Array 1 64513-64249 **** Predicted by CRISPRDetect 2.4 *** >NZ_CBXV010000002.1 Pyrinomonas methylaliphatogenes strain K22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64512 29 100.0 32 ............................. GTCATCCGTGATCTTATCCGCGTCGCCAATTG 64451 29 100.0 32 ............................. GCCACCGGATCGATGCCCGGATCGCGGCTATC 64390 29 96.6 32 ..........A.................. TTCGGTCATAACGCGAGTCTCAAGGCGCGATG 64329 29 93.1 23 ..........A.....G............ GCGCGCGCAGTCGCCGAACGTGA 64277 29 82.8 0 G........AC.....G..C......... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 94.5 30 CCTTCGATCCTCAGATACGTGGAGTTGAC # Left flank : CGTAAAGCGCTTCGTGTACGAATAAAAGAGCACGCTCGCGAGCGCCAGGGGCGCAAGCAGCAGCGTCAAACGGTTGAGCATCGCCGCCGCCAGCAGGAAGAGCGCGGCAGAAGCGATCGTAAAGGCGCGCGCGAAACGGAGCGAGACGCGCCCGGTCGGCAATTCGCGCATGCGCGTGCGCGGATTCTGCGCATCGAACTCGCGATCGACGATGCGATTGAAGGCCATCGCGCAAGAGCGCGCTCCGACCATCGCCAGCGTGATCCAGACGATTTGCCGTGCGGTGGGCCAGCCATTAGCTGCCAGCACGGCCCCCAAGAAAGCGAACGGCAACGCGAAGAGCGTATGCTCGATTTTGATCATCGAGAGCGTCGTCCGCAGGTTGTTGGCTAAAGAGATCATCATCGAGAAACTCGGGTCCGATCCGAAGCGATTATTTTCGCCGATCGGAACGCCAAAAGCAAAGTTCAACTTCGCCCATGGCCGATTTGATAGCGAAC # Right flank : GACGAGCTTTGGCGCGGCAGGTTTTCGGTGTTATACTTTGCTCGATTATCGAAGAAAGTCTCCGCTTCGCATTCTTTAAGGACTTCTGCGGCCCGTCGGGGCCGCCCGAAGAGCGCGGATGATCGCAGCCTTTTTGCTCATCTCGATCGCGATCGTCGCCCCTCAGCAGGGAGGCGAGATCGCGCGGCAGGTTGAAAACGACATCGCGCGCGGAGTCGAATTGCAGCAGAAGGGCGATCTGGAGGGCGCGCGGGCCGCTTATGAGAACGCCTTACGACTCGCGCCGCGGCGCGTCGAAGCGTTATCCAATCTTGGCGTCGTCTATGCGCGGCTTGGGCGTTACGATCAAGCGATCAAGCTTTACAAGGAGGCTTTGACGGTTGCGCCGACGCAGCACGCCGTCCGTTTGAACCTCGGGATCGCGTACTTTCAGACGGAGCAGTTCGATCTCGCTCGCCAAGAATTGGCGCAAGTGGTGGCCGTGCAGCCGAACAACTACC # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.16, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCGATCCTCAGATACGTGGAGTTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 97399-97220 **** Predicted by CRISPRDetect 2.4 *** >NZ_CBXV010000002.1 Pyrinomonas methylaliphatogenes strain K22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 97398 35 100.0 37 ................................... GAGATGCCAATGCCGATGCGATGATGCGATGATGCGG 97326 35 97.1 37 .....G............................. GGAAGCGGTTACACGGTAGATCCGTTCTGGAGACCGT 97254 35 94.3 0 .............T...........T......... | ========== ====== ====== ====== =================================== ===================================== ================== 3 35 97.1 38 CGGTGATGATGCGCGAATCTCTATCCTCTGGCATC # Left flank : CATCTCGAGCGCTTCTTGCGCGTTGACGCGCCGCGCCGTCAGGATGATCTCGAACGCACGCGCTGGACCGACAAGACGCGGCAGGCGTTGCGTGCCGCCCCAGCCCGTGATGAGGCCGAGCGCGACGCCCGGATGGGCGAAGACTGCTCCCGGGCTGGCGATGCGCAGGTCGCAAGCGAGCGCTAAATCCAACCCGCCCCCCATGCAGTAGCCGTTGATCGCCGCGATGGTCACTTGCGGCGCATCCGCGATCCGTTGCATCAACCTTTGACCACGCAGGGCGAAATCGCGCGCCGCCGCTGGCGTCAAACCCACCAGCTCGCGCAGATCCGCGCCGGCGGAGAAAACATCATCCGTTCCGGTGAAGATGAGCGCGCGCACATCATGTCGCGGGATGAGCGCGGAAAGGATCGCGTCGAGGCGTGAGCGTACCTCTTCGGAAAGCACGTTCCGTTCGGCGGGACGGTTGAAGCGAATGATGGCAAAAGGTGGACTTAGCT # Right flank : TTCGCTCGATTGAAAGCTCGCTCAAAGAGCGCGAGCTTGCGGACTCGTCGGGAAAATCTTCGCTCGATTGAAAGTCGGGCGTCGGTTGTTCGCTCGGCGCCGCCTTTTCCGTCTCCATGAAGTCAGGTGCGCGGGCGGACGTTTTCGCGCAAGAACCTGATGATCTCTTCGGTCGAAGTGCCAGGCAAGAAGACTTCGGCGATGCCTTGCTCTTTGAGGCGCGGGATGTCCTCTTGCGGGATGATGCCGCCGACGATCACCAGACAGTCATGCATCCCGCGCTCGCGCAGCAGTTCGACGATGCGCGGGCACAAGGTGTTGTGCGCGCCGCTCAAGATCGAGATGCCGACGGCATCGACATCTTCCTGCGCCGCCGCCGCCGCGATCATCTCCGGCGTTTGGCGCAAGCCCGTGTAGATCACTTCCATGCCGGCATCGCGCAACGCGCGCGCGATCACCTTGGCCCCACGATCGTGCCCGTCGAGTCCGGGTTTAGCGAT # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGTGATGATGCGCGAATCTCTATCCTCTGGCATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 494-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_CBXV010000015.1 Pyrinomonas methylaliphatogenes strain K22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 493 30 100.0 36 .............................. CAGACCGAGTATGAAATCGGCCTTGTTCGCCCACGC 427 30 100.0 36 .............................. AACGCATAAGCAGCTCCTTCGAGCGGCGGCGTAGGC 361 30 100.0 36 .............................. TCGCAGTCCGATCTCTGTTTGTGATGGCGTTCGCTG 295 30 100.0 37 .............................. GCGGCGAAAGAGGAGCCGCCAGCGGCGAAAGAGGAGC 228 30 100.0 36 .............................. AAAATGTTAAGTTGCGGTGTCCCGTGTGTGGACCGC 162 30 100.0 36 .............................. GAGAGTTGGACCAGACCGATAATGAGGTGGACCAGA 96 30 100.0 37 .............................. GTTAACTGGTTAACGATTTTCTGGACCAGTCAGTCGG 29 29 96.7 0 .............................- | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 99.6 36 GTTTTAATCGGACCAGTGTGGGATTGAAAC # Left flank : AAGCGCGAACT # Right flank : A # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGGACCAGTGTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-8.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 572-78 **** Predicted by CRISPRDetect 2.4 *** >NZ_CBXV010000014.1 Pyrinomonas methylaliphatogenes strain K22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 571 30 100.0 36 .............................. ATCTCGAAGTTAGCCGGTCCGGCCGGTAACTCGCCT 505 30 100.0 36 .............................. CTGCTATATAGTCCGCGTATCAACCAGCTCGGCGGG 439 30 100.0 36 .............................. GAGGCAAGCGCGGTTGAAGAAAGGGGGGCCTAGCGC 373 30 100.0 38 .............................. CTGGTGGGCCAGAAAAGAGACGTGCTGGTCCAGAAACG 305 30 100.0 36 .............................. GCCCATCTCGGCGACGATTGGCACAAGCGCGAACTC 239 30 100.0 36 .............................. CAGACCGAGTATGAAATCGGCCTTGTTCGCCCACGC 173 30 100.0 36 .............................. AACGCATAAGCAGCTCCTTCGAGCGGCGGCGTAGGC 107 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 100.0 36 GTTTTAATCGGACCAGTGTGGGATTGAAAC # Left flank : CGTTGAGACGGGCGAGGA # Right flank : CTCGCAGGAAGGTGCATTCGCGTCCAGTCCTCTTGTTTAATCGGACCAGTGTGGATGAGGATATTGTTGTCTAACGGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGGACCAGTGTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 582587-580959 **** Predicted by CRISPRDetect 2.4 *** >NZ_CBXV010000004.1 Pyrinomonas methylaliphatogenes strain K22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 582586 36 100.0 36 .................................... ATCGTCTCCGCCGTTAAATTCTGCGGTAACTGGGCC 582514 36 100.0 37 .................................... GTTTGTAGACCGTGGTCGCCAACCCCAAGACCATGAA 582441 36 100.0 38 .................................... GGCGTACAAGACGAGCCGCCCTTGCAGGCGGACGAACT 582367 36 100.0 35 .................................... ATCTACGATCGCGCTGGCGGCGCCAATGCGCTCGA 582296 36 100.0 35 .................................... TTCTTCTCTTTTGGGGCGTACAAAGCAACTCCAAG 582225 36 100.0 37 .................................... CGCGCTTGGCTGAACGGATCAGAACTAAACCGCGATC 582152 36 100.0 37 .................................... AGCGGCATAACCTGCAAGCCGAAACTGGCGCGTTTGA 582079 36 100.0 36 .................................... GTCGGTTCGGCGCTCGGTCTAACCGGCTTTTTCCTG 582007 36 100.0 37 .................................... TGTGCCCACCGACTCATCATTGCCCAGATCCGGTATC 581934 36 100.0 37 .................................... ACTTGTGTTTGTGAATGAAGTCGAGAGAATCGAGGAG 581861 36 100.0 38 .................................... TTGCACTCTCAATTGCAGCCGATACTGCGACATGTCTG 581787 36 100.0 34 .................................... TCTCTTGCGCGCCGGTTTCGAGTGTCGGTGGGGG 581717 36 100.0 37 .................................... CCGGCGCGGTCGGCGTATGAGATCACGCACTCTTCAT 581644 36 100.0 36 .................................... ATTCGTGACCGGGTTTTGCCCAACGCCGCGCGCCTG 581572 36 100.0 35 .................................... CCCGTCGTCGTTTCTTGGATCGCGGCGTTCTAGCG 581501 36 100.0 37 .................................... GCCGTGTCCGATGTTGCTCAGTCCGCGCGTGCAATTG 581428 36 100.0 35 .................................... CCGCGTGTGAGCGCATCGAGCGCGCGCCGTTCGAC 581357 36 97.2 35 ...............T.................... CCCCACGCGGTGCATGCACTTTGTTCCGCGTGAGA 581286 36 100.0 37 .................................... GAAGAGGATTTCGATCCTGAACGGATCGCCCGCGCAT 581213 36 100.0 37 .................................... AGTATTACCCGCACTTGCCGTCCACGGATGAACCCGC 581140 36 100.0 35 .................................... ATGACGTGCGCGACATAACACGAAAAGCAGATCGC 581069 36 100.0 39 .................................... TCTCGCGATTAAATGAGCGTCAAGCGCTCGCGCTATTAC 580994 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 23 36 99.9 36 GTAACAAAGCCTGCTCAACGGCTTGGAAGTTGAGAC # Left flank : CTGAACGCGGCCCAGAACATCCGGGCCGAAGGGATGCGACATATCCCCGTCGCCGTGGGGCACACGGAGACGCTAAACGCTTGGGAAGAGGGCGTAAGACCTGCACATGGCGGGCAGTCCTCGTTGAACCAAGAATCCCACCGGCTTTAGCCGTGGGAGTGTCAATGATTTCAGCCTTTTTCAGTTCTTTTCTTTCAGTTTGGCCAACCCTGAAAGAACTTAGTCAGCATAGAAGAGTAAAAGTTGTACAGGATTGTTTTGGTGAGTGAGGCACGCAACAGACGCGCACGAGCCTTTTGTTTGATTACAGTCAACAGGTTTTGGAGTACAAGCGCCGTCGTAAAGCGCTCGCAACTGAGAAAATCTTTGAGAACTAGAAAGTTAGCATAGTTCGACGGGATGATGGAACGGTTGCAACCAACAACGCAATTCAGACAGTATCGAACCGCTCGCAAGGAGCGCACCAAACTCTTGACCAGAAAGGTGGTTCTGGTTATGCT # Right flank : ACGAGCGACCGGGTGCTCCAACGACTCTTCGATCACCACCGTTTTTGAAAGCATAGACATTTATCCACGACGTCAATCGAACGACTCTGCTGACGATTCGCGTTCGGGAATCTCACTCGAAACACCGATTTTTCATTTTGACCTTCTTCCTACGTGTTTACCTATAGGTCGTTTTGGTTTGTGGGTAGAAAGCAACCTTGCAGGGCGCGGAATCAGAGCGTGGAAGAGGAACGGATAAAGAGGGCGATATGTGGGAGAGATTGTTGATGCCAGACTTTACGTCCGATGGCGACGATACAAGCAGGTTGATCAGGTGGGTAGACAACAAAACAAGCTTCTCTGACGAAACCTGTTTGTGGGGCGATGCGTTGAAAAGCAGCGTGCCATCCGACGAGGCAGAGGCGTGAATTGGTTGGGAGGTTAGCGGCGGCGAGTTCAAGCAGAGCGGCAAGGCGTTTAAACTCGGAGACTGAAGTAGGATCAAGGCGCAGGAAATCGAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAAAGCCTGCTCAACGGCTTGGAAGTTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 215444-215233 **** Predicted by CRISPRDetect 2.4 *** >NZ_CBXV010000003.1 Pyrinomonas methylaliphatogenes strain K22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 215443 28 96.4 33 ..A......................... GTCAACGGCGCGCTTCGTTGTTTCGTAACAAGC 215382 28 96.4 33 ..A......................... GCGAATAGAAGTCGCCTTCATCCACCGCGATGA 215321 28 100.0 33 ............................ GGAGTTTGCGCCCGTGGCGGCGCTTGTCCGGGC 215260 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 98.2 33 GAGCATTCCGCACGCATATGGAGCGGTG # Left flank : GTCAAGTTTGGCCTCGTAATTATTGGCCGTGATATAGGTGATGTTGGCTTCAACCATGTAACGGCGACTTATCTCGACCGCTCGGGCCAGCGTTTCTGGAAGCGCAGCCGTTTGTGCGCGAGTTGATGAGAGTGGGAAGGATAAACTAAGCATCAGCAGGAGATGGAAACCTAGCTTTCGTGTCATACTCATCTTCGAGTCTCTTTGCTCCTCACGAGAAGTTTGTACGACGAACGGCCCGATCTTAATTCCGACCGCTCGAGAGTGGAAGGGGAAATCGGTCGTTTGTTGATGAGAGAAACAAAAATGGGGCGCGATTACCGCGCTCCGCGCGCGACTTTCGGCGGGACATACCAGCGGGCGCTTCGCGCGAGCGAGGATCTTTTACCGCGCTCCGTGCGCGACCCGCCTTATCTAAATCTGAAGCGCGGAGACGGTCAAAGTGCTGCCGCACCCTTAGACCGGCACATCGCCAGTCTGATGTCTTGTGCTCGAAGAGT # Right flank : CGGTGAGTTGAGCGGTTTGCGCAAACGCTCCGCGCGCGTAGGGAGATCGCGCTGCCGCCCGATGTAGCGAAGAGCGTCTTGAAAAACGCTCCGCGCGCGTAGGGAGATCGCGTTAGCAGAGAGGTTGAAGGGAATTGGTTTGACAAACGCTCCGCGCGCGTGGTTTCGCATAAATCGCTTTAATCTGAGGCTAAAGCGATTTGGGTGGAAATCCGAAAAAATGGATGAGCTTTTACATTTTTTCGGAAAAATGAGCCGCCTTGGGGAGCACGACCCTGCGAAAATAGCCGGAAAAAGCTGATCTCGCGGCATGGAACGGGGCTTGCCTTAGAAAAGAGCGGACGTTCCAAGCTGGAAGTCGGACGAGCCTCGTGGCTTTGGAGATCGAGCGGCAGCTCGACTCGTGACACAAGAAGAACTTGACCGGCTCATGTTCGGGGCAGCATACCTCGAGCATGAGCCTATCTTTAGTTGTGTCTAAGAGCAAATCGAGCCATCGC # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGCATTCCGCACGCATATGGAGCGGTG # Alternate repeat : GAACATTCCGCACGCATATGGAGCGGTG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 715-20 **** Predicted by CRISPRDetect 2.4 *** >NZ_CBXV010000005.1 Pyrinomonas methylaliphatogenes strain K22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 714 30 100.0 37 .............................. AGTCAGGGCGCTCTCAGACCGCATACCGTCTGGCCGA 647 30 100.0 38 .............................. TCGGACTCGAGCGCCTAATAGGCGCTCCTAACCAACAT 579 30 100.0 36 .............................. CTCGCCGGCGTCCACCCGCCACTGCAGGTGGATGAA 513 30 100.0 37 .............................. GACTTTATCGGTCGGGGGCAAGTAGGCGCGAAACATG 446 30 100.0 37 .............................. ACGTCAAGGCGCACGGGAACGCTCTCGTCAGACGCAA 379 30 100.0 35 .............................. TCGTTTCGATACGCGTAAAACCGCAGCCCTGGACG 314 30 100.0 37 .............................. TCGTTTCGATACGCGTAAAACCGCAGCCCTGGACGTA 247 30 100.0 36 .............................. GCGTCCGACTACATCATCGTCATCGTCATCAATTGG 181 30 100.0 36 .............................. GTGCTCGGGAAGGAACGCGTTGAGACGGGCGAGGAG 115 30 100.0 36 .............................. ATCTCGAAGTTAGCCGGTCCGGCCGGTAACTCGCCT 49 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 100.0 37 GTTTTAATCGGACCAGTGTGGGATTGAAAC # Left flank : TGTTCACTGGCGAGGTGGTTGAGGGCTCGCGCTGTCGTACAAGTTTGGGTGGGACGGTAGCCCTAAATGCATCGATTAAGATCGGGCACTGTACGATGAGTTGATCACGCTGCTAGGAAGACGGCAGCCCTAAATGCATTTAAGATTTCGAAGAGCTAGCCATATAGCCGTAGGGCAAATATCTGGTCCGGCTGTTGAGACTGCTGCTGCATCTGCGGCGGACTGGCATATAGCCATAGGGCAAACATTCTGCTGGAGATTAGCAGAGGTCTAGCCGATGATCGCGCGGACTGGTTATAGCCATATGGCAAACATCACACTTAAACCTAAAAATGTGTCGATTAAGATTGCGAGAACTCTACCCCTAAACCGACTTGTTTTTTGATAAACATTGCCACTTGCCGTCACTAAGCTAGGGATTGACATTTACCGATGTTCGACGGCAAAATATTCTTGGAGTTGATTGAAATATCAGTGTTTTTTGCAGAAATCCTAGGGGG # Right flank : CCTGCTATATAGTCCGCGTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGGACCAGTGTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 2 115270-118785 **** Predicted by CRISPRDetect 2.4 *** >NZ_CBXV010000005.1 Pyrinomonas methylaliphatogenes strain K22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 115270 35 100.0 36 ................................... GTGGTTACAGCACGCCTCACCACAACATGTTGTGGT 115341 35 100.0 38 ................................... GGTGCGATACAATCGAACAGAATGCGAATTGATGTCGC 115414 35 100.0 37 ................................... GAAGTTCGATTCCGCTTGGATTTGAGCTTGCGCCCAA 115486 35 100.0 38 ................................... GTAAACGCGCGCCGTCACGTTACGTCGCCGACGCCAGC 115559 35 100.0 38 ................................... GCGTCCTCCCCAGAAAATGAACGACCTCACCCCTCGAG 115632 35 100.0 37 ................................... GCGCTTGATTGCGATCGACGAGCCAGACGCATGCGTC 115704 35 100.0 37 ................................... GTCGGTAAACAGGTTTTAGGTCAACTACTCGGGCGCA 115776 35 100.0 37 ................................... GAATTCCGGGGCTTCCCCGCGGCGATCATGCACGATC 115848 35 100.0 38 ................................... GTTTCGCAGCGGTTCGGCTTCGGGGTAGATTATGACCA 115921 35 100.0 39 ................................... GCTCGAGCGCATCATCGCGAAGAACAAAAGCGGTATCAA 115995 35 100.0 36 ................................... GGTTCGAAATGAACGACACTTTCAGCGATCGTGTTT 116066 35 100.0 36 ................................... GTGGGCTGAGGTCGCAGTCCTTGGCGAGGCGTTCGA 116137 35 100.0 40 ................................... GGGCTATCAGCGCGATGATATCGGGGATCGCTCTCACCAA 116212 35 100.0 37 ................................... GCCGTTTCAGCCGCCGCTCCAACTCCCTGTCCGCGCG 116284 35 100.0 38 ................................... GAGGATCGTACACGGTAGATCCGTTTTGGCGAGCTCCT 116357 35 100.0 39 ................................... GCGTGCTACTAGTTCCAGAGCGACGCGCAACGATCGCGC 116431 35 100.0 38 ................................... GGGGATCGGCTACTGCATAGAGAGCCGAACCGCAGCGC 116504 35 100.0 37 ................................... GGATGATGGCCGCGATGTGTTCGCGGCCAATCATCCA 116576 35 100.0 40 ................................... GTCGTCGAGACGCTTGACGCGATAATCGTATTTTCCACTG 116651 35 100.0 37 ................................... GGCCTTCGCGCGCGCCCCACGGTTTGGGCCAGTTTCC 116723 35 100.0 37 ................................... GAGCAAGCTTTGCTACCGTAGAGCGGGTCTCAACTAC 116795 35 100.0 38 ................................... GGATCTGGTCCGGTTTGGTGCGAGCGATCCCCGATATC 116868 35 100.0 39 ................................... GATCACATATCACACCTACGCTGAATGCCCGCACGGTCG 116942 35 100.0 38 ................................... GGTCTGCGACGAGCAGCTCGGAGCCGGTCGTTTGGACC 117015 35 100.0 36 ................................... GTCGATGACAAATCGGGCAATGCGCATCCAACACTC 117086 35 100.0 38 ................................... GCCACGCCTCCGTCGAGCACGCGCCCGCCGCTCGATAC 117159 35 100.0 37 ................................... GGTCGCGGCGTTGCTCAGAAGTATCGGGCACATGGTC 117231 35 100.0 39 ................................... GCTGGCAAAACACGATCTCACCGCTCTTACGTTCAATGC 117305 35 100.0 39 ................................... GGCTATCTCGATCTATCGCGCTTGTGCCCGTCACGCGAA 117379 35 100.0 37 ................................... GCGCCGGAAATTCCGCGCTTGCGCATCCCATATACTG 117451 35 100.0 37 ................................... GTCGCCAAGCCTTTTCCAACGAAAGAGGTCTTGGCGA 117523 35 100.0 37 ................................... GCAGTCGCTCGGTCGCGTCCTGTTGCAGGTGCGGCAG 117595 35 100.0 38 ................................... GAATTCTCCGGTCTACACTCCGGATGAATTAGGGGCTG 117668 35 100.0 36 ................................... GCTGGACAGCTGGACCAGCGAGCGGCCATCTCAGAA 117739 35 100.0 36 ................................... GGTAAATGCGCGACGCGATGCGCGACATCAATTCGC 117810 35 100.0 37 ................................... GATATGGGGCGCGAGCGTGCGCGACCTGACTGAGCAT 117882 35 100.0 37 ................................... CCTCGTTGGGATGGAAACGATAGGCGGCGGGAGAGCA 117954 35 100.0 37 ................................... CTCGCATCCATTACGGAGCGGTTAATTAGCAGGCGGG 118026 35 100.0 38 ................................... CCTCAATGCGATCATCCCTAACACGATCAACAAACCGA 118099 35 100.0 37 ................................... CACGATCCCCCGCGGTAGCGAAACGCAAGTCGTCAAC 118171 35 100.0 38 ................................... CGTAGGCATTCGTGCCCCCCATACAGGAAAAGTCGCTT 118244 35 100.0 37 ................................... CAAGCCCGCCTTGGCATAGATCTGACCCGCCTTGGCA 118316 35 100.0 37 ................................... CATCCGTGACGCGATAGAGTTTCGCCGGCCCAAGCCG 118388 35 100.0 38 ................................... CCTGCAACGGGAAAAAACTGGAACGAAAAGACGCGAAA 118461 35 100.0 39 ................................... CTTGAACTGTTTCTGTCAGACGCTCATTTCCCCTATGAG 118535 35 100.0 38 ................................... CGCTTGAATTTGGGCTTGCGCCCAATCAGGATCGATAC 118608 35 100.0 35 ................................... CATCGAGGCGTTTGGTTGAATATCAGCGATGAGCT 118678 35 100.0 38 ................................... CGGCGCGTAGGGCAGTGCGTAGCGGATGGATCAGAGTG 118751 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 49 35 100.0 38 ATTTCCACGTCCGAATAGACGTGGCCCCATTGAAG # Left flank : TTAGTGCGCAATCGTTACATTGTCAGTTACGACATCTCCGATCCGCGACGTTGGCGGCGCGTTTATCGCACCATGCGCGGATATGGCGATCCGATTCAATACTCTGTCTTCCAATGCGATCTCCTGCCAGCCGAGCGTATTATGATGATCGAGGCGCTGACAGGTATCATAGATCACCGTGAGGATCGCGTCATGTTGATAGATGTTGGTCCAGCCGACGGGCGTGGCCGGTGGAGCATCGAAACATTGGGACGTGCGATCAAGCATGAAGAAAGGATCGCCATTATAGTTTAAGGTCGGGAAAGGCTGCATTCGTACTACTTGCGAGCGCTGAGATGATGCAGCCAACGCGGGGATGCGCTCGAAGGCAATAAGTTCAACGTCTACAAGAAAATGACTTGCCAAACAACACTTATCAAAGTAAAATCTGCCGCAGGGAAGATGACCGCTCGCAGCAGGCGGGATAAAAGTCTCTTTGACAATCTGTTGCGGAAGATGCT # Right flank : GGGCTTCTGTCCGCGAAGAGTTTTGGCGGCGCGCGGTCTACAACAGTGCGCCTTATCGGCGTTTGCGAGAGATCGCCGCCCTGCCTATTAGGGCAGAGGTACGCAAGGGCGGGCCGTTCTCCAACGTGATGTCGTCCTCGCTCCAAAAATTTGTTCAATATCTGCTCTCTAAGGAGGAGTTGTGGGCGCGTTCCTACGCCCAATATATCGCCACGCTGTCGGGGAGCCAGAAAATGCTCGACGACTTAAATAGAACCCGTCGTCAACCGTGGGGGACGGTTTTGCAATGGAATGACGAGGACTTTCAACCTAGTAATGGAAGAAATAGACCGACAGAAAGAAGCTACGGAAGCTACAACTTTCAACCTAGTAATGGAAGAAATAGACCACGGACGACGCGGGCGCGTTTCGCCAGTGGTGGGCCGAATTTTCAACCTATAGTGGAAGAAATATCGTGCGCCAAGATTCAATAACCGCACTCGACCGCCCGAATTTTCAAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCACGTCCGAATAGACGTGGCCCCATTGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 3 119087-119368 **** Predicted by CRISPRDetect 2.4 *** >NZ_CBXV010000005.1 Pyrinomonas methylaliphatogenes strain K22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================ ================== 119087 24 100.0 32 ........................ GACCGACAGAAAGAAGCTACGGAAGCTACAAC G [119095] 119144 24 100.0 44 ........................ GACCACGGACGACGCGGGCGCGTTTCGCCAGTGGTGGGCCGAAT G [119151] 119213 24 95.8 41 ............G........... TCGTGCGCCAAGATTCAATAACCGCACTCGACCGCCCGAAT 119278 24 100.0 43 ........................ GCCATGGGAGAAAAAGCGGATCTTGAAAAGCATCGGGCCGAAT 119345 24 91.7 0 .................G.....G | ========== ====== ====== ====== ======================== ============================================ ================== 5 24 97.5 40 TTTCAACCTATAATGGAAGAAATA # Left flank : GCGCCCAATCAGGATCGATACATTTCCACGTCCGAATAGACGTGGCCCCATTGAAGCATCGAGGCGTTTGGTTGAATATCAGCGATGAGCTATTTCCACGTCCGAATAGACGTGGCCCCATTGAAGCGGCGCGTAGGGCAGTGCGTAGCGGATGGATCAGAGTGATTTCCACGTCCGAATAGACGTGGCCCCATTGAAGGGCTTCTGTCCGCGAAGAGTTTTGGCGGCGCGCGGTCTACAACAGTGCGCCTTATCGGCGTTTGCGAGAGATCGCCGCCCTGCCTATTAGGGCAGAGGTACGCAAGGGCGGGCCGTTCTCCAACGTGATGTCGTCCTCGCTCCAAAAATTTGTTCAATATCTGCTCTCTAAGGAGGAGTTGTGGGCGCGTTCCTACGCCCAATATATCGCCACGCTGTCGGGGAGCCAGAAAATGCTCGACGACTTAAATAGAACCCGTCGTCAACCGTGGGGGACGGTTTTGCAATGGAATGACGAGGAC # Right flank : GGACCGGTTGTTCGCCTCGATGGGCTGGTTATGAACAAAGAACACGAAGAACGCATCGCCAAAATCCTTGCTGTGCATAAGGACGATCCACTGATCCCCCTGGTCAAAAAGGCTCTGGATAACCAACCTCCGTTTTCGTTCCAAGACCAGGAGACTCATCAACGGTACGTGGATGCTCTTCTAGGTCTACTCGAAGCTGGCTTCGACCCTCAGACCGCGCTCGAAGGGGCCGCCGTGGTCACTGGTCTGATCCCACCTGGCGCCGTAATCTGAAGAAAAATAAATCCGCAAAACCGATAATCTTGTCCATTGAGCCAAGGCTGGACCTTGAGAGGGCAAGATGCTGGAAGAATTACCCGCTAACGCCGAAACGCCGGAGACTGAGTGAAATGCCAGGCAGATGTCGGAGACTGGGCAAGGTTCAGTGGTGCGGGGATTAGCGGCGATCTTCTCTCAGCGAAATGCCAGGCAGATGTCGGAGACTGGGCAAGGGGGCGTGT # Questionable array : NO Score: 2.94 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCAACCTATAATGGAAGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 55778-55932 **** Predicted by CRISPRDetect 2.4 *** >NZ_CBXV010000009.1 Pyrinomonas methylaliphatogenes strain K22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =========================================== ================== 55778 23 100.0 43 ....................... GAGGACTGGACGCGAATGCACCTTCCTCACGAAGGTTTCAATC 55844 23 100.0 43 ....................... TGAGGCCATCATTTTGGGTCTTCCCGTCTCCTACGTTTCAATC 55910 23 91.3 0 .....................CC | ========== ====== ====== ====== ======================= =========================================== ================== 3 23 97.1 44 CCACACTGGTCCGATTAAAACAA # Left flank : ATGTATATCGTAGTTGTCTACGACGTCGAGCAGGGACGTGTCAATAGGGTGTGCCAACTGCTGCGGCGGTATTTGCATTGGGTGCAGAATTCCGCGTTCGAAGGGGAACTGAGTGAGGCGCAATTGGAAAGGCTCAAAAGCGAGCTGAGTGAGATCATCGATCGAGAGAAAGATTCAGCCTATTTCTACGTACTCGAAGATGTCCGATGGCTGAGGAAAGAGGTTTTGGGGAGAAACAGAGGATCGATAGATAATCTGCTTTAACTGAGCAAGGATCTCTGTCTTAGGAAAGAGGATCGGACTTCAGCTCCATCGATCTGGCGAAGTCCAAAAGGGGCTCAGTCCTTGGAAGGGTAATCATGCCGTTCTATCAAACCTGCTTGGCAAAATATAATTCATTTAGTATTGCATGATGTGACGCCAGTAAGTGTGTTTCTCATTATGAGCCGCTAGAAGCTAGTTCATATTAAAACTAGACCGTTAGACAACAATATCCTCAT # Right flank : GACTGACTGGTCCAGAAAAT # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCACACTGGTCCGATTAAAACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //