Array 1 1-1040 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL405232.1 Bifidobacterium dentium ATCC 27679 SCAFFOLD8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================================================================= ================== 1 35 97.2 35 -................................... TCGCCGCCGTGGAGCTGCTGAAGGAGCAAGGGCCC 71 36 100.0 36 .................................... GCTACGAAGAGCAGTGTCGAGCAGACGGCTTCGGAG 143 36 100.0 36 .................................... ATCCATTCGCTCGATTCGATTCCCGCCTATCAGGCG 215 36 100.0 36 .................................... CCGCACATTGCGCCTTAAGCGCCGGAAGCAGGACAG 287 36 100.0 34 .................................... AGCGGCAGCACCACCAACAAGAGCAGCGCCGAAC 357 36 100.0 36 .................................... CGCGACGTCGTCGAATGGGGCAGCGCGGCGCAGCGT 429 36 100.0 38 .................................... CTGGCGCAGACCGGCAAGGACGCCGAGAAACATTTCAA 503 36 100.0 35 .................................... AAGGACTAGGCATGAAGGACGTGCTTGACCCTCAG 574 36 100.0 39 .................................... TGATCGGCACATGCCCACACTGCGCACGCCAGTTGCAAG 649 36 100.0 35 .................................... GTGAAATATGTGTGGCGACATTACGTCACCCGCGA 720 36 100.0 38 .................................... CGGCCCGTCTTCAATGACACCGTGCGGACAGGGATCTA 794 36 94.4 35 ........................A..........C AAACTGCATACCAGCTGCATATGAAGTGCGTATAG 865 36 80.6 103 ....T..GA..A.....T.....CT........... ACGTATTTCCTGTTCATGGGCACCCTGAACTAGATGTTTCTGAACGGCAATGCTCAGGTTTTCTGGGACCGACCGGCGTGCAGATTGCGTGCGTCGTGGTCAA 1004 36 83.3 0 ...........T.GT........CT.........A. | C [1006] ========== ====== ====== ====== ==================================== ======================================================================================================= ================== 14 36 96.8 41 ATTCCTGAGCAGTAATGCTCAGGACTTCATTGAGGA # Left flank : | # Right flank : CGAGGCCACAGTTGATGAGGATGCTTCACATTCGGATTCAGTGGGCTCGTCATGCTGTGCTAGCACTGGATGCATCCCATAAATTGGAGTGCCTCATCCAGTTGAGCGGTTAAATCTCCGTCCAGCTCAGCAAAGAGACAAACCTCGATAAAGGCTGCAGGGCGATTAACGCGGCGTACTCTTCGTGGAGTGCATCAATGCGGCAGACAGGCATTTTCATGCCTCGAGGTTGTTCATTTAACCAATTCAGCCAGAATTACACAAACGCAGAGCTCACCCATGCCTCGTCTTGAAACACTCTTCGTCACCATTAATACCTAG # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.45, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTGAGCAGTAATGCTCAGGACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 342653-344266 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL405225.1 Bifidobacterium dentium ATCC 27679 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 342653 36 100.0 35 .................................... GTATCAGTTCACCCGCTTTGACCCGCAGGACAACC 342724 36 100.0 39 .................................... AATCAATTCCAATGGTTGAAGATCACGACGCCATCCCAA 342799 36 100.0 34 .................................... CGACTGTCTCGACTCACTGACCACGAGTAAGGTG 342869 36 100.0 34 .................................... GACACAAATCACGCGCACACACCGGCTCCAAACA 342939 36 100.0 35 .................................... CGGCCGGAGCGATGTGGTACTGTCTCACGACGGTT 343010 36 100.0 37 .................................... GACTGGACCACCATACCCGACACCATCAAAACAGCAT 343083 36 100.0 38 .................................... CAGCCGTCGGCTCACCAGACAACACGTCATCAGCCAAC 343157 36 100.0 37 .................................... AAGCAGATTGCGATGAGGTTGGCGAGTTCTTCCGTGG 343230 36 100.0 35 .................................... GCGCGCAAGGGCGGCTTCTACCGCGTGCATACCCC 343301 36 100.0 36 .................................... GTCGAACTACGCCAGGTGATGCTCGAGGACTCGGTA 343373 36 100.0 36 .................................... GGTCGGAAAGGGCGGTGACCTTTTCGTCGAGGGCGG 343445 36 100.0 36 .................................... ATGTAGACATAGGGGTCCCCGTCCTCACGTGCCTTC 343517 36 100.0 35 .................................... AGCAATGGACAGAATGGCGACGTAACTACAGGCAA 343588 36 100.0 37 .................................... GAGCGTGGACGAGGCGTTGAGGAATGCGCAGACGGGT 343661 36 100.0 35 .................................... TTGTGAGCGTCGCCGTTTTTCCCGTTTTCAGCCGC 343732 36 100.0 36 .................................... ACAGAAGGCTTTGACTTCGGCAAACGTAGCCAACTC 343804 36 100.0 35 .................................... GCACAACAAAGCGCGGATTGGAGTTTTCAAAAAAC 343875 36 100.0 35 .................................... CTATAACCAACCCACACCACAACAAGGAAAGGAAC 343946 36 100.0 36 .................................... CGTCGGATGCGTCATTGCGAATTGCAATCTTATAAG 344018 36 100.0 35 .................................... TTCCGTGAATTTCGCGTAGACGTTGGCGGCACCTA 344089 36 100.0 36 .................................... TATGAGCAGCTCCTACGAGAGTGGATCAACAGGAAC 344161 36 100.0 34 .................................... CCGAGGGTGTCGAGCATGGCCTTCAATGCGGCCA 344231 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 23 36 100.0 36 ATTCCTGAGCAGTAATGCTCAGGACTTCATTGAGGA # Left flank : CGCTTATGATATCAACGATGATCGCCGGCGTAGTCATGTGGCAAAAATACTGCAACGCTGCGGTGAACGATTGCAATACAGTGTGTTTTTGCTAAGAGTGCGTCCATCAAAGATGCTTCAGATTCAGAATCTGCTTGAGTGTGAAATTGATGGATCCTGTGATTCCGTGGTTGTTTGTTTCCTTGGGAAAGAGGAACAAGCGAAAGATGGGATGAACTTTCTTGGCAGGCGTGGGTATAACGATTTGGATATTCCTACTGTCATTTAGCGGTTTTATCACATATGGAAATGTTGTTTGAAAACTAAAGAGTGTGTCATGCTGATTCTTGATATGCGAGAGCTGAATCGGTGGAAATGTAAAGTGGTAGCGCTCGCACCATATAGGATAACGACTCATATGTGTTTGCATCGTAAATGATGGTTGTTCAAGTGTGTGACTACAGCGAGTTCTCGCAAACCTCTTGATTGAGCTAATCGATAGGCTGAGTTAGAATGAGGCC # Right flank : ACGCTTACAATGATTCGCAGACCGCGCTCACACAGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAAATACCATGTAGAACTTCATTGGGCTTGAATCATACGATGAAATGCACTCCCATCTGTTGAACGTTGTAAGTCAGGGCTCGATCACTAAGGTGCAAGGGATCATATCCGAGATTCCTTGGGGGTGTTCCTTTGAGTTTTCTTGGTTCTCCTACTTTCTGTCCATTCCCCAAAGCGCTCTTTCTGCACTTAATTCCGGCGTCGCCAGTTATGGCAATCCCAAACATGTACCGTGATTGTAAACAAGTACACGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTGAGCAGTAATGCTCAGGACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //