Array 1 1910365-1910997 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOY010000001.1 Bartonella sp. M0177 NODE_1_length_2484016_cov_230.182052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1910365 36 88.9 31 ACA..C.............................. TTGAATGGGATCGAACTATTACGGACAAGCT 1910432 36 100.0 30 .................................... CGAAGCCGTGTTTGACATCTGTGATCGACA 1910498 36 100.0 30 .................................... GACGCAATTTTTACACCAGATAGTTTGCGA 1910564 36 100.0 30 .................................... ATTGTCAAGAAATTAATTAATTAATTTTGG 1910630 36 100.0 30 .................................... AATTGGCGCAGCGATTGAGGCAACACGCCT 1910696 36 100.0 30 .................................... TTGAAGCAACTAGCGGAGGCGGCATAATGT 1910762 36 97.2 31 ................G................... AAAATTACTGGCTCAAAACGGTGAGTTGCCG 1910829 36 100.0 31 .................................... TCCTATCGGTGTAAAAGTGTCGATTTTGGAA 1910896 36 100.0 30 .................................... AGCGGATGCTTGGGCGACGCGGAAGTTTTG 1910962 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 98.6 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GCTCGGCATGAAGTTCGGTGCAAAAGAAGTTTATGCCCGTTTCGGCTTTCGGAAGGTGTTGATGGCGGGTTCTATCGTCTCGGCAATGTTTACCGCTTCCAATGGCCTGTTTTACCCCACCACCCCCTATTTGCTGATGATTATCGTGCTCTTGTTCGGCGGCTTTTTGCGCTCGCTTTTCTTCTCCGGTGTCAATGCGCTTGCCTTTTCGGACATTGCCAAGGAAGACATTAGTCAGGCAACGCCGATTGCCGCTGTTGCCCAACAGGCTTCAATGGCGCTCGGCATTGCAATTGCTGGCGCGGTTCTGGAAATTGCAAGCTCCTTTCACAACAATATATTGAAACTTGAAGATTTTCATACGGGCTTTTTCGTTGTCGGCTTCATCTCGGCACTTGCTTTCTTCATCTTCCGCACATTGCCCCGCGATGCGGGACATGCTTTGAACGAAAAGAGCAAACAATCCACGGCACAACACTGATGAAACCAAAACATATTCT # Right flank : CCGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAAATTTCAATTTTTTTGACGTATCTTCCACGTTTTCTCTAAAAATCTAACAATATTTTCACATAAGCTCACGATCAATTTGCTTGACCCACCCTTGAAAAAATATCGAACTTTCATCGTTTGGGCAACGTAGAAGTGGGCTTACCAATACAGGATCAGCCGGCATGGTCGGGCTTGTTTTTACAAAGACCTCAAGCAATTTTGCCCCCCACGGTTTTCGATTTTTTAGGAAAGCTTTCCGTTGTTAAAATGCTGGTGAATGCGCCGTGCTATCTAACAAGCAGCCCGCTTTGATAAAGCAGACTTTAAGACAGCATGATAAACCTTAAGACAGCGAGTTAAACCGGTTTGTCACATCCGGTTTGCTTTTGTCAATTTTTAAGCGTGGCTAAAATGAAAAAGCCTGCCCCACT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 2 1913788-1914417 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOY010000001.1 Bartonella sp. M0177 NODE_1_length_2484016_cov_230.182052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1913788 35 91.7 30 .C...-..........T................... TGATTTTGCAATCAAAGCAATGGCAGCGGA 1913853 36 97.2 30 .....A.............................. AGAATAATAAAAATACGTCGTAAAGCTTTT 1913919 36 97.2 30 ...................................T TGCCCGCCTCTCTCACTTCACACGCTTAAA 1913985 36 100.0 30 .................................... CCGCCGGAGTAGTTGTGTTGGCGGTTGCGT 1914051 36 100.0 30 .................................... CAGACAAAGCGGAGGCAGCAGAATGACTAA 1914117 36 100.0 30 .................................... ACGGTCGAAAAGCCGCGTTGCCGTGCCTTT 1914183 36 97.2 31 .....................T.............. TTATGGAATGCCATTGATGCCCCTGCCTTTA 1914250 36 100.0 30 .................................... CTTTGGTGATGCCAGTGTGGCTCGTTCATT 1914316 36 100.0 30 .................................... CACCTCGTCAGGCCGTCCAACATTTAACCG 1914382 36 91.7 0 .................................GTG | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 97.5 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : CAAATGTAGACACACTACGCCTTTGGCCGATTTATGCAGAAGTTTTCTTCACTTGTCAATCGACCAGCTTTAAAAAACCGGAAAGCTTTTCATGAATTAACCGGCAATCATGGCAAAAACCGGATGCATTTGACAACAAACAATTTTTAGTCGGGCAAACAGCAATGAACCGGAAAAACTCTGTTGCTTTTTAAAAATGCGCCCGTGGCCCCGCGCAAAAATGAACAAAACCGATTTGAAATGGTGAACGGAATTTTCCAAAAATTAAAAAAAGGGGCTTGTGTCAAAGCCAATTGCCAGCTATTTAGCCGCTAACGCGCTCGGATATTTGTTTAACAAATAAAGTTCGCCTTTTATGGAGAGGTGGCTGAGTGGTTGAAAGCACCGCACTCGAAATGCGGCATAGGGGCAACTCTATCGGGGGTTCAAATCCCTCCCTCTCCGCCATGATTTTCCTTTTCTTTGAAACGACTTCTTTAGTTACGCGCCCGCTTGGAATG # Right flank : GAAACGTCATAGTTATTTTAGAATCTTATATTGAGAGCGGGAATTCGTGCCAAAAACGATGCGATTGTGCTAATCAATGGCTACTCAACGATATGATATCTGAACAATACATAATGACCTAATAGGGATAAGTATATCCTATCCTATAGGTTCAGAGACCCACTTGAATTTTTTGTGAATGAAGGGGATTGAATTGGCTATTGTGTGAATTTCCAGTTATTACAAGCGAAACTAAATTTAATTGAGATTATATTATGAAAATATTTCTAACGTCGCTTCTAATCGCAATCACTTTTATACTGAACATAACATCGACTTTCGCCGGAACTATAGCCGATGATGACGAACTGAAAGTCGCGATTAGAAGTTTTTCCAGAGAACTGGGATTGGCGAATGCTCAGGCCTCAAACTGCTCTGACGAAAAAGGCGTCTCACGTGTTGAAACCCTGAGAACTAGAGGTATTAAACGTTTTATAGAAGCCGGTTTTCCACAAACATCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //