Array 1 154847-157323 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADFBH010000009.1 Streptococcus uberis strain GCPRG116 Contig_9_191.03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 154847 36 100.0 30 .................................... ATACTAAACTAGATGTTAAATACCGAGTGT 154913 36 100.0 30 .................................... CATATCTGGATCATAACGCCAGCTATCATC 154979 36 100.0 30 .................................... CTGACTATGTTGAGGAAACATTGTCACCAG 155045 36 100.0 30 .................................... TTTACAACAAAACATTATATCGTTGACGTA 155111 36 100.0 30 .................................... TCATATTATAAACATTGTTGCCTAATCCGA 155177 36 100.0 30 .................................... CAAAGGAAAGCGGTGAGTGGTGGGGTATCA 155243 36 100.0 30 .................................... GAAGATAACCAACAGAAACATTTAAGTAAT 155309 36 100.0 30 .................................... AAAACTGTAATCGATAAAAAAACCAACGAG 155375 36 100.0 30 .................................... AGTATCAATATAAGTAATAATTTCTTGAAC 155441 36 100.0 30 .................................... AGAGAGGGGTTGATGTTATCCATGTCAAGA 155507 36 100.0 30 .................................... CTCTACTTGCTGAAAATGGTTGGGCGAACA 155573 36 100.0 30 .................................... GCAACTGATTTATACTATGAAAAAATGACT 155639 36 100.0 30 .................................... GCTACCTCTTTCTTCTTCAAAATGTAATAA 155705 36 100.0 30 .................................... TGTCGTGACATCAACTGTTGCCTTTCCAAT 155771 36 100.0 30 .................................... TGGTGCTGACCAAATTGCACCGCCAACCTT 155837 36 100.0 30 .................................... CTCTACTCTCAGGAATCCTTATAGTTTTAA 155903 36 100.0 30 .................................... TCTATACTCAATTGTGAGTGTCTCTGACAA 155969 36 100.0 30 .................................... TTTTTCGTTTAAAGATTCGATGATTGTTTT 156035 36 100.0 30 .................................... AAGCGGTCAAGGATTTAACCAAGGCCAACA 156101 36 100.0 30 .................................... TGAATTTGTAGTTAGTAGCTATAAAGAAAA 156167 36 100.0 30 .................................... GGTCATTAGAGCCACCGTGACAGATAGCAG 156233 36 100.0 30 .................................... AGTTAAAACTAGTTCAACTCCCGTTGTAAT 156299 36 100.0 30 .................................... ATAAATCCAACGATGTCACTTATTAAAAAA 156365 36 100.0 30 .................................... GAAATATATGAACGAAATTTTTAATTTTAA 156431 36 100.0 30 .................................... GGCCCTCAAGACAAGAAGGCCAATAAAACT 156497 36 100.0 30 .................................... GACTGCTAGGATTGCGGATTTAACAAATAA 156563 36 100.0 30 .................................... GCCGGCGGCCCTGTCTATACTGGTGTTTAC 156629 36 100.0 30 .................................... GTTTTTGTTGTGATTGAAGCGTTTAAGTTA 156695 36 100.0 30 .................................... CGCTTGCCTGTAATCGACATATGTTTGCCC 156761 36 100.0 30 .................................... AGCTTTTTCTTTCGTTTGATAATGTCTTGA 156827 36 100.0 30 .................................... CGATTCTGTCTGCTAATGCATCAACGCCTT 156893 36 100.0 30 .................................... GGTCCAGAACCAGATTTACCATTTTAATTT 156959 36 100.0 30 .................................... GGATTCTGTTGGTCCATAATTTGGAGTAAT 157025 36 100.0 30 .................................... TTGGAGTACATCACTTCCAATCGCCAATGA 157091 36 100.0 30 .................................... CTGTTCAAACTGACGGAATCTCAGCATACT 157157 36 100.0 30 .................................... ATGGAAATAACCACTCAAACTAAGAAAAAA 157223 36 97.2 30 ...................C................ CGCTTAAGTTGATACTTCGTGCGTCGCAGT 157289 35 83.3 0 ................G....AT....-G......T | ========== ====== ====== ====== ==================================== ============================== ================== 38 36 99.5 30 GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Left flank : AAAAGCCAGAAGTTAAATCTATGGTTGATAAACTTGCTGCAACAATTACAGAATTAATTTCTTTTGAATGTTTGGAAAATGAACTTGATTTAGAATATGATGAAATAACGGTGCTCGAATTAATAAAAGTATTGGGTGTCAAAGTTGAAACACAAAGTGATACCATTTTTGAAAAATGTCTTGAAATTTTACAGGTCTATAAATACTTAAACAAGAAAAAATTACTTGTTTTTATCAATACGGGTTCCTATTTGAGCGAAGAAGAAGTGGAACAATTGTTTGAGTACATTTCTTTGTCGAATCAATCTGTTTTATTTTTAGAACCACGGAAATTATATGATTTTCCGCAATATATTTTAGATAAAGATTTCTATCTTATGCCGCCAAAAGTGGTATACTAGTAGTAGAATATATCCCAATTAATGGAATCTTTCAAAATTGAAATCCTGCTAAGATGAGTAGCGCGATTACGAAACTTTTTGGAAAAATTCTTCCACGAG # Right flank : TTACATAAAACAGCCACTTTCTAGAGTGCCTGTTTTTTCTTACTTTTCTTATTTTTGCATGATTTCTTTGATTTTGTGTGACTTTATCCAGTCTATTGTTTAAAATGTATAATTATTAATAAAATAGTCTTAAAAATGTATGTCGAGAAATACGTTTTCAGGGTTTTTCTTGTTTTTTTGATGCTTTTAACCCTATTAAAATAGGCTTTTATAGTAATTAGATTTTTTAGTCAGTTTTTTCTTTGCAAACCCTTACATATGTGTTATAATGAAAAAAAATAAGAGGAGAGATTCCGATGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGTCGTGGTTTGATTGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGGTTTACTCTTGATGCTTTGCAGCTAGTTACTCCGAGTCGTGAGCATTTGGATGAGCATTATCATCAATTGAAAGATAAAGCTTTTTATCCTGGTTTGATTGATTATATGATGAGTGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //