Array 1 31024-29275 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCFD01000018.1 Streptococcus ruminantium strain MO591, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 31023 36 100.0 30 .................................... CTACACTTGATGTACGTTTCAACCCGAGGG 30957 36 100.0 30 .................................... TAACTCCTAATTTACTCGCAAGCTCCTGTT 30891 36 100.0 30 .................................... TTTGACGTGTTTCTCATAGCTTTCAGCTAA 30825 36 100.0 30 .................................... GAAAGCCTGTATAAGTCAATAGTCCCTCTG 30759 36 100.0 30 .................................... AACTAAAGCTAACTACGAACGTGAATTTTA 30693 36 100.0 30 .................................... GATTTTAAATTTTTGCTCTAACAAAGGATA 30627 36 100.0 30 .................................... ATTTCGGCTGCGATAACAACAGGTACACCT 30561 36 100.0 29 .................................... CAACCCTAAATCTATAAACTCTTTCCTTA 30496 36 100.0 30 .................................... ATCTAAACGCTGATATGAACGTTATCCGTT 30430 36 100.0 30 .................................... AAGATAATCAACCTGTTAATGGTGTTGTTT 30364 36 100.0 29 .................................... TGACGCTTGGGCACTGATTGAACTGCCAC 30299 36 100.0 30 .................................... CATAGGAACCGCGTTTATTGATTGGATGAA 30233 36 100.0 30 .................................... ATTTGGTCTTGTTAAACCTTGTCGCTCCTC 30167 36 100.0 30 .................................... CACATCGGCAATTACAAATATACTTACTAG 30101 36 100.0 30 .................................... TAATCCTTTCGTTCCTCTAGTAAATCTCCA 30035 36 100.0 30 .................................... CTCGTGATGATATTTTGACGACAGGGCATG 29969 36 100.0 30 .................................... TCTCATCGGATAATCATTTGGGCTGTAATC 29903 36 100.0 30 .................................... AATGCGCAACGCCTGCTATTATCTTCGTGT 29837 36 100.0 30 .................................... TTTTCACGATTGATTCGCTCCACCTCTGCT 29771 36 100.0 30 .................................... CGCAGAAAGGCCTGACTTCCCTTTGGCAAG 29705 36 100.0 30 .................................... ATCTCAACCTTATTATACAAAACATTCAAA 29639 36 100.0 30 .................................... AAGATGATGACTAGCAAACTAATCCAGAAC 29573 36 100.0 29 .................................... CTCAAGTGTTGCGTTGTTCAATGACAGTT 29508 36 100.0 31 .................................... ACATCCGTTTAAACTGCGTTCAGATATAGAG 29441 36 100.0 30 .................................... AATTTGATTGATTAGGTCAGATGCGAACAA 29375 36 100.0 29 .................................... CAACTCTCCATTTTGTTTAGCCAGTTGAT 29310 36 86.1 0 ...............................CCCCT | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 99.5 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AAAATATGGATGATTATTTGGGCTATTCTTCTTTTACAAGAATCGCTCAACACTTAGAAGTGCTCTGTCGAAAATATCCATATTTTCATGTTATGATATTTCCTTCTCAAGAGGGATATCTATACTTAAATGAAAGCACGATTGAAACGGTGAATATTTTAGCAGATCAAATTGAGCATTATCCAGCACTTGAATTTCTATATGAGCGCTATAAGGTCTCTTATCCTTCCAATAATCCATTAGACAAACAAGAGTTTTTGACTTCTTTGAGAAAAGTTAGCTCCTATTTGTTTTGCTCTGAGATAAGCGAAGTGGTTAGTCTGTCATATAGAGATCTACTGACGTTAAAGATCATAAATACCCTTTATCAGTATGATACAAAGCCAAAATTTGAGAAATATTCCTTGTCTGTTTTGGAAGAAAATTATCTTAATACCTAAAGTTGACAAGTATTTTGATAGGGATTATACTTGGAGTAAGAGAGTATAAAAATCATTTGA # Right flank : CTAAGGTCATTGATTTCTTGACCTTGTTTTTGTCTTCTTAAAATGAAGACAAACTTTTTGTTTTGCCCTGAAATGTAATTTTAAAAGGCTTTTGAATGAAAGAAGAAGCGATTTATTTCTCCGTTGAAGATCGCTTTTTTAATGTCGCGATTTCTTTGAAACAACAACTTTAAATTTTTAGTGATCCTGTTTTGCTTTTTCTATGATAAAGTAATGAAACTGTTATGCCGTTGTAGTGAGTGTTTTTCAAAATTCTTAGAAAATGATAGAATGTTACCATGACTATATAGATAATAAAATACTTTTGTCTCATAAGGAAAACTATAACAACTTCTCAATACTTTGCGGTCTTTTCCAGTTGTTCTCAGAAAATGCAATAAGTGCCTATAGGATGATCGCTTCTATTTGGCTTATCACTATAGAAAGAATATCATGATCTTATTCGTAGTGTAAAAAAAGAAGTAAACCTTTCTATCTTGTAATGTAAGATAATTTGTCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //