Array 1 57246-62094 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPBG01000046.1 Campylobacter concisus strain AAUH-39CDf 1101584, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 57246 30 100.0 35 .............................. GTATCGTGCCAAACGACAAACTCAAAAAACAGCTT 57311 30 100.0 35 .............................. GAACATCCGTCTTGGCTGCCATAATCGCAAGCAAG 57376 30 100.0 37 .............................. ACATGCTTGAGGCAAGACTAGTGTTTTCCGTAAAAGA 57443 30 100.0 36 .............................. GAAGGAGCTTGCTAAAAATGGCTGAAACTACACATA 57509 30 100.0 34 .............................. ATATAGATATTGAATATTTGCTTAACGAGCATAA 57573 30 100.0 36 .............................. ACGTTTGAAATATCAGTTTTTGAAACAAGATAAGGG 57639 30 100.0 34 .............................. ATGGCTAAACGTATGCTTCAAAATGCAATAGATG 57703 30 100.0 33 .............................. TTATAGATGGCGGTGTAGTTTCTAGCAATACGA 57766 30 100.0 36 .............................. TCGTGAGCGCCTGCCTTTAAAAAGTGAGTTAATTTT 57832 30 100.0 35 .............................. AGCACCAAATACGCCAACGTAAGTTTTAAAGACGT 57897 30 100.0 37 .............................. AGAAAAGAGTATTTAAATCAAGTCCTAGCTGATGGCG 57964 30 100.0 37 .............................. ATTCATCTAGTGTTGGTTTTTGAAATCGTTTCGCTGA 58031 30 100.0 34 .............................. TGATGTTTATAGTGTTTCAAATAATCCTAATCAT 58095 30 100.0 35 .............................. GTACGATACGAAACTGAGCATCGCTTTGCAAAAAT 58160 30 100.0 36 .............................. TTTTGAGGACTTAATGGACTACGAGGCGAGCGAATT 58226 30 100.0 37 .............................. AACGAAATGGGCGTGCCTATGGGGGCAATAACTCTAG 58293 30 100.0 35 .............................. AAACATATCATGTCCATGCTCTCGTCATCTTTTGC 58358 30 100.0 34 .............................. AATTTACCTGTATCACTTTTTAAACCTTCATAAT 58422 30 100.0 36 .............................. TAGCCCATGATCTAAGCATCTATGCAAAATCATAGA 58488 30 100.0 36 .............................. TGAGCTAAAAGAGTGCGAGCCGATAGATGGTATCGA 58554 30 100.0 36 .............................. AACACAACGAGTGAGCCGGTAACGGTAGCGCCGACC 58620 30 100.0 35 .............................. GCTCCCTCCCACATATCACTAGCAGTTTGCCCTAT 58685 30 100.0 38 .............................. GCAGCAAATTTCGCAACGAATAAAGAGAAGCTTAATGA 58753 30 100.0 37 .............................. AGAAATGCGATGAATAGAACGCTCACAAAAGTATCAA 58820 30 100.0 37 .............................. AGAAATGCGATGAATAGAACGCTCACAAAAGTATCAA 58887 30 100.0 37 .............................. TATGGCTTTAAATTTGGTGCGTCTATTAGCTCGCTTG 58954 30 100.0 35 .............................. ATATAGTATCCATAGGGCTTTTTACGCTTTTTGCA 59019 30 100.0 37 .............................. ATCGATAATGCGATCGATGATGTTTTGGATAACCTCA 59086 30 100.0 36 .............................. TCCTAGAGCTATATTTGGATGTAGATGCAAAACTTG 59152 30 100.0 37 .............................. AGGATAAAAGGCAACCTAACCACAACTGGCAACATAA 59219 30 100.0 38 .............................. ATGATGAAATATCTCATTGATATAGAAAACTCTATCAA 59287 30 100.0 36 .............................. TTGAAATAACAGAACCTTCGTGTTGTCTCCAAACTA 59353 30 100.0 36 .............................. GGTATGAAAGAGAGTAAAGAGGTATTAGAGGCTGAA 59419 30 96.7 38 ...........................G.. AAATCTGGATCGAGCATAGCATTACGCATTGCATCAAA 59487 30 100.0 35 .............................. CTAGAAAATGTAATCGAGCAGAAAAAGAGCATTGA 59552 30 96.7 37 .............A................ AAGTTTGGGAGAACGAGCAAAAGCTGCGTGAGGCTCA 59619 30 100.0 34 .............................. TAAGCCTTTTGTAAAGCCTATTAGCACGGTTGAT 59683 30 100.0 39 .............................. AAATGGTATTTCATCGGTGCCGTCTATCTCGTCGCTATC 59752 30 100.0 38 .............................. TATACTTCGCAATGGACTTTACCGCAGACCTTGCCAAG 59820 30 100.0 39 .............................. AAATGGTATTTCATCGGTGCCGTCTATCTCGTCGCTATC 59889 30 100.0 38 .............................. TATACTTCGCAATGGACTTTACCGCAGACCTTGCCAAG 59957 30 100.0 39 .............................. AAATGGTATTTCATCGGTGCCGTCTATCTCGTCGCTATC 60026 30 100.0 38 .............................. TATACTTCGCAATGGACTTTACCGCAGACCTTGCCAAG 60094 30 100.0 34 .............................. ATGTTCCGCTAGTCTCGGAGGCTTCTACGATTAC 60158 30 100.0 36 .............................. TGTGCTTGATGGGCTGCGCAAGCAAGGAAGTGGCAA 60224 30 100.0 33 .............................. TGATAATGAAAAGCCAGGTATTCTTCATGCTAG 60287 30 100.0 35 .............................. CGTGCTAGAAAGTGCGGCCAGTGGGATAACTCAAA 60352 30 100.0 38 .............................. TATACTTCGCAATGGACTTTACCGCAGACCTTGCCAAG 60420 30 100.0 37 .............................. TTTGATTTAACTCTATATTTAAACCTGCTAAAGTCAA 60487 30 100.0 36 .............................. ATTGACGTTGCCAAAGCAACTAATAAAACTCATGCA 60553 30 100.0 34 .............................. TTGATGCAAGTGATGCGCCAGTTTGTTGATCCAT 60617 30 100.0 37 .............................. GCGTCTTTTCTGCTTTCATTGCGTAAGCCTCTCTCAA 60684 30 100.0 37 .............................. AACGAAATGGGCGTGCCTATGGGGGCAATAACTCTAG 60751 30 100.0 34 .............................. AGCTTTTCTGCTCCGCCTACATCAGAAAGCTTAG 60815 30 100.0 35 .............................. GGCGAAAGGGGGCTTTTATGACCCGGCCGGCTTGT 60880 30 100.0 36 .............................. TAGCCCATGATCTAAGCATCTATGCAAAATCATAGA 60946 30 100.0 37 .............................. TTGATGGCGAAGATAAGCGACAAGACAAAAGAAGCGA 61013 30 100.0 37 .............................. AATGCCATTCTTCAAGCTCTGATTTTAAGGCGATATT 61080 30 100.0 37 .............................. AACGAAATGGGCGTGCCTATGGGGGCAATAACTCTAG 61147 30 100.0 35 .............................. TTTCGCTGTCTTGCTCTACTGAAAAAAGATACTTA 61212 30 100.0 35 .............................. TTGACAGCGTGGGCGTTGGTGCTGGTGTGTTTGAT 61277 30 96.7 34 G............................. AGTGTATTTACAAAAGATGACGATAAGGACACAA 61341 30 96.7 35 .........................A.... GAAAAAGTATCAGTATTGCTTAGATCAAGCGTAGA 61406 30 100.0 35 .............................. TTTACAAAAACTATCCGATCTTGACACAGAGGCAC 61471 30 100.0 37 .............................. AATGCCATTCTTCAAGCTCTGATTTTAAGGCGATATT 61538 30 100.0 37 .............................. AACGAAATGGGCGTGCCTATGGGGGCAATAACTCTAG 61605 29 96.7 37 ......................-....... CGTGCTTGATGGGTTGCGAAAGCAAGCAGGAAGCTCT 61671 30 100.0 37 .............................. GTCGCCCTGAAAATGCCCTACATAAAAATCCAACATT 61738 30 96.7 36 ....A......................... AAAACTTGGCAAATAGGGTATGCTTCCCAGACCTTT 61804 30 100.0 34 .............................. AACAAAAAAGAAGAAAAGTATAGTTTTAGCGGTT 61868 30 96.7 35 .................G............ GCTATATTCTTTAAGCCTATCTTGATTGTTATATT 61933 30 100.0 35 .............................. TACGAATATTAATGAGTTTAAATTTGAGCTATGCG 61998 30 100.0 37 .............................. CCTGAAAGCGTGCAGACTGGCACTTTTATGTTTTTAG 62065 30 90.0 0 ..............T..........T...T | ========== ====== ====== ====== ============================== ======================================= ================== 74 30 99.6 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AGCTAGATCCTCGCATCGGTTTTTTGCACGAGCCAAACTACCGCGCGCTAAGCCTACATCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGCGATACGCTGATTTTTAACATGCTAAATAAAAAAGAGATCACCGCAAAGGACTTTCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCGCGCCTTTGCGAGACGCTCACGGTGGGTGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAACAAACAAGCTCAAAAAGTGCATCTGTGAGGACGCGCCTTATGAAGGATTTAAGTGGGAGTGAAATCGCATTTTAATAAAGCGTTTTTTAATATTTTAAAAAGCTTGAAATTTGGGGCTTGGCGTATTTGCACATGGCTAAATTTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCACTAGAATGCCTATAAAATAGGCTTTTTGGTGCT # Right flank : TCTTAAAAAAAGATATCCTTAAGCAAAAAGCTTAAAATTAAACTTTAAATTTAGTTTGATATATTAAATTATTAACATGAGTATTGATATTTTAAAATATTTCTAAAGGAGTTGGACCCAAATATGGGTCCGAATAAGGTAGTTATAGACCTTCAAAAGGGTTTGAAACTACGTCTTTGCGATCAACTATGTAAGGTATGATAGCTGCGTGGCGAGCTCTCTTGATTGCTTTTTCTACCATCTCTTGGTATCTTTTTGATGTGCCAGTTAGGCGTCTTGGCATGATTTTAAATCTCTCTGACAAGCAATACTTTAAAAGTGAAGTATCCTTGTAATCTATAAAATCAATTTTTGCTTCTGTAAATTTGCAATATTTGCGTGAATATTTTCTTTTTTCTGCCATTTTTTATCCTTTTAAATTAAAACGGTATTTCGTTATCGCCTTCAAAATTGTCAGCGTCAACATTTATATCAGGGATTTTCTCTTCATAATACTCTTG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //