Array 1 3586-2761 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUAN01000012.1 Lactobacillus crispatus strain NCK972 NODE_12_length_75933_cov_187.362556, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3585 29 100.0 32 ............................. TAGAGAAGTTTGGACTTTAAACGACTTAAATT 3524 29 100.0 32 ............................. TGTGCTACCTTTTCCCATGACAAAATAAGTCG 3463 29 100.0 33 ............................. CGTGGCAAAATGATAGCCATGCAGGTACATATG 3401 29 100.0 32 ............................. AAACCGTTATGATGTTAGGTTTTGCCTGAAAC 3340 29 96.6 33 G............................ CTTCGTTATGCCAACCGCTTTTTTTGCTGGGCT 3278 29 100.0 32 ............................. GCTGGCAAACAGACGACTTAGCAGGGCGTTTG 3217 29 100.0 32 ............................. ATTTCATAAATAGTCATAGCCTAATCCTCCTT 3156 29 100.0 32 ............................. GAAGCCACAAGTGCAGATGTATGAGATGGATT 3095 29 100.0 32 ............................. CAGAGATTGGGCATTCTGGCTTAGAGATATCC 3034 29 100.0 32 ............................. TAAGCAAGAAACAGGCTTCATGCCGCAAGATT 2973 29 100.0 32 ............................. CCCCTTGCGTTACCTAAGTAGTAGCGACCGGC 2912 29 100.0 32 ............................. ATATGGAGGACATATCAACTCCTTAAAATTTT 2851 29 100.0 33 ............................. GTCACCCATGCGGGCTTCACCTTTGGAGATGTG 2789 29 93.1 0 G................T........... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.3 32 AGGATCACCTCCACATACGTGGAGAAAAC # Left flank : TTCTTGAATATAAGGCATTTGTTCGAGCAACTCTTCTGGAGTTTTCGCACGTCCACCTTTGTATTCGCCGTACATTTTTGTTCTAAAAGTGACTTTTCCTGCATCAAAAGCTACCAATACGTGGGTCGGATCAACGTCTTTTAAAAGGACATCGAGCATGTTCTTAAAAGCGTAAATGGCATTGGTATGCAGGCCGTCTGGACTCTTGAAAGATTCTAGTTGACGATAAAGAGCGTAAAAGGCTCTGAAAGCTACAGAGTTACCATCGATTAGAAGTAATTTTTTATCTGCCATTTTATTCCCCTTTTATAAAAATTGTTCTCTATACTTACTTATCTATTTTACCAGTTTCAAGGGTAATCTTTTAATAGGAAGTTTAATGGAAAAGAAAAAAGCTCCGATTATAGGACTTTTGCTTGTGATTTTTCTTTCACTGCGTCAATTTAGCTCCACTTTTGTGAAGAAAATAAAGTTTCAAATCGTGTACCAAAGTTATTGTA # Right flank : TTTATCGAGGTTAGGACATGCTCTCTATACAAAACTAGACAAACTCGCTTTTCTAGTGAGTTATGGAGTCTTGTTAAAAGCGCCCGACTTTAGTCGGGCGTAGGTTGACGGTGTTCAGTTTTTTATGAAATTGTAACGTTATCTTAAAAATTGGTCTAAAATAGTGTTATATTTATGACGATAAGTCATAAAATTACGAAACTGTCAAATCTTTTGTGTAAATAGATCTTTCTCATAGATCGATTTTTTATTCTTTATTTAGTCAAAGTAAGATTCTAAGGTGTCCTGAACCTGACCAAAGCCCGGTCCTAAACAGCCAACTTCAGTTCCTGAACCAAATAAACTAACATCGGAGCCCAACAAACCTAGTGTGAAAACTAATAATGACAATCACGGTAAATCAAAGAAAAATTCAGGTACTACAAAGCATTCAAGCAGAAACACGAATAATAATCCAAAGGCTAGAAGAAACGTAAAACGTCAATATAACTCAAATAATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGATCACCTCCACATACGTGGAGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 82825-82613 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUAN01000008.1 Lactobacillus crispatus strain NCK972 NODE_8_length_88192_cov_204.542996, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 82824 28 100.0 33 ............................ AAGGTAAGCAACAATGATTTTGGACGTGATTTA 82763 28 100.0 33 ............................ TGAACCAGATCAGTAGTAGCAGGTGTTCCGTTA 82702 28 100.0 34 ............................ GTCACCCATGCGGGCTTCACCTTTGGAGATGTGG 82640 28 96.4 0 ................T........... | ========== ====== ====== ====== ============================ ================================== ================== 4 28 99.1 34 GGATCACCTCCACATACGTGGAGAAAAC # Left flank : TTGTAGTGTATTATTTGCCTGACTAAGCTCTGACATAATTTCTTTGAAGCATTCAGGCTTTAATTTAGCTTTTTGTTGTTCGAAGGCTGAAGCGGTCATTCTAGAATTCATGTCAGGAAAAGCATGAAAAATTTCCGAATTCAGGCTGCCAGCTCCCATGTTAAGAATTAACTTAATCAAATCAGTGGAATTGAGCTTACGACAGCGAGTAAAAGCTTGATCAGATACAGAGAAATCGTGAATGTTGTCAGCGATTTTATTGATAATACTATCCATCAGTTTTAAAATATTTGAGTGAAGGGATTTCATAAGAGGCACAGCTTTCTATGAAAGACCAGATAATATGACGAAAGTGAGCAGAAGGGTAAATAAACTCTGCTCACTTTTTATTTTAAAAAGAAAAAAGACCGAATCAAAATGATTCGATCTTTAAAAGCTGTCGATATAATGTCAATGTCTTAACTTAATGACATTGCAATTTAGGATTTGCTTTTTGTTAT # Right flank : ACTAAAAGAATCCCATCGTTAAGCCATTTAGATTTAATAAAAAGCTGAAATTTATTCAGTTTATATTTTATACAACAATAATTATACCAGTGCATCCCTTATCCTTCACTCCAATAAACAAATCCAAACTAAAAAAGTCCCAAACGGGACTTTCTTCACACATCTAATCTCTCAAAGCACGATTGCCAATATCATGGCGGTAGAAGCAATCTGGCAGATCAAGCTTACTCAAATAAGAATACACATTATCCTGCGCCTGGACTAAATTGTCAGCTTCCGAAATCACCATGAACAGGCGGCCGCCATCACCTATCAGATTATCCAAATCACCTTTGACGTTGGCGTAATCGATATAAGTATTGCTGCCATCAGGCAACTTGCCGATCTTGACGTTAGGTGCCGGATGCGTTGGATAACCTTGGCTGCAGACAACCACGCCCAAGATAGAATTATCATTTTCTTCAATCTCAGGCAATTTTTCATGATTTACTGCTGCGTCA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCTCCACATACGTGGAGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 121990-122569 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUAN01000003.1 Lactobacillus crispatus strain NCK972 NODE_3_length_145614_cov_147.376596, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 121990 29 100.0 32 ............................. GTGCTGGGGATTGGCGGTAAGACTGTAGCCAA 122051 29 100.0 33 ............................. TTGAAGAATGTTAACGCACAATTGCAACAACAA 122113 29 100.0 32 ............................. ATATTTGCTATTAAGCTACTACGACAATATTG 122174 29 96.6 32 ............................C AAGCCGGCACACTTGACTATCGTATTACTTCA 122235 29 96.6 32 ............................C TACAATGATGAAATACATTCAGCAAGGAAAAA 122296 29 100.0 32 ............................. TAACAATTCTTATATTTCTTTATTATTTAAAA 122357 29 100.0 32 ............................. GAATATGGATCCTCGCTAGCTTCTGTGTCGTC 122418 29 96.6 32 ............................C ATGGACAGTGCTCTCGTTGGGGCAGTTGCTAC 122479 29 100.0 32 ............................. TTGGTGCAGTGAATGAGAAATATGGGAATGCT 122540 29 82.8 0 ...........AC....T......T.A.. | A [122561] ========== ====== ====== ====== ============================= ================================= ================== 10 29 97.3 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGTTCTGATTTTTATCTCCTCTCTTAATTCACCTAAGCTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATAGGTATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGTAAGAAAGATTGGCAGACAAATAATATTTTTGTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : TGTCCTTGAGCGCACAGATAAATAGCCTATAAACGCTGGTATGCCAGCATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGATAACGTGCTGGATTTTTAGGTTGTATAGATAAGTGTCCGTTTTGGGGAGTTGAGTTGGTTAAATTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATGGAAGGATGAGAAATATGGTTGACTATATTGCAAAAATTAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATGTGGAAATGTTTGATACGCCTGCCAATATTAAACATTGGGAAC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 144587-144859 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUAN01000003.1 Lactobacillus crispatus strain NCK972 NODE_3_length_145614_cov_147.376596, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 144587 29 96.6 32 .............G............... AATATCATCAAGCTGGCTAATTACTGATTGTT 144648 29 89.7 32 T............G..............C CATCACAAAACATAGTGAAGCAGTTACACCCA 144709 29 100.0 32 ............................. GTTTCCACATACCTTGCATTCAGCTGATTTAA 144770 29 100.0 32 ............................. ATCTCTAGTAGCTCCTACAAAAACATCAATAT 144831 29 89.7 0 .......................AT.G.. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GACGATTATTAGTAATGGTTAGTTCATTTTTGCTTTCACCAATTAGTTCACAAACAGTAGAAGTAGACTTGCTTACATCAATTCCAAAAGTAACTTGCATAATAAAAACCTCCAAAACTTAGTAGTAAAACGTATTTACTTAAGAAATCAGATCTAATTTTCTAAACTCGACATCTAGTGTCCACATTCTTCGAAGAGACTATTGAAAACTTAAGTAAAACTGCCAGTTTATTATGCGACATCAAGTGTCTAAAGACCTCAGGGCATATCGTTTTACTACTACTTTAATTCTACAAAAGAATAAAAATAGTGAATCAATTATCCCGTCGGATAACTAATTCACTATTTAGCTTAGAATGTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : TATATTGGGATTCCTGAAGAAATCATGAATGTAATTATACGAGACCACAAGGAAAAATTTTAAAATCTCAGGCTTCTAAAAAGCAAAAAGAAATTTTTAATAGTTGGCAGGAAAAATGAAAGAAAATATGTAAAGACAACTAAAATAATCAACAGAGCTGCTCTTGGAATATTTATTGTTGCAGTAGTAATTTTTTATTATAGGGTTAGTGAAGTAAAATGACAGTTAGTGAAGCACAAAAAAAGACGACTAAAAAGTGGGATACCAAAAACAAAACTCGAAAACAGTATTTAAATCGGTTACTAAAAATTTTATTTTGAAAGAAGCCACCACAGAGGACCTTGAACAAATTAAAAAGTATTTTGGGCAAAGAAAACACGGAAAAGATTGATTGTGGTAGAAAACGCTGCATGAATAATTGTAATTTTTAGTAAAAAGTTTTGGAGGTACTTTTTAATGATTGATTTAAATAGTTCAGATATTATGGACGCACAAGAAGC # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : TATTCTCCACGTGTGTGGAGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.20,-6.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //