGAGTTGAAAGTGGATTT 685258 36 97.2 35 ..........................T......... GTTCAGCGTCCGGCACGTCGCTGGTGTTGGACGGC 685329 35 97.2 35 .........-.......................... TCAATCAACTTGCTCGTTACGCAACACGTATGGCG 685399 36 100.0 38 .................................... CCTCGCTCAAAGAGGCGTATGGGCGCGTCACGGCGGAA 685473 35 94.4 35 ..................-.............A... ACCAAGTGTAACGGAGGTCATACCTTGATTCAATC 685543 35 88.9 0 ..A........................AC....-.. | ========== ====== ====== ====== ==================================== ====================================== ================== 69 36 99.7 36 GCGAATTAATCTTTGATGCCGTAAGGCGTTGAGCAC # Left flank : TTACGATGTGCGTAATCCAAAACGCTGGCGACGAGTCTATGAGCGCGTACGTGGCAGTGCGGAACGGGTGCAGTATTCTGTCTTTCGGATGTATGCCACCCGAACCGAACTCGAAGCGTTTCGCTGCGACTTGGTTCGGCTCATGGATGATGAGGATGACTTGCTCATCGTTCACTTGTGTACGGGATGCGCGCGGCGTGTCGTGGATACGTCAAGACAACAGAATTGGAACGAGGAGCGACGGCAGGTTGAAATTCTGTGATCAAGCATCACATCGTGGACTTGCGGCGAGCCGCCAACAGCCATATCAACGCTTCTCTATCCAACGATTTACCACCAAACAGACGGGTTTGTCCCGCTTGATGGGGCTGAATATGTTGAGAATCAAAGCTTTAGCGTCTTGCAACGACCAGTTTGGCGCATCTTCGGCAACGTGCTCGGCGAGGTGCTTGAAAGCTTACCGTCTAGGTGGTTGAATAGCAGTCGGTTAGAGTGTAACT # Right flank : CTTTAGCAACGATTTACAGCGCATTGACCTACCGGCATCAGCGCCGCGCTGGTGCGCAGCTCAACCACAGATACAGCATCTCTAAGGGTTGTGCATCGAGCTACTCGATGACGCGGATATTGGGTACTCGGCGAAGCGGCTCCGACACTACGTTGGTGACTGGCAGAATCACTCAAACCTCGCCGCCCGCGCCGGGGCTTTGTCGCGCACCTTCTGCAGGAAAGTGAAACCTACTTCGGTTAAGCCGACTTTGCGGCCAGCGGCAGCAAGCGTCGAACAGGCTTCACAAGGTTCTGTGGGCGCACGGCTGCCTCCGGAATGGCGCACGTCTCGGCTTCAATGTTGTGGCTAGGCCAGGCTGCACACACGCGAATAGCACGGTGTATTTCATCAGGCATGTTTTGGATGGTAATAGCTGGCTGGTAATAGAAGGTATCTTTCATCACCTCGATATGCAGCATCGCTTGCACTTTTCATGAGGAAGTTCATTTCGTCTTGGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGAATTAATCTTTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //