Array 1 27737-28088 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXPT010000022.1 Clostridium sp. YB-6 NODE_22_length_29254_cov_117.285910, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =========================================== ================== 27737 23 100.0 42 ....................... AATAAACCTAGAACTTATGCCAAGAAAGAATATTCTAGTGCA 27802 23 100.0 43 ....................... AATAAATATAGTATTCATTTACTAAACCCCCTTAGTACTAAAA 27868 23 100.0 43 ....................... AATAAACGAGTATGATATCAACAATGATAGAGAAGAAAGTAAG 27934 23 95.7 43 .....C................. TTAAATCCCACATTTTCATGTCATTCTAATGGTTAATCCTAGG 28000 23 91.3 43 .....C........A........ TTAAATCCAGTATAGGTATATCTAAGTTACTCAATATATTGGG 28066 23 91.3 0 .....C........A........ | ========== ====== ====== ====== ======================= =========================================== ================== 6 23 96.4 43 TTTAATCTTAACATGGGATGTAT # Left flank : AATATAACAATAACAGATATTAGACCAGGATTAGTAGATACAGATATGGCTAAAGGAGAAGGATTATTTTGGGTCCAACCCCTTGAAAAAGCATCATATCAAATATATGAGAAAATAAAACAAAAAAAGAAGATAGCATATGTAACTAAAAGATGGGGAGTTATGGCGTTTATTTTAAAACATATGCCTGATAGAATTTATTCTAAGTTATAAAAATAAATAACAGAGTGTAAAATCGCATTATTCAAAGAATTGGATCTGCGATTTTATTATTCAATACTAAGAAGGTGTACTTGGTTAACTAGAATATTAAACATTATATTTTACCAGCTATGAATTTATATAAAACTCCTTAATCTATTGAAATTACAGGGATAAAGTGGATTTTTTAAAATTTTTCTTAGAATTTTACAATCGCCTGGTAAAGTTTCCTTGAAACCTTGAAGTTTCAATGCCTTAGTGATATTATTGATTTTAGAGAATCGCTATTTTACTATAGA # Right flank : TTTAAATTGAAAAAGTTATTTGAATTAAATAATGGTAATTTATATAAAAAAGGAATAGATTATTTATAGTAAAACACCTTTAAGTAGTGCGGAATACGTAATTCAATATTTAGAATTAAACCTAAAGAAATAGAAAATTTATAGTCAGCGGAGCTATTCTTTAAATTAACTGGAGTTAAAATATGTAAATGCGGGGTAGAATTACTATGTTAATTAGTTCAGTAACAACAATATATTTTTCACCGACAGGTACAACTAAAAAAATTATTACTTCAATTGTAAAAGGAATGGGAATAGTTAATAATAAAAAAATTGATTTAACCTTACCCAAAATAAGAGAAGCAAGTGCTCCACTAATTGATGGGGATATAGTGTTAATTGGAGTGCCTGTTTATGAAGAAAAAATTCCTGAAGTAGTATATGACTTTTTAGAAAACTTAAAAGGCACTGGAAATCCAGTTGTACTTGTTGGTGTTTATGGAAATATTGGTGAGGGTATA # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTAATCTTAACATGGGATGTAT # Alternate repeat : TTTAACCTTAACATAGGATGTAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 274560-272953 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXPT010000003.1 Clostridium sp. YB-6 NODE_3_length_393223_cov_135.195378, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 274559 30 100.0 34 .............................. TTATTTACCATAGCTATATCTACAGACACAATTC 274495 30 100.0 36 .............................. CAATTCCAACATGGTTCTTGTAAAGTTCTTGCTTCT 274429 30 100.0 36 .............................. TTTTCATCTACTGAAACTTCTGCATTTGCAAACTTG 274363 30 100.0 35 .............................. AATTTTTTTAGAACATTTACTGATAGTAGTGGTAA 274298 30 100.0 36 .............................. AGAAGTTATATAACCGAATGTGGAAAAAAACTATTG 274232 30 100.0 37 .............................. GAGACAAATTCATCTCCTACTTATCGTCCTTATGTTA 274165 30 100.0 36 .............................. GGCTTATTTTTTCTTTATTAATTATTCTTAACTTCT 274099 30 100.0 36 .............................. TTTGACAAAGCTTGGCAAACTAATGGTGAAACAATA 274033 30 100.0 36 .............................. CCGATTGGTTTAGCAGTTGTTGCTATAGCAGCTATA 273967 30 100.0 36 .............................. TATCTTTTTTATTTTTAACATGCATTATGTTTTGCA 273901 30 100.0 35 .............................. GGTGATTGTAAAGCTAAAAAAGAATATAACTATAA 273836 30 100.0 35 .............................. AGATATTGATGCAATAATTGCTGAAGCGACTCAAG 273771 30 100.0 36 .............................. GATTATCCTAAGATAGATGTTGCTGTTAAAGTATTT 273705 30 100.0 37 .............................. AGTTACTGGTAAAAAGTTTTTTACTTATTCAAAAAAA 273638 30 100.0 35 .............................. CCTTGATAAATATTAAGAATATAACTTGTACCCTT 273573 30 100.0 36 .............................. TTTTTATCCTTGTCATATTGCAAATAACCACCCTTT 273507 30 100.0 36 .............................. TAGAGTATGACTATAAAAATAAAAAAGGTGAGATTA 273441 30 100.0 36 .............................. GCTTAATGGTTTTGTTACTGGAGGACAAACCATTAC 273375 30 100.0 35 .............................. TTACCCAACCCCATAAGCCTTATATACTCCTTTAA 273310 30 100.0 36 .............................. GTTCTTCATCCTGTAGTAGCTTTTTAAACTTTAGAT 273244 30 100.0 34 .............................. AATATAATTGATGATATGTTAGAACAGGCATCAA 273180 30 100.0 37 .............................. ATTACAGTTAAAGGTGTTTCATAACAATATGTTTTAA 273113 30 100.0 36 .............................. TTTTTTTCCAACCTCCTTACTTCTATTATATGTTAG 273047 30 100.0 35 .............................. TAGAATTAATACTTTTTATTTTGTTTAAATCTTAA 272982 30 96.7 0 .G............................ | ========== ====== ====== ====== ============================== ===================================== ================== 25 30 99.9 36 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : TCCATTAGGATTTTTCTTATATATGCCATATAGTCCTATGGTAGCACTTGGACAAAAGTATCTTCCAAATCATGTTGGACTAGCTTCAGGAGTAACAATGGGGTTAGGAGTAACAATGGGTGGAATTATATCTCCAATACTTGGATGGGTTTCAGATAATTATGGAATACATACTGCGTTAAGTGCTTTAATAATAATGCCAATATTTGCAGTAGTCTTAGCAAGAAAGTTACCTATACCTAATGAGGATATAAACAATAAAGGAAAAGAAGGGAAAAGAATAGTAAATATTAAAAAGATATCAAACGAAAGCTTATAATATATTTTTACCAGGTGATTGATTCAATAGAAGTACTCTAAAACTAGGTAAATAAACGGTTTAGTTGAGTTTTAAAACAATTAAGTCAATAGTTTAAAATCACTTGGTAAAATTTTTGTAATGTGTTAGTATTACTGTATTAGAGAAATTTTAACATTTTAAGAATGGCTTATTTTCAATG # Right flank : TTTCCTATATGAAAAGTTAACTATAATAAGTATAAAAGATATTTTAGAAAAGAATTAAGCTAAACTTTAAAATTTAGTAAAATTGTGATATAATTAGCATGGTTATAATATTTCCTATAAAGCTATATGTAGTTAATTTTATTAATATATAGTTTTATAGGAAATATTTTTGTTAGAGATTTATTTTATTAATAAATACCAAGGCATTATATTAAATAAAAAAACAGTAAGGATGTATGATATATGAATAAATTTATTATAACAACTGATACAACAGCAGATTTACCGAAGAGCTATTTACAAGAGAATAATATAGGACTATTAGCAATGTCTTTTCAAATGGAAGGTAAGGAATACTCAGGAGATGAAGACTTAGATATAAAAGATTTTTATGATAAAATGCGTTCGGGATTAATGCCAACAACAGCACAAGTTAATCCTGAGCAAGCAAGAATAAAGTTTGAAGGATATTTAAAAGAAGGATATGATGTTCTACATAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 374028-373134 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXPT010000003.1 Clostridium sp. YB-6 NODE_3_length_393223_cov_135.195378, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 374027 36 100.0 30 .................................... AAAGTTTAGTATTTGCAATAGAAAAGAATG 373961 36 100.0 30 .................................... TTCTTTATGTTCTTTAATACCTAAAGCATC 373895 36 100.0 30 .................................... ATACAGAATAAAAATAAGCGAAAGTCAAAT 373829 36 100.0 30 .................................... CAACAGGAAGTACAGGAAACTGCTACTTCC 373763 36 100.0 30 .................................... ACATTTACTTGTTTGCGGTCTTAGTGGACA 373697 36 100.0 30 .................................... TTGCAATATCACAAAACCATATATCATCAC 373631 36 100.0 30 .................................... AAGAAACAATGGAGTTATTATTTAATCTTA 373565 36 100.0 30 .................................... CAACAGGAAGTACAGGAAACTGCTACTTCC 373499 36 100.0 30 .................................... ACATTTACTTGTTTGCGGTCTTAGTGGACA 373433 36 100.0 30 .................................... TTGCAATATCACAAAACCATATATCATCAC 373367 36 100.0 30 .................................... AAGAAACAATGGAGTTATTATTTAATCTTA 373301 36 100.0 30 .................................... CAGACCTATTAGTTAGAACATTACAAAGAA 373235 36 100.0 30 .................................... TATAAATGAAGCTGTAATACATGTACTAGA 373169 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.8 30 GTTTTAGAGCTGTGTTAAATTGAATGGTATTAAAAC # Left flank : ATAGAAAAAGAATATAAGTTTAATTATGAAGATGAAACAATAATAAGTTTGCAAAAGCCTTTAATTAAAAGTGTTAGAGATATTTTAATAGAATATGATTACGAATTAACACAAAAAGAGACAATAGAAATAAAAGACTTATTAAAAATAATGGATGTAAGATTTGATGTAAATTATTATGATAAACCTTTAGAAAATGTATTTCTATTAATCGATTTAATAGCTAATTTTAAAATATGTAAAGTATTAATTTTTGTTAATGCAAAATGTTTTTTTACACAAGAAGAATTAGTAGAAATTTATAAAATGATAGTTTATAAAAGGATAAATGTACTTTTTGTTGAATATTATAAAGGGGAAAGTAATAAAGCTTATGAAAATAAGGTTTTAATTGATGAAGATTTTGATGAATTTTATATAAATTAAATAATAGAATAAAAAAATATCATTCTTTTTTTCAAGAATTTGCTGTGATTCTATGCAATAAACTCAGATTTGAG # Right flank : TTTTCACCTTATTTTCTTAAGAATAGTGGTGTTCCAATAAAATAAGCATTAAATCTTGCAATGTCACAGGTAATTGACACTATAGAGGAATAGAAAGCCACACTGATTCCAAAGGATGGGATTGGGAGTGGCTTTTGTATTAAATTTGTTTGAACTCTTCTTAATAATGATTTAAAATGAGAATATAATTAGGATGTGAAGAAGGTGAACTAATGAAACCTATAAACTATGAAGATTTAATTATGAAAAGAGCAATGGATCTTTTTGCAGAAGAAGGATTAAAATTCTTTGGAATAAATCAAAAAGTTAAGGAACTTGGGCCAACAGAATTAGTAGTTTTAGAAACTAAAAATATGTTTATGGATTATACTTTTCTTATGGAAGATGATACTTTTATACATTTTGAGTTTCAAACAACTAATAAAGGGAAAATGGATTTAAGAAGGTTTAGAGCTTATGAAGCGTTATTAAGTCATCAGACAGGAAAAGATGTAATTACA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTAAATTGAATGGTATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //