Array 1 241-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMQF01000014.1 Deinococcus sp. RL contig014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 240 29 96.6 33 ............................A GGCCGGGCCGCTACCTACCCACTGCCCCACCCC 178 29 100.0 32 ............................. CCGGGCGCAGTCGCGCCACAGCTCCACCCAAC 117 29 100.0 32 ............................. AGTTGAGTGATCTGTTCCATGCGTTTCCCCCT 56 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 4 29 99.2 33 GTGTTCCCCACGGGCGTGGGGATGGTCCG # Left flank : ACCTCCTGCACCTGCTGGGCGGCGACGACCCCGACCCGGACGCCACCGCCCCCGGCGACCTGTGGGACCCGGAGGGCCACGCGGTGGGCGGGGTGAACCATGCTGGTCATGACTCTTGAGGCTGTCCCCGAAAGCCTGCGCGGGGAGCTGTCGCGCTGGCTGATAGAAGTCCAGCCCGGCGTGTACGTGGGCAACGCCTCAGCCCTGGTACGCGACCTGCTGTGGGAAAAGGCCGTGGGCCACACCCGCCGGGGCCGCTGCACCCAGGTCTACCGGGCGAACAACGAACAGGGCTTCATCATCCGCACCCACGGAGACCCCACACGGCGGGTGGTTAGCCTCGACGGCTACCAGCTCGTGGCCGTCCGCAATGCCCGCCATGCCGAACTGGCCCAGGAGTACGACCCTCCAGAGGACGATGACCGATTGTGATTTGAATCCGGGTGGGCGAAGGGGCCTTCCACGGGGGTGGGTGGCGCAGAAGCCCGCGCTTCCGAAGT # Right flank : GACGGCTGCAACTGTCAAACCCACGCGT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [18.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9668-7758 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMQF01000016.1 Deinococcus sp. RL contig016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 9667 37 100.0 33 ..................................... TCCATGTTTCCGTACCCCCATTCCACGAACTGT 9597 37 100.0 36 ..................................... ACCCGCCAGCACTTGCATCACAGCGGAATACGCCAG 9524 37 100.0 34 ..................................... CCTCGATCACCTACCGAAAGACCAGGACACGCGC 9453 37 100.0 37 ..................................... GCAGCGCCCCGCACCATGCCCGGCTGCCAAGCCGGGG 9379 37 100.0 37 ..................................... CGCAGGTCCCACCACCGCTCATTCCACCGGGCAAGCT 9305 37 100.0 34 ..................................... GAAGTGCGCCAGGATGCGGCCCCACTGCAACTCG 9234 37 100.0 40 ..................................... CCATAGGCCGCGCTATAGCGTTCGCGTGCCGGAGCGGGCC 9157 37 100.0 35 ..................................... GTCGATGCCGCGGCGATTGCCGCGGCACACATCAC 9085 37 100.0 34 ..................................... CTTTGCAGCGCGGGCTAGTGCGTCGGGCGTCCAC 9014 37 100.0 36 ..................................... CAGCCCCAGCCAGTCCCGCGCTTCCGCTTCCACGTC 8941 37 100.0 33 ..................................... CCCAAGTCGGGGAACAACCGGGTCACGTATGGC 8871 37 100.0 34 ..................................... CCTCGATCACCTACCGAAAGACCAGGACACGCGC 8800 37 100.0 34 ..................................... ATCTGGAACATCACGCGCGGGATAGATGCGGGCG 8729 37 100.0 36 ..................................... ATTACAGGGGGCCATATCAGGGCGGGGCGGAGGTCG 8656 37 100.0 35 ..................................... ACGCTCACCGGGCCTGGCACACCGACACACCCGCG 8584 37 100.0 34 ..................................... TACGATTTGAAGGCCCGCGTCCCCGTCTTTCCGT 8513 37 100.0 35 ..................................... GACGGTCACGCCGTCATGCTGGCCGTCTTTGTTGG 8441 37 100.0 34 ..................................... TCCCGATGGCGGCAATGCCCTCCAGCAGGTCGCA 8370 37 100.0 35 ..................................... GTACCCCCGCGCCCAGCACCATGTGCCAGGGGCCT 8298 37 100.0 35 ..................................... GCGGATGAGGGCGACGAGTTCAACCCTGAGCCGCT 8226 37 100.0 37 ..................................... TTGGCGGTCTCCTCATCTGGCAGGGGCGCTGCCTCAG 8152 37 100.0 34 ..................................... ACGGCTTGATGGGTCGGGGAGTCGGGCCGTATAC 8081 37 100.0 35 ..................................... TTCAGTGCCTTCTCGGTTTCTTCCGGCGTCAACGT 8009 37 100.0 34 ..................................... GACCGGGCCGCCTACACGGCGATTTGCGAGTCGC 7938 37 97.3 35 ...................G................. AGGGGCGTGTAGAACTCATCGATGCTTTCTCCAAT 7866 37 97.3 34 ...................G................. CACCGTGTCCAGCGTGACGTTGGGATTGACGTAG 7795 37 75.7 0 .....................AC..C...C.AACCG. | T [7762] ========== ====== ====== ====== ===================================== ======================================== ================== 27 37 98.9 35 GTTGCAGCCGTCTTTCGGGACGGCTGAGGATTGAAAC # Left flank : CACGCCCTGGGCCGGGCCATCACCGCCTTTATCGGCGTGCAAGACAGCGGTCGCAACGACCCCGCCCTCGTTCGCTGGGCCAAGAAGCATGACAGCGTCTTGGAATGCCACTCGGTCACGGGCCACAACTCCTGCATCCTCAAGGTCGCCGTGCCGGACGTCGCCGCCCTCGAAGCTCTGCTGAGCGAACTTATCGCCCTGGGCTTTACCTGTGACACCTCCATCGTCCTGAGTACCCCCCTAGAGGGCAAAGTGCTCCTGCCCTCCGCCTAGCGCTTAGGCTCAGCGCCCCCGCCCGGACCCCTCCCCTGACACCCTGTCAGCGCGAACCCCCCGTGACCATCAAAACCTGGGGGGGTTCGCGCAAAGCCGAAAGTGCCTCCCCATCGGCATTTTTCGGAACACCCCCACCGAGCACGGGTCCAAAACTGGACAGCGCAGGGGGGGTTCGCGCAAACTGGTTCCGGGAAGCCGTCCTGGACGCATCCGGGAGGTAACCC # Right flank : TGACTGCGGATGGCCAACCCCTAACTGCCCCACTCCCACCCCCGCCCCCAAAGGCGGCGGTTTTCGTTTCCCCCGCCGCTGCCGTCTCCATGCTATTTTTTCCGTCATGCGCGTACTTCACACCGCAGATTTCCATGCCGGGCGGAATCTGAGGGGCTTTGACCGGACGCCGGAGATTCACGAGGCGCTGACCGAGATTGCGGGGCTGGCCCGCACAGAGGGGGCGGACGCGGTGCTGGTGTCGGGGGACCTGTTTGATACGGTGAACCCGTCGGCAGAGGCAGAAGCGGCGGTGTTTGACTTTTTTCTGCGGCTGCGGGACGCGAATATTCCGGCGGTCGCGATTGCGGGCAACCACGACAGCGCGGCGCGGCTCCACAGCGTGGCGGGGCTGCTGGGGTGGGTGGGGGTGCAGGTGGTGGCCCAGCCCAGCGGCCAACTGACGGACCTGGTGCGGACGATCGAAACCCGGCGGGGCGAGCGGCTGACGGTGGCGGCGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCGTCTTTCGGGACGGCTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.50,-12.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 1 166366-166908 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMQF01000018.1 Deinococcus sp. RL contig018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 166366 37 100.0 34 ..................................... GTAGTACCAGTACCCGGTCACGGGCTCGGGCTGC 166437 37 100.0 35 ..................................... CACGGCGGCCTCAGAGGCGCATTCGTAGTCGAACA 166509 37 100.0 35 ..................................... ATCCCCGCTGAGACGGACCTGCACAAGGTGACGGG 166581 37 100.0 33 ..................................... GCCCTGGACATTTTCTTCGCAGGATTCACACCA 166651 37 100.0 33 ..................................... GCCGGACCGAGATATCCGAACGTAGGTGTCCCC 166721 37 100.0 35 ..................................... GAAATGGTCCTCGTAGAACTTTTCTGGGTGTGCCA 166793 37 100.0 35 ..................................... GCCCGCCTCACGCATCTTCTCGCGGCGAGCTTCAC 166865 37 91.9 0 .......................A...........GG | AT,CT,C,GC [166891,166895,166899,166901] ========== ====== ====== ====== ===================================== =================================== ================== 8 37 99.0 34 GTCGCAGCCGTCTTTCGGGACGGCTGAGGATTGAAAC # Left flank : TCGGTGAGGTCGGCGGGCTGGGCTTCGAGCACCATGTTCAGCACCCGGTATTGGTGGCCGTACTCGCGGTGTTCTTCCATCAGCACCTCGGCGCTGAAGGCGTCCCCGGCATCTAGGGGAGGCATCACCCCAATCACGGTCGCGTCGGGGTCCTCGCCCTCCGCGTTGCGCAGGACCGCCGTCAGCACCGTAAAGCCCGTTTCCGCACGAAAGCGCACCCGCCCCACACGGCCTGTCACGCGAAAAGATTGGGTTGGCAGGCCAGCGCTCACGCCCGCCAGAATAGCGCCCCCATCCGGACACCTCCCCTGACACCCCGTCAGCGCGAACCCCCCGTGACCATAAAAACCTGGGGGGGTTCGCGCAAAGCTGGAAGTGCCTCCCCATCGCTGTTTTTCGGAACACCCCCACCGAGAACGGGTCCAAAACTGGACAGCGCGGGGGAGGTTCGCGCAAACTGGTTCCGGGAAGCCGTCCTGGACGCATCCGGGAGGTGACCC # Right flank : GCTAATCGCCAACCGCTGACCACTGCCAGCTTCCTTACCCCGACCAGAAGCGGTACACCGTTCGCGAGCGGAAGTGTTCGCCGGGGCGCAGGACTGTGGAGGGAAAGGCAGGCTGGTTGGGCGAGTCGGGGAAGTGCTGGGTTTCCAGGCAAACGGCCCAGCGGTGGCCGTAGCGCTGGCCCCCCTTGCCAACCAGCGAACCGTCTAAAAAGTTGCCGCTGTAGACCTGAAGGCCGGGCTGGTCGGTGAAGACGGCGAGCCACCGACCGCTGCCGGGGTCAGACAGGAGGGCGGCTGGAGCGCTGCCGTCACGCAGAATGAAGTTGTGGTCGTAGCCGCCTGCAAAGCGCAGTTGCTCGTCAGGGGTGTCTATCCGTGCGCCGATGGGGTGGGCCTCGCGGAAATCGAAGGGGGTGCCCGCGACGGCACGGCGCTCGCCCGTGGGGAGGAGGGTCTCGCCCACCGGGGTGAACTCGTCGGCGGCCAGGGTCAGCTCGTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCCGTCTTTCGGGACGGCTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 1 9901-12273 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMQF01000030.1 Deinococcus sp. RL contig030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 9901 37 100.0 35 ..................................... AGGCCCCCACGCCTGACAACGTGACCGTGTTCCAG 9973 37 100.0 38 ..................................... GGCATCAGATGCTGCGCGAACCCGCCATGCTGGACCTG 10048 37 100.0 35 ..................................... CTGACCGCCCGCCTGACCGTGCAGGGTGCGCCTGC 10120 37 100.0 36 ..................................... CTCATGGCGAGTTCCTGACCCCCGGCGGCGGGGTGG 10193 37 100.0 34 ..................................... ACTGGCCGGTCAGGTGGCCGAGGTGCGGGTAAAG 10264 37 100.0 37 ..................................... TCTCGCCAAGGAGACAACCATGACGAGTTCTGACCAG 10338 37 100.0 36 ..................................... AGGAGAGTGACGGCCTCGCGCAGGACTGGCGCGGCG 10411 37 100.0 35 ..................................... GACCCCGCGCCCATTGTCCTTCAGGGCACCGTGAT 10483 37 100.0 39 ..................................... CGCATTCTGCTACCATTTACCCATGCCCACCTTCCCGCT 10559 37 100.0 35 ..................................... ATCGTGGCGGCGGGTGCCACTGTCATAGACGTGAA 10631 37 100.0 35 ..................................... ATCGTGGCGGCGGGKGCCACTGTCATAGACGTGAA 10703 37 100.0 44 ..................................... TTCTGGGTGGACGTGCAGGGGTCGCTGGTGCGGATGCCGCTCAA 10784 37 100.0 37 ..................................... TCCCAGACCGTGCCATCCCCCCAGCGCTCCCCGTCCG 10858 37 100.0 33 ..................................... CCGAGAAGTCGGAGCAGGCGTCGTCCTCGTTGA 10928 37 100.0 34 ..................................... CTGGCCGTGCTGCGGGTATCTGGGGTAGGCCGCC 10999 37 100.0 36 ..................................... GGATGCGCGACCACACCGCGCTGGACACGCTGACGG 11072 37 100.0 36 ..................................... CGCTACACCAGAGTTTTTCCAGCGTGACAGCTACCG 11145 37 100.0 36 ..................................... AGAGGAGGTACTGAACCATGTCCATCCCCTCCTGTA 11218 37 100.0 36 ..................................... AACTACCTGACGCGCCGGGTGGGGTGGACTGTGGAC 11291 37 100.0 35 ..................................... GCAAGTTGGAGCGAGCGGAGGAAGCATGACCGACT 11363 37 100.0 36 ..................................... GTGTAGGGGTTGCCTTTCAGCGCCGGGTCATCGTTG 11436 37 100.0 37 ..................................... ACCTGCGCGAGCCGGGTCAGGCTGCCCGCGTAGCCCA 11510 37 100.0 36 ..................................... TGGACGGCTCAGTCCGTTGGACGCGGGTGGAGGGCG 11583 37 100.0 36 ..................................... TCCTCGCTCGCATGGACGCTCTCGTCGCTGCCGGAC 11656 37 100.0 36 ..................................... AGGCGCTCAGCCTCAGCCCGCAGGACGCCGTAGACC 11729 37 100.0 37 ..................................... CGGCGGTTGCCGGGGGCGCTGTCCCTGGCCGATGTCG 11803 37 100.0 36 ..................................... GTCGAAGAACTCCACGCCCTCCGCGACGGTGCCCGC 11876 37 100.0 35 ..................................... CTGCCACCCGCCGAGTACCGCGTCGAGGCTGGGCA 11948 37 100.0 35 ..................................... CCGGCGAGAGCGGCCATTGGGTGACCGTCAGGCCG 12020 37 100.0 36 ..................................... TCGCCAACGCGAAAGTGACGGCGGCGGGCACCGAGC 12093 37 100.0 36 ..................................... ATTGCTCTTCGCATGCCGATTGGGCTTGTTACGCGG 12166 37 100.0 34 ..................................... GGCCATAGGGGCAAGCCTGTGAGCACAATGGAAG 12237 37 89.2 0 .................................GGTA | ========== ====== ====== ====== ===================================== ============================================ ================== 33 37 99.7 36 GCTTCACCGACTTCCCCAAGCGATAGGGGACTGAAAC # Left flank : CCCTGCTGGTCGAGGCCGAGCTGAACCTCACCTGCCCGCACGGATACTGGCACAGCAGCCGTACCCGCCAGACACATACCATCCCCTTCGACACACGCCTGAGGAACCGAACGCGAGCGGCCATCGCTACCGTGCGTGGCTTCATTCAGGCTGAGCAGTGCCCCCCGCCCACAGCGCAACCCGTCAAATGCCTAGAATGCGAGTTGCGGAACTTCTGCGGGGATACCCTGTGACGTCGCAAAAGGCTGTCCTGCTTCCAAAGGTCGCCGATTTGCGAGACGTGCAGGACGCGGCTTCTGAAGATTGCCGCATTGCAGACGACTCGCCTGGGTTGCCCCCTGTGGACAAAAGCGCTGGCTGCGCGTCGCAGAGAGTGGGGGCTACGGTTGGGGTTATCAATCTGCGGGGCGGCCCAATGGGCTATGCTAAACGCCGTTGCTGCCGAGCAACGGGCTTCCTGACAACTGACATCTCCTTTTCCAAGCTGCGTAAAATAAGCC # Right flank : AGTGGCTGCCAAGACGTGATGTACTGGGAAGGTGCCTGAGTGCCCTGCCTGTCAAAGCGTTCAAACGGTGAAGAATGGGAAAGCCAAAAATGGCACCCAAACATACTTATGCAAGGTGTGTGGTCGCCGCTTTCACCCGGAGGCTAAACCAGTGGCCCACAGTGAAGCGACCAAGGAGCAGATTCTCCAGGCGGTTCATGAGCGAATGAGCCTCAGAGGTGTGCAGCGCGTGTTTGGCGTTCACCGCAACACCGTCATCCGGTGGATAAAAAGGGGGCCTCCGAAGTGAGGCAGACCGGTACGGTCTGCCTCACACCTCCCGAAGAAGTGGTGGTTGAGCTGGATGAATTGTGGACCTTCGTGGGCAAGAAAAAGCAGGCGAGGTGGCTCTGGATTGCCCTGGAGCGCAGCACCCGAAAGGTGCTGGCTTGGGTTCTGGGTGACCGGAGTGAGCAAACCGCGTTCAAGCTCTGGGACCGCTTGCCGCTGTCCCCAGAACA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCACCGACTTCCCCAAGCGATAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 68287-66490 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMQF01000025.1 Deinococcus sp. RL contig025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 68286 29 100.0 32 ............................. CCGCCCTGGAAGCCGCTCAGAAGCCCGCCGCC 68225 29 100.0 32 ............................. CCCCGGTTCAGGTTGGGCGGAAGCGCCACCTT 68164 29 100.0 32 ............................. GCGCATGACTCCGGCGCGGCGGGGCGTCCCCG 68103 29 100.0 32 ............................. GGCGCGGTTGTAGCGCCAGAGGTTGAGCAGAC 68042 29 100.0 32 ............................. TAGTCCAGCTCATTCCCAAGCTCTATCTGCAT 67981 29 100.0 32 ............................. CTGAATGAACATCTCGATCTCCTCGCCGTCGT 67920 29 96.6 32 ............................C CCAGCACCAGCGTGTAAAACGCCGTGGCCGAC 67859 29 100.0 32 ............................. TTCTGCGTTTCCTCAACCGTCAGGCAGTGAAC 67798 29 100.0 32 ............................. GAACACAGCGGTCAGGCCGTGTTTGGTGGTAA 67737 29 100.0 32 ............................. GCGAGGGCGGCGGGGACACCCCCGCGCCCCTG 67676 29 100.0 32 ............................. ACGGCTTGGGGCTGAGGGCGGAGATTCCGGGC 67615 29 100.0 32 ............................. ATGGGTGGGGCGCGGGACCCGTGACCCTGCCC 67554 29 100.0 32 ............................. AGCCGAGCCGGGCGCAACCCGTGCGCCACTTC 67493 29 100.0 32 ............................. CGGGCGCGCGGGTCGTTCCCCCCGGCGTAAAC 67432 29 100.0 32 ............................. AGGAGCGGGTGGCCGCCCTCGCAGACTGGCAC 67371 29 100.0 32 ............................. GCGGCGGCACCCTCCTCACTGTCATCGTAACT 67310 29 100.0 32 ............................. AAGCCCTGGATGCCGTGACGCTGGCCTACCGT 67249 29 100.0 32 ............................. CATGGACGATCACCACGCGGGGCAGGCGCTCA 67188 29 100.0 32 ............................. CGGGCCTAGACCGCATGTTGGAGCTTATCCCC 67127 29 100.0 32 ............................. GCGCGGGGGTGTGTCTGCTATGCGATTGTCAT 67066 29 100.0 32 ............................. CCTTAAGGTTAACAACAGCACGGCAAATAGTC 67005 29 100.0 32 ............................. GCAGCCCGTCCAGCCGCACGGTGCGGGCCTCG 66944 29 100.0 32 ............................. ACGCGGGCCGAGGAGATTCAGAAGCGCGGCGA 66883 29 100.0 32 ............................. TCGCCCCGACCCCCTGCCCGGTCGCGTATGGC 66822 29 100.0 32 ............................. CGGTAGAGCTGGGTGAGGAGGGTGCCCCGCGC 66761 29 100.0 32 ............................. TAGGGGAGGTGGGGGAGTATGGGTCGGAAGGC 66700 29 100.0 32 ............................. TTATAGATAGCGCGGCCCCGCGCACACGCGGG 66639 29 100.0 32 ............................. GCGGCCCCGCCGCCCCTCGAAGAGGTGGAAGA 66578 29 96.6 31 ............................C TGCGTTTCGAGGTCCGTCACGCGCTGCTGGG 66518 29 93.1 0 ...........................GC | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.5 32 GTTTTCCCCACGGGTGTGGGGATGGTCCG # Left flank : CGAGGAAGGCGGCGAACGCGAGTTCGCGGTGGCCACCAAAGCCTTCCTGGGCGAGGGGGGCCGGGTCACGGGCGTGCAGACCGTGCGCCTCGACTGGGAGGGCGGCCAGATGCGCGAAGTGCCCGGCAGCGAAGCCGTCATTCCCGCCGACCTCGTGCTGCTGGCAATGGGCTTTGTCAGCCCAGTCGGAAGCGTGCTGCAAGCCTTTGGCGTAGAGCGCGACGCCCGCGGCAACGCGAGCGCAGCCACCGCTGGAGAGCGCCGCTACGCGACCAATGTGCCCGGCGTCTTCGCCGCGGGTGACATGCGCCGGGGCCAATCCCTCGTCGTCTGGGCCATCCGCGAGGGCCGCGAAGCCGCTCAAGCCGTTCACGAGTTCCTGATGGGCTAACCTGCGGGGAGCAACACCTGCCGGGCCGCATGAAAATGTAAGCTGATTCCAGCCGAGGGCCAGGGCCTTCGGCGGGGGCGAGCGGGCTTTGAGGCCGTGTTGCCAAAGT # Right flank : TGAACTGCGGTTACATCTGGATGGGCCATCCGCTAAGCTGACAGGCGGTTGTCCTCTCTTACGTCCCCACCCACTCTGCTCGCATTTACGGCGGAACACACTCGCCTGGTCCTGCCCTCACCCGGAGCGGGGGCAACCCTCCTCGTGAATGGGCATCCTGTTTCCCAGGCTGCCCTCACGCCCACCACGCCCTTCATCACCGCTCAAGCCGTGGACTGCACCACTGTCGACGTTCACGATTGGGTGGGACGCCTGCACTTTACGAGCACGGACGGTCGGGTAGACGCGACGACCTACGTATTTCCCGCCAAGCTCGCGCCCGCGCCTTGGGAAGCGTTTATGGCGCTCAGCCGGATAGTGGACAGCCTTCCCAACCTCACGGCTTCTCTAGGGTATCCCACCCACCTGGTTCCCAAAACGGAAGGATTGAGCGTGCAGCCCCTCACGCTCGCAGATGTTGAGGGTATTGCTCTGGGTGCCTGGCGGTTGACAGAAGTTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCACGGGTGTGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 53468-52050 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMQF01000042.1 Deinococcus sp. RL contig042, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 53467 37 100.0 35 ..................................... GGCATCATCCGGCAGATCGAGGAACGCGGCGGCAC 53395 37 100.0 35 ..................................... TCCGGTAGCCATAGGGAACGCTGTTGCTGGGCCAG 53323 37 100.0 40 ..................................... CAGGGGTCGGGGAGAGGGGCGGCGGGCCGGGGGCGGACAC 53246 37 100.0 37 ..................................... GAGTAGTTGAGAGGGGGAGAAAAAATCCCCCCTAGGA 53172 37 100.0 36 ..................................... CTGCGGTTCGGAGGCGAGCCGACGGGAGAGCGCCTG 53099 37 100.0 36 ..................................... CCCAACGTCCCGGCGCGTCACGCCGCAGACGGTCAG 53026 37 100.0 34 ..................................... TCAAGGGTATTGTTTTGGACATTGTAATAGCCGT 52955 37 100.0 38 ..................................... GCCATAGCGAGAGTGTTTATCTCGCGGTTATGCGCGAG 52880 37 100.0 35 ..................................... ACTCTCCAGCGTAAAGGGTGTCAACAGGCGCCCTG 52808 37 100.0 37 ..................................... CGAAGTCGTACTTTCCGGGAACGTCGTAATACACGAT 52734 37 100.0 34 ..................................... CTGAATGGTGAGGTCTGTTCCTCGGTAAAGGTAC 52663 37 100.0 36 ..................................... GCCGAGTCGCGGCACGCTTTCTCGTCTTTCCACGCC 52590 37 100.0 35 ..................................... ACGGGCGGCACGATGTACGTCGCCGTCATCGGCAG 52518 37 100.0 35 ..................................... TTTTCGAGGGTATTGTTTTCCACCGCATAATATGC 52446 37 100.0 35 ..................................... ATCCCGTACAAGCCTATGAAAGCGCGGCTAGGTGG 52374 37 100.0 34 ..................................... AACGGCGGTTAGTGTTTCCACGTGAACCTCAAGC 52303 37 100.0 34 ..................................... CAATGACCCGCGCCGGGTAAGCGTCCTGCTAGAG 52232 37 100.0 33 ..................................... CTGCATGGGGCCGCCGAAGGCAGCGCCGAAGCC 52162 37 100.0 39 ..................................... TATGACGTGCGCTATTGGTGGCTTGCGGAGGAATCCGGC 52086 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ======================================== ================== 20 37 99.9 36 GTTGCAGCCGTCCTTCGGGGCGGCTGAGGATTGAAAC # Left flank : CTGCACCGCTGAGGCCCCCGCCCATGATTGACCTGCTGATTTGCTACGACGTCAAAACGGACACCGAAGCCGGACGCCGCCGCCTGCGCCGGGTTGCCAAGGTCTGCGTAGCCCACGGCCAGCGCGTCCAAAACAGCGTCTTTGAGGTCAGCGTCACCGACGTGCAACTCCTGACCCTGCGGCAAAAACTCCTTGCGGAGATGGACCCCACCGAAGACAGCATCCGCCTCTACCGCCTGCGCCAGCCCCGCGACAAGTTTGTAGAAGCCCACGGCCTCGACCGCTACCGCGACTTTAGCGACCCATTGATACTGTAGTCTCAGCGCGAACCCCCCGTGACCATGAAAACCTGGGGGGGTTCGCGCAAAGAAAAAAGTCCCTCTGGGACGCGATTCATGACAATCGACCTGCCCGCCAAGGCCCCGCGACTGGACAACGTGGGGGGGGTTCGCGCAAACTGGTTCTGGGAAGCCGTCCTGGACGTATCCGGGAGGCAACCC # Right flank : AGGGCGGCTGAGCGCTGAGTGCCCACCAAAAGCAGGGGCCAGAGCCTCTTTACGGAAGCTCCAGCCCCTGGCAGGAGGAGTGCTTAGCGGTTGACGAAACGGCCACCGTGGCGGGCCATCGTGGCCTCCACGACATCGAGGGGAACGTCGTCCTCGATGGCGATGGCACGGCCTCCGGCATCAACGGCGCTCTGGATTTCGTTGTAGTGGGTGTCGTCAAGGTCGTAGCGGTCGTCGTAGCGGCGGGTTTCGCCCTGGGCGGCGACGCGGGTTTCCATACCGTCGCCGTGGACAGCGGCGTCCGCCGTGCCAGCCGCCGCGCCGATGCCCGACCCCAGGGCACCCATGCCCAGCAGCACGGGCACCGCCGCGAGGCCACCCGTCGCGGCGACCACAGCCCCCGCAGCTACGCCGGCCACCGCGCCCAGCGCCGTGCCCTTCAGCGCGCCGCCCGCCATATCCGCAGCGTCGCCGCCTCCGTCAACATACTCGGTGGTGGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCGTCCTTCGGGGCGGCTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.50,-15.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 1 28-1643 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMQF01000006.1 Deinococcus sp. RL contig006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28 29 100.0 32 ............................. GCGTGTGGGTAGGGATTTTCTGGATTCTGGAA 89 29 100.0 32 ............................. CGGTCTTCAGGTGCGCCACCCCCTCCCTTGTG 150 29 100.0 32 ............................. AATCCATTTCGCCGCGCGCCAGGCCGATGTAT 211 29 100.0 32 ............................. CCGCAGATCGGCCTCAGCCGCCGCGCTGTCGA 272 29 100.0 32 ............................. CCCACCGACCCGGTGGCAGAACTCAATGCCCG 333 29 100.0 32 ............................. CTCGGCGGTGGCCACGTACCGCGCGAGGGGTT 394 29 100.0 32 ............................. GTTGATGCGGCCTTCTTGCAGTCGCTCGCCAC 455 29 100.0 32 ............................. GCTTGCCCACCCCTTCACGGCCTTCCTGTGGC 516 29 100.0 32 ............................. GGCGCTGGGGACACCGCACCATCACCCATTCC 577 29 100.0 32 ............................. CTGGAGTTCGCGCCCTACACCGGGAGCACCCT 638 29 100.0 32 ............................. GGTGTCGCTCAGCCCGTCGGCCAGCCCGTCAA 699 29 100.0 32 ............................. CCGTCCAGCGTGACGAACACGGCCCGCGTGTC 760 29 100.0 32 ............................. GCGTTTTCCTCCACGATGCGGACGGGCAGGAG 821 29 100.0 32 ............................. GGCCGCCTCAGCTCGGCAATCTGTTCGCGGGT 882 29 100.0 32 ............................. CGCCTGGAGGCCGACCTAGCCCGGCAACTGGA 943 29 100.0 32 ............................. TTCACGCACCCGCTCGGCCACGTCCAGCGCGG 1004 29 100.0 32 ............................. ACGGGCACCCCGCGCGAGAGCGCCAGCCGGAG 1065 29 100.0 32 ............................. GCGCTCCCGTTCATCTAACGGCGTGTCGGGGT 1126 29 100.0 32 ............................. CGGCGACCGTGGTTTACGCCGAGCTGTACCGT 1187 29 100.0 32 ............................. CCGCAGATCAGCGCCTCGGTCGCCAGGGCGAC 1248 29 100.0 32 ............................. GATTTTCGCCGGGTCACAGAGGACGGCCAGCC 1309 29 100.0 32 ............................. CGCGGAACCCATTCCCCAATGGCCGCGCTTCC 1370 29 96.6 32 ............................A GACGGGGGGCGACCTCGCCGCCCTGGCAACCT 1431 29 100.0 32 ............................. TTCGCCTTCCTGCCATCCGTAACCCCGGACGG 1492 29 100.0 32 ............................. TTGAACGGCCATGTGGGTTCCTCCTGGGAGTG 1553 29 96.6 32 ............................T CTGGGTCGTGGCGATGGATTCATGCCCCAGGA 1614 28 82.8 0 ...................C..-CT...T | AA [1632] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.1 32 GTGTTCCCCACGGGCGTGGGGATGGTCCG # Left flank : TGCAACTGTCAAACCCACGCGTGGAAGG # Right flank : TCTCCTACCGGCCTTCTCGTGCGTCTTGTAGCAGCTCGCCTGCCAAGCTGAGCGCTGCCGGACCAAGGGGGCTGACGGTGACACCCAGCAGGGTGCTCAGCTTGTCGCGGCGCGGGCCGCTGAGGTAGCTCCAGCGCTCCAGGTCGGCGCGGTGCAGCCGGGCGGCCTCGTCGCGCAGCAGCCGCACCGCGCCGTCGTAGTACCCGGCCTGAAACGCCGTGCGGGCACGCTTTTCGTGCTCGACCATGCCCAGGCCACGGGTGGCGAGCAGCACCCGGCGAGCTTCTTCCTCGCCGCCGAAACCGTACAGACGGTCAAGGTGATAGACCGCCTTGGGAAAGCGCAGACCCGCCGCCGCCCGCCACGCATGGGGCAGCCGCAGCGGGAACTCCGGCCAGCCGTGGATGTGGGTCAGCAGCGCCGGGTACAGCAACTCGACCGCCACCGTTCGGGCCTCGGCCAGCGCGAGCAGTTGCTCCTGCACGCCGTGGCCGGGGCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17905-18444 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMQF01000043.1 Deinococcus sp. RL contig043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 17905 37 100.0 34 ..................................... AGTGCGTGCGATCACGGTGGACCGGATGACGCCC 17976 37 100.0 35 ..................................... CATCTCCCAGCCGAGCATGAGCCACCGCCCTAGGG 18048 37 100.0 35 ..................................... GATCTGCGCGGTGAAGGCATGCGTGTCCATACCCA 18120 37 100.0 33 ..................................... CACTGTAGTTAGCCGGTCCCGTGCCCCCTTTGG 18190 37 100.0 35 ..................................... ATCTTGGGGACTGTAGCAGCGGTAGCCCGATACCC 18262 37 100.0 36 ..................................... CAGGGTATTGTTTTGCACTGAGTAGTACGCGTGAGC 18335 37 100.0 36 ..................................... GCCCGCCGAGCGCCTGCTCGCTCGGCTGCGCCCGTT 18408 37 73.0 0 ........................G.CTTGC..CTTT | ========== ====== ====== ====== ===================================== ==================================== ================== 8 37 96.6 35 GTTGCAGCCGTCTTTCGGGACGGCTGAGGATTGAAAC # Left flank : TGGTCGTCGAGATGGGTGGTCAGCGCCTCTATCACGCGGGCGACACCTGCCTCTTTTCGGACATGTGCCTCATCGGGGACCGGGGCCTTGACGCCGCCCTCCTTCCGGTCGGCGACCACTACACCATGGGGCCAGAGGAAGCCGCGCGCTGCCTGGAGCTGCTGCGCCCCCGCGTGGCGGTGCCCATGCACTACGGCACCTTCCCGCCCCTCACGGGCGACCCGCAGGTCTTCGCGGCGGCAGGCCGGGCGCAGGGCATCGACGTGCGGGTGCTAAAGCCGGGCGATACCACCGAGCTGTAACCCGCTCTGACACTCCGTCAGCGCGAACCCCCCGTGACCATCAAAACCTGGGGGGGTTCGCGCAAAAGAAAAAGTCCCTCTGGGACGAGCTTCATGACAACCGACCCGCCCGCAGAGGCCCCGCGACTGGACAGCCCAGGGGGGGTTCGCGCAAACTGGTTCCGGGAAGCCGTCCTGGACGCGTTCAGGAGGTGACCC # Right flank : TGGCCCTCGCCCTAGCCCAAGCCCTGAAACTGCACCTGAACGCCCTGGCCGTCGGCAGCCTGGCGTGCTTGGGCCAGGGCGGTGTGGGCGGCGGGGAGGAGGGCGCGGTCGGGGCGGTGCCACAGGGCCTGGGCGAGTTTGCTGGCGCGGCGCACGAGGAGGTGTTCGCCGGGGCGGGCCAGGGTGACGGCGGCGAGGAGGGCCTGAGCGCTGGGCGGCACGTCCGAGAGGGGGTCGAGGGGAATGTGGGCGGTGACCCGCTCTCCGGGACGCCGCAGGCTGACGCGGGCTTCGGTCAGGGCGGGGCGCTGCTCGATGAGGACTTCGGCCTGTGGCCCTGGCAGCGCGGGGGGCGGGAGGCCCCGGCGGGCGGCGTTGGCGAGGTCGTGGGCAGCTTGCATGTGGCGGCGGGTGCGTGGGGCATAGGTCACCCGCAGGGCGACGGCCCGCGCACCCGCCTCATCCAAGACTTCCCGCGTGAGGTCCGCAAGCAGGTGCGG # Questionable array : NO Score: 9.09 # Score Detail : 1:0, 2:3, 3:3, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCGTCTTTCGGGACGGCTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 1 36648-35752 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMQF01000059.1 Deinococcus sp. RL contig059, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 36647 37 100.0 34 ..................................... CCAGGTGATGATCGAGGCGGGCGAGGACAGTGGG 36576 37 100.0 35 ..................................... ACGGGGGTGGGCAGCGCCACGGGCCTCCCGGACGG 36504 37 100.0 34 ..................................... CATCTCAGCGCTAAGCTGCCCCAGCCCCGCAGCA 36433 37 100.0 36 ..................................... AACGGGCTTTTAAGGCCCCTGTATAAAGTTTTGTGG 36360 37 100.0 36 ..................................... GACGAGCAACGTGCTCGTCGAAGGCTTGGAGACGGC 36287 37 100.0 33 ..................................... CCATGATGGCGGCGAACTCTGCCGCCATCTGAA 36217 37 100.0 36 ..................................... TCCGGGTGCAGACGCCTAGGCGTCCCACACGCGCTC 36144 37 100.0 33 ..................................... ATCGCAGGGGCGGCGAGGCCCGCCAGAATCCCA 36074 37 100.0 35 ..................................... ATGGGATGCCTCCAAAGGCGAGCGGCCCCACCGGG 36002 37 100.0 34 ..................................... CGGGAACGCCGGGGCCTCACGGACCTTTATCGGG 35931 37 100.0 34 ..................................... GCGCGCAACGTGCACGAGGCCGGAAAGCGTTGGA 35860 37 100.0 35 ..................................... CCGTCCTTCTCACGGCGGTACAGCGGCACGTTGCC 35788 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 13 37 100.0 35 GTTGCAGCCGTCTTTCGGGACGGCTGAGGATTGAAAC # Left flank : CCGCGCACCTTGGTCGCGATGACCATGTCATCTCGGCCCCCGCGCGACTTCAGCCAGCGCCCCACGATTTCCTCGGACACCCCGCCGGGATTGCCAGGCACCCAGTTGCTGTAGATGTCTGCCGTGTCGATAAAGTTGCCGCCCGCCTCCCGGTAGGCGTCCATCAGCGCAAAGGACGCGCCCTCGTCGGCGCTCCAGCCAAACTGCATAGAGCCGAGGCCCAGGGGAAAGAGGTGCAGGCCGCTGCGACCGAGCTTGCGGTAGGTGGTCATGGCCACAGGCTAACGCCCCCCGCCCTACCACCTCCCCTGACACCCTGTCAGCGCGAACCCCCCGTGACCATGGAAACCTGGGGGGGTTCGCGCAAAGCTGGAAGTGCGTCCCCGTCGGTGTTTTTCGGAACACCCCCACCGAGAACGGGTCCAAAACTGGACAGCGCGGGGGGGGTTCGCGCAAACTGGTTCCGGGAAGCCGTTCTGGACGCATCCGGGAGGTGACCC # Right flank : GGTTCGGGGAGGGGGAAGCTAGCCGAGTGCGGCGTTCAGCTCATTCCGCAAGCGCCGGGCCGCTTCCCGGCTCGCGGTCACGCTCAGGCCGTCCGCGTACTGCACCGCTCGGCTCGCGCTTGCCAGCGCCCCCGTCCCGCCGGGGTGAAAGGCCGGGGCGAGGTCAGCGGCGGCGGCTCCCTGTGCCCCCAGGCCGGGAAGCAGCAGCAGGGCGCGGGGCATGGCGGCCCGGAAGGCGGCGAGGTCGCCGGGGTGGGTGGCCCCCACGACCGCGCCGACGCTGGCGTACTCGCCCTCCGGTTCCTCGGCCCCCAGCCGCGCCACCTCCGCCGCCACCCGCTCGCTGAGGCCGCCGCCCTGGAGGTCGGCCTGCCCCGGATTGCTCGTCTTGACGAGGACGAAGACGGCCCCGCCGTTGGCCCGCGCCGCCTCCACAAAGGGCGTGAGCGTCTCGAAGCCCAGAAAAGGATTGACCGTGAGGGCATCCCCCGCGTGGCCCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCGTCTTTCGGGACGGCTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.50,-12.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : NA //