Array 1 19543-18253 **** Predicted by CRISPRDetect 2.4 *** >NZ_OADB01000029.1 Neisseria meningitidis strain Neisseria meningitidis isolate R892, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19542 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 19476 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 19410 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 19344 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 19278 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 19212 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 19146 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 19080 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 19014 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 18948 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 18882 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 18816 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 18750 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 18684 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 18618 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 18552 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 18486 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 18420 36 100.0 30 .................................... CAAAGCTGCGGTATGTCGGGATTGTCTTCA 18354 36 100.0 30 .................................... TCCACTATATAAATCCAGCACAAAACGGGA 18288 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //