Array 1 101941-100508 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIDN01000019.1 Escherichia coli strain 57-K120-A entry19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 101940 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 101879 29 100.0 32 ............................. GCAAGGCGAGCTATCGCGAAATCGCAGCCCGC 101818 29 100.0 33 ............................. TCGTCGTTTATTATTGATGCTGATGTTTTTGCC 101756 29 100.0 32 ............................. GATACCGCGATTCATGCGACGATAAAAAATAC 101695 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 101634 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 101573 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 101512 29 100.0 32 ............................. GGGGATTCGCGTACCTGCGCGCCAGTTCCCCG 101451 29 100.0 32 ............................. ATCACTATCGTGATGCTGACGGCGCACAGCTC 101390 29 100.0 32 ............................. CCACCACCGCCCCGACACCACATATAGTAGCG 101329 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 101268 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 101207 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 101146 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 101085 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 101024 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 100963 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 100902 29 96.6 32 ............T................ CGTCACCACGCGCGCTACAGGTAATGCAGCTC 100841 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 100780 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 100719 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 100658 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 100597 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 100536 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 119058-117443 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIDN01000019.1 Escherichia coli strain 57-K120-A entry19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 119057 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 118996 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 118935 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 118874 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 118813 29 100.0 32 ............................. CCGGAGATCATCATATTCTGATACGTTCCGGT 118752 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 118691 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 118630 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 118569 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 118508 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 118447 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 118386 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 118325 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 118264 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 118203 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 118142 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 118081 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 118020 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 117959 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 117898 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 117837 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 117776 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 117715 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 117654 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 117593 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 117532 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 117471 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGATTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //