Array 1 100756-99629 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGEA01000008.1 Escherichia coli strain NS-P032 sequence008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 100755 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 100694 29 100.0 32 ............................. ATATTCAGTCTAATGAAGCGCCATAATATTGC 100633 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 100572 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 100511 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 100450 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 100389 29 100.0 32 ............................. GCCGTCATTGCCCGTTGAGATACCGCCCGGAT 100328 29 100.0 32 ............................. GCAAGGCGAGCTATCGCGAAATCGCAGCCCGC 100267 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 100206 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 100145 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 100084 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 100023 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 99962 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 99901 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 99840 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 99779 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 99718 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 99657 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 117533-116161 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGEA01000008.1 Escherichia coli strain NS-P032 sequence008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 117532 29 100.0 33 ............................. GATTACGATTGCGTTAATTTGAAAAAACGCGAC 117470 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 117409 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 117348 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 117287 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 117226 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 117165 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 117104 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 117043 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 116982 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 116921 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 116860 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 116799 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 116738 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 116677 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 116616 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 116555 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 116494 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 116433 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 116372 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 116311 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 116250 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 116189 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTATTATGTTCCCTGCATCAGCGGGGATAAACCGGACTTGTTATCATTTTTTAAGTTGTCGAACTTATGTTCCCCGCGTCAGCGGGGATAACCATTCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //