Array 1 130352-131644 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDUI01000011.1 Chromobacterium sp. LK1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 130352 28 100.0 32 ............................ TATCCGGCATTTGGCCGTCTCGCGGGCAAGAA 130412 28 100.0 33 ............................ CTGAGGCAATGTATATTATGTCAAATCGCAGAA 130473 28 100.0 32 ............................ TAAAGCGTCGCTGACGCTCAGCGTTTGTTAAT 130533 28 100.0 32 ............................ CCGAAGAACAGCGCCAGCACCCCGATACCAGC 130593 28 100.0 32 ............................ TCAGTGCCCGTCGCCACCACTTTGCCGTCCTT 130653 28 100.0 33 ............................ CAGATGGGCACCCTTCTTTTGTCGGGTCCATCG 130714 28 100.0 33 ............................ CTAGAATTTCTGGCCAAGCTGATAGCCGTGGAT 130775 28 100.0 32 ............................ AAGAAGGAAAATCAAACCGCGGCCAACAGTTT 130835 28 100.0 32 ............................ CAAATCGGGAAAGGCGGGAGAATGCCGTCATT 130895 28 100.0 32 ............................ TGGGCAGGGACGAACGCAGGTCAATGCCGCGC 130955 28 100.0 32 ............................ TCTTCCGTTGACGATGAAGAGGCTGCATACAA 131015 28 100.0 32 ............................ CGAGCGCATGGTGGTGTGCGCCGACTTCCTCA 131075 28 100.0 32 ............................ TGTTCAACCTGGACTTTGAACAGACGATTGCG 131135 28 100.0 32 ............................ TGTCCTTTTGTACAGGTTAATAAAACGCAACA 131195 28 100.0 32 ............................ TTGGCCAGCTGCTTGCATGGCTACACAGTTGC 131255 28 100.0 32 ............................ TTGTCTACCGGCTTGAGCAAGACAACGTGGGA 131315 28 100.0 32 ............................ AAAGACAGCCTGAATTAACAGAAAGGCATTCA 131375 28 100.0 33 ............................ TCTACAACCCCCGGCATGCTGTATTCATCCGGG 131436 28 100.0 32 ............................ GCCAGCCTCGATACACTCACGAACGAAATCAC 131496 28 100.0 32 ............................ AGTCGACAATGACTTGCAGCCAGTTGTTCGTC 131556 28 100.0 33 ............................ CAGAAAGCACCCAGAAAAGCGATAAGGACAAAA 131617 28 89.3 0 .....................AA.C... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.5 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CTCCAGCTCATTAGCGCTGAACAAGGGCGTGCCGCCCCCGCCGCAAAACCCCACCATCACCCCAGCCTTGGCCAGCTCCCGCATCGCAGCCTGCGTCACCGAGGTGCCAGTGCCCAGCAGGATGCAACTAGTGTTGGCGATGGGGATATTCCAATACAGCGAAGCCTTGCCAGCGTCGGTGACGTATTCCACCCGCCCGCCATTGACCAGCACCCGGCAGTGCTGCAGATAGTAAAGATTGGCGCGCTTGGAATGCAGAATGGTCTTGAGATCGGACGGGGAAAAATCGGACATGGCGATACCTTCGGGATGGAACGCGACAGCGCATCTTGCCATGAGCATGAATAATGGGACAGCCGGCGCGGACTACCCTTTTTTTCTGCCCCCTGGAGCCAACATTTAAAAACAATGACTTAGCGATAAGCTGAAAATTTGGGTCAAAGCCGAAAGAATCGCTGCAAATGCCCACGCCATAAGGACTGTGGGCGGTGTAGACTCTA # Right flank : AACGCCCCTGATGGGGCATTTTTCTTGATCAGCCGCCTGAACAAAGCCACTCCCAAAGGATAAAATATGCCAATAAAATCACCAAAGGAGTGGCCGTGGAATACATTGACTACGTCAATCAGGCATCCAAGCTGATCTCGCCCCTCACCGCCATCTTCCTGGGCGCGCTGCCGGTATTGGCCATTCTGTTCGTGGTGCTGCGCACTCAGTCCTACCACATTCCCTTGACGCTGCTATGGCGCATTGTGGGCGGCAAGAAGGAGATCAACGACAAACTGCTGGCGGACTTTCTGGATGAAAGAAACGCCATCATGAAGTTCCGTACCCTGACCGGGCTTAAGATCCGCACCAAGCAAGAGATGCTGGCGCTGATCCAATGGGCGGCCAAGCACAATGAGGATATTGATGACGTCAAACGCTGCGGGCATTACTTCAAGCTCAGCGAGCCCGGCAATATCACCTCGCCCAACAGACTCGGCAGCATAGCCCTACTGCTAGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 142136-143063 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDUI01000011.1 Chromobacterium sp. LK1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 142136 28 100.0 32 ............................ ATCAGTCGTTCAATCAACGTCGCCTGTTGTGT 142196 28 100.0 32 ............................ ACGCTCGGGAAAGTCTTACGAATCGACTGTTT 142256 28 100.0 32 ............................ GTGGCGCGCATATCGCCGGCGGAGGCCGCCGA 142316 28 100.0 32 ............................ CTGGGACAGGTCGTGCAAGAACCGGATGGTGT 142376 28 100.0 32 ............................ GTTCGTGACCATTTCCAGCGTGCACTTGGCAA 142436 28 100.0 32 ............................ TGCCAGACTTCACTGGTCTAGCCTGCGGTGAC 142496 28 100.0 32 ............................ AAAAAGTTCCCCGTCACGCCGTCCTGCAGCAC 142556 28 100.0 32 ............................ GCGCGTGACCATCGACATCAGCCCCAGCGCGT 142616 28 100.0 32 ............................ TATGGGATAGGCCACCATCAGTTTCGTGTCGT 142676 28 100.0 32 ............................ AAGATAAGCACTGCATACCGGCATAGAGATAA 142736 28 92.9 32 ..............A...T......... TTCCATGCTGGTGGGCGAGATGAATCCCTCGC 142796 28 96.4 32 ..............A............. TGCTTGGCGTTGATGTCGGCGAACATCTGCTG 142856 28 96.4 32 ..............A............. AACCCGACGAACCGATGCGAGTTTGGAATCAC 142916 28 96.4 32 ..............A............. ATGCCGCGGAGGATGCGGTATTGATTGGGGCT 142976 28 96.4 32 ..............A............. TCCTGCCATCTGGTATTGCGTAGAGTGCAACA 143036 28 89.3 0 ....A.......G.A............. | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.0 32 GTTCTCTGCCGGATGGGCAGCTTAGAAA # Left flank : CACGCCGCCTTGCAGCGGCTGATGGCCGGCGACTGGCTCAGCGGCATGCGCGACCACATCGCGCTGGCCGCCATCCAGCCGGTGCCGCCGCAGGCGGAAGCCTGGCAGGTACGGCGCAAGCAGGCCAAGACCAATCCGGACAAGGAACGCCGCCGGCTGGTGCGGCGGCTGGGCATCAGCGCGGAAGAGGCCGCGCAGCGTTTCCCGGACAGCGCCGCCCGCCGCCTGACCCTGCCCTTCCTCACCCTCAACAGCGCCAGCACCGGCCAGCGTTACCAGCTGCACATCGAGCAGCGCCCAGCCCCGGCCACCCACAGCGGCCGCTTCAACGCCTTCGGCCTCAGCCCCGACGCCACCGTGCCGTGGTTCTAACCCTTTTTTTGCTCCCCGCCGCCAGGCCTGTTAAATCAAGGGCTTGGCGCGGGGATAAATAAAAGGGTTTTTATTGGGGAAAGCGATGCTTCCCCCCGCTGGCGCGGGTTTGCGGGGGAAAGGCTCTA # Right flank : TTGCTGAAGAACGTCGAAGCGGATCTGGACGCGCTCACTGCCGGGTAGGCAGCTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTGCCGGATGGGCAGCTTAGAAA # Alternate repeat : GTTCTCTGCCGGATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCTGCCGGATGGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //