Array 1 1218-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOCO01000007.1 Limosilactobacillus fermentum strain HPLD 27_S27_L001_R1_001__paired__contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1217 36 100.0 37 .................................... TCAATGTAGTCGTTGTCTTTGCACCACTGTAGAAAGT 1144 36 100.0 35 .................................... TTGTGTAACCTTGATAGCCATTTTTATTTTCTCCT 1073 36 100.0 38 .................................... CCGGTTTTTGCATCATAGTTATTAACCTTCATAGTCTT 999 36 100.0 36 .................................... TCTAATTTAATAGCAGGAGTTCCATCAACTTCAATC 927 36 100.0 33 .................................... CCTACAATCATATAAGGAACCTAACACAAACGC 858 36 100.0 34 .................................... AAGAACACCAGTGGCGAAGGCGGCTACCTGGTCT 788 36 100.0 37 .................................... CTCGAGTTAGTGTCAAATTCAAACAGCAAACTCTTAC 715 36 100.0 39 .................................... TTAAATTATTTTATCTTACTTGCTTACTCCCTTTTCCCT 640 36 100.0 35 .................................... AATAGCATTTTAGTTACCTCTTTCTTTTTATTTTC 569 36 100.0 39 .................................... TGAAAGCAAGTAAGAAACAAGTTGTTGATATGAGTATTA 494 36 100.0 36 .................................... ATATAAATCACCGTCCTTAATTTCAACATTAGGTAA 422 36 100.0 36 .................................... ATACTTTTATTGAATTTAGTTTAAATTAGTTACCAG 350 36 100.0 38 .................................... CCTTCATCTGACGCAATGAAAGAACGCTAGAGTCATTC 276 36 100.0 38 .................................... GTCGCACCTCTTTAACTAAGAAAATCGTTTTGAATCTC 202 36 100.0 34 .................................... AAAAACACCAGTGACGAAGGCGGCAACCTGGTCT 132 36 97.2 37 .................................C.. CTAGGGCTAGAGTACAATCCAAACAGCAAACCCATAC 59 36 72.2 0 ..C......CA.C..A.CA......AG........A | ========== ====== ====== ====== ==================================== ======================================= ================== 17 36 98.2 36 GATATAAACTGATCTCCGCCAGAAGGAGACGAAAAC # Left flank : AAACAGTTTTACGAACGGAATTATGCACCAACCTTCCTTTCTGCTTTTCCCTCTAAATACATTCAGGGGAATTACAAAGCACCCATATACCTCGGAGCGGGGAGCGGTCTATGGAGCAAAGTTGACCATCAACATGTTAATATTGAAGGGATTCGACGTCAAACTCCAAGAAAAATGAAGATGAAGTTTAATGGTGCCCTGAAGCTAACCAAGAGCCGGATAGTACGCTATAAGACTCCTAAAAAAGATGGCTTATTTGAACGACACGTTCTCATTATTAATAACGAAAATCTCTACGAAATGGGAAAATGTGGGTTCAAAATCAAGGAATTGTAATTTCAATTCTGAACTAGTTAAGTTATAATATGTAGAGTTAATATTCGAAATTGACAATGTCCAGAAAAAGGGCTAGAGAGGCTTGAATGAGCACCTACCTGGTCGAATTATGGGCATCAAAATGTCAAGTTATCCTTGATTTAGCAAGAAAGTTAGCAGGATCG # Right flank : AATAAAGACATATATATTACTGCC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACTGATCTCCGCCAGAAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 40-2326 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOCO01000058.1 Limosilactobacillus fermentum strain HPLD 27_S27_L001_R1_001__paired__contig_58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 40 29 82.8 32 ....A.....GT.......T........C GTTGTTTAGACAGTATCGATGACGTAGCTATG 101 29 96.6 34 ............................C TGCTTGGGTTTATGATGATGCTATGGGTTTGGGG 164 29 100.0 32 ............................. AACTTTGAGGTTGGTAGACGTTCAGGTTATAT 225 29 100.0 32 ............................. TAATATCAATGTATGAAGAAAGGTTAGCTTTG 286 29 100.0 32 ............................. CTTGTATATCTTTTAAAGACACCATTTTCACC 347 29 100.0 32 ............................. GCTAAAGGCTATGCAACGCAAGAGTACACGCA 408 29 100.0 32 ............................. AATCATATTCAAATTTCTGCAGATGATAAGAA 469 29 96.6 32 ............................C GTGGTTAGGTCAGTATCATTGACCATCTTAAG 530 29 96.6 32 ............................C TGAACACGTAATTAGACACCAACGCTTACATG 591 29 100.0 32 ............................. TATCGGGGCATCAAGGCGACGCTGGTCGGATT 652 29 100.0 32 ............................. AACCTTAAATTGGTGTAAGGATCTCCATGGTC 713 29 96.6 32 ............................C TACGGTATCGCTACCACTTGGATTTGCTGTTA 774 29 100.0 32 ............................. AACAATGCAACACCTAGCTTCATTCCAGCACG 835 29 100.0 32 ............................. TATCAGCTAATATGAGTGGTTATCAAATGTTA 896 29 96.6 32 ............................C GGCTTGGCAAATCCTAACGTCATCTACGTTGG 957 29 96.6 32 ............................C ACGGCGGACTTAACCACGCTCCTGGCGGGAAA 1018 29 96.6 32 ............................C ATGGACGGTCAAAAGCTAGTCCTTAAGGCCAA 1079 29 100.0 32 ............................. GATCAAAAGGTCGTGGATTATCTCAACGGCAT 1140 29 96.6 32 ............................C AGCAACACGGTTGATCACATCGTGCCGATCGA 1201 29 100.0 32 ............................. GTCCAAAAGCGCATGGATAAGATTAGGCAAGC 1262 29 100.0 32 ............................. AAGTCACCTACATACCAAGCTGGTTTTGGCTG 1323 29 96.6 32 ............................C AACTAGACCGTGCTGGCCTAGAGATGAATTAA 1384 29 96.6 32 ............................C GATAATTTCAAGTTGGCTAATGATACATTAGA 1445 29 100.0 32 ............................. CACTTCCTTTACCATATGAAAATTACCAGATG 1506 29 96.6 32 ............................C ATCGCCACACTTCAGGCTTCCGCCAAGACGCT 1567 29 96.6 32 ............................C GACAACGTTGGAAAGCTGTTGATCGTGTCTGT 1628 29 96.6 32 ............................C TTATATCGACCATAATGGGATTCACAACTACG 1689 29 100.0 32 ............................. AAACTTTATTAGCTTCGCTATCCTTAACACTA 1750 29 100.0 32 ............................. ACGTTGGGCATGTTGAGCGGCTTGCTTTTCTG 1811 29 96.6 32 ............................C CAAAGTTGTTCACTCCATACATCCACATCGCA 1872 29 100.0 32 ............................. ACTACAGGAAGTTTAATTGCTAGTTTTGTCGA 1933 29 100.0 32 ............................. GAAACCGAAATCTGATTAGCACTTGCCCCATA 1994 29 100.0 32 ............................. CTTCTCACCCTCGTCAAAGTCAGCATCATCGA 2055 29 96.6 32 ............................C TGGATCTATCCAGGCCAAGTGCTCAAGCTAAG 2116 29 100.0 32 ............................. TGTGCGTGTCCTGGTGAAGCTGCTTCCCGGTC 2177 29 96.6 32 ......A...................... TTCAATAAAAGTATTGACTTTAATCTAAAGTA 2238 29 93.1 32 .....................A......C ACCGTGCTCACCATTCTCGGTCTCTGCGGCTT 2299 28 86.2 0 .......TT.....C.......-...... | ========== ====== ====== ====== ============================= ================================== ================== 38 29 97.6 32 GTGCTCCCCATGTATATGGGGGTGATCCT # Left flank : GGATCCGAAGCATCTGTAGGTTTCGGGAGGTGTGATGAAG # Right flank : TCATCATCAGAAAGAGCCATAGTGGGCGAGATGTCTCTAGCATTCGAAGTGATGAAGGCGAAATTCTTTTCCCTCGTGGGACTCGATTCAAAGTTGTAAAATACTACCAAGATGAAAATGGTAAAAATATAATCGAGGTGGAAGAAGTTGAATAAAGAAGAGCGGTTAAAATGGCTCCGAGCCCGTGACCAACCCACTGCTGAACAATTAAGGTAATGGGTAAAAGACTTGCCGAAACAAGAAATAACTCCCGAAGAGCGAAAGAAAAGAGAGACTTTTAAAAAGGCCGCCAGTAAAATCCTTGAGGTTGATAAGCGTCACCAAGAGAGGCAATCATGGAATACAGAGAATTCATCCCACAAAAAAGGCTGACTATTGAAATTAATGGCCAGCCTTATGAAGAGATTAAGATTACAACCAAAGATACTCATGAGTTGGTTGTTCTATTTTCACCGGAGAAAGTTGTTTGGTCTAAAACATACAACGTTAGCTTTAAACGG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1359-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOCO01000081.1 Limosilactobacillus fermentum strain HPLD 27_S27_L001_R1_001__paired__contig_81, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1358 29 96.6 33 ............................A CTCGATGATCTAATCCAAGAGGTCGCCCAGAAA 1296 29 100.0 32 ............................. AACCGCCCCGCTTGGTACTGTGTATTTCGTAG 1235 29 100.0 32 ............................. TAATCAGGGCACGTGGGACGGTACAAGCGGAA 1174 29 96.6 32 ............................C GAAGAACGAACCGGCCGTGATGATGGATCGGC 1113 29 100.0 32 ............................. CTCGAAAGACGGCAGAGATTGATGCCAACGAT 1052 29 96.6 32 ............................C AACAAGACCTTTGTACTTCTCTTCATCCACCT 991 29 100.0 32 ............................. ATATCATGGTCACCCTTGTAAGTTTCTAGGTT 930 29 100.0 32 ............................. AATATCTTTTTCGTGAAGCTTGTTAATATCGG 869 29 100.0 32 ............................. ACCTTCAACACCCATGCTTAACAGTTCATAGG 808 29 96.6 32 ............................C GAAGATATTGAAGTATGGATTGTGTACCGCAA 747 29 100.0 32 ............................. GAAGCAACCGATTAGCGATTACTGGAAGAAGC 686 29 100.0 32 ............................. AGGAGGAACAAAAAATGAAATTTAACGAATTT 625 29 96.6 32 ............................C AACAGCTTCGCAAAACTTAAAAAGGGGTCGGG 564 29 100.0 32 ............................. AAATATATTCTGGTACTCGTCATAGCTCATGT 503 29 100.0 32 ............................. TAATGAATCACTGTGGAAGATTGCCAACTTAG 442 29 96.6 32 ............................C GACTTCATCGAGTAAAGCCCAACTCTAGTATA 381 29 100.0 32 ............................. GTACGGGGAAGAAGAGATGAAGATTACTGATC 320 29 96.6 32 ............................C TTCAGTCCGTCAAAGGCCGGGATGGACGACCT 259 29 100.0 32 ............................. CCCAGCACCTAATCCAGTAGAACATGTTGGGC 198 29 100.0 32 ............................. CTGCGCTGCGGCACGCTTATTTAGGATTCGGG 137 29 100.0 32 ............................. AAATATATTCTGGTACTCGGCATAGCTCATGT 76 29 93.1 0 ...................T..A...... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.6 32 GTGCTCCCCATGTATATGGGGGTGATCCT # Left flank : GCGACTGACGAAATAATATCGATAGGGGCAGTTAAGTCAACCAAGGGGAGAGGGCTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGAAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAATAGTGGTTGGTTATAATGTTGCATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCAGGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAAGGGTTTTTGAAGATTTGAAAATCGCTTGGTTACAGGGATCTTTTAAT # Right flank : TTAATGCAACACTGGGGAACACGGCCAATCTAGATGGTCCCAGTGGTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-620 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOCO01000022.1 Limosilactobacillus fermentum strain HPLD 27_S27_L001_R1_001__paired__contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 1 36 100.0 38 .................................... TCATCACAAAAAGATAACAAATAAATTGCGTCTACCTT 75 36 100.0 40 .................................... TGCTTTTCGGGCTTTCTAACCACTTTTGTTACGTCTTTCA 151 36 100.0 36 .................................... TGCCTAGATCTGTGAAGTCCTGTTCGTAAAACTCAA 223 36 100.0 37 .................................... AACGACTACCAGGATGGTAAGGAAATGATTCAAAAGT 296 36 100.0 35 .................................... AGGTCGTCCCTTGCCTCCTTAACACTACTACTAAT 367 36 100.0 36 .................................... AATAAGTGGGCGTATGGTTGTAAGTTACTTAATACA 439 36 100.0 39 .................................... ATTCTTGATTGTTTGGTTCATTTTGTTTACCCCTTTTCT 514 36 100.0 35 .................................... GTTTCTTCGTTGATATCTTCGTCGTATCCCCAGCC 585 36 72.2 0 .....G....A..T....TT......G....T.GTA | ========== ====== ====== ====== ==================================== ======================================== ================== 9 36 96.9 37 GATATAAACTGATCTCCGCCAGAAGGAGACGAAAAC # Left flank : | # Right flank : AAAAAGCGAGAGCGTGTATCGAAATCCTTAGATTTCAATACACGCTCTCTTTAGATTTAGGGGCCAAGAAAGCTCGTTGCAGTAGACTAGATATATAATTTATAATTGACGTATAGGTTATATTCGAGAGAAAGAAATTAACACCAAATGAAATAGTAGGATGTTGATTTATCGGCAGGTCCTTACTTCGGGAGGGGTAAAGGGTGAAGAATATAGTTTATGTGGAGAATGAATGTTTTGTTGGTGTCACTAAAGAAGGGTTAAAATTTTCAAATATCAAGACAAAGGAAAAGAAGTATCTGACCTTTGATGATATCGGTACGTTAGTGTTTGATAATAGAAAGTGTTATCTATCGGAGCGAGTGATTGAATATTGCATTCTCAATCACATTGGAATTTTATTCTGTGACCGAAGCCACTCTCCTTTAGAAATGATTGAGACCACCTACAATCAGGAACACCGCTATGAACGCTTGAAAAAGCAACTAACCTTAACTAGT # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACTGATCTCCGCCAGAAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //