Array 1 88878-89943 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJRW01000015.1 Escherichia coli strain MOD1-EC3831 MOD1-EC3831_15_length_112432_cov_29.1428, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 88878 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 88939 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 89000 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 89061 29 100.0 32 ............................. CCGGAGATCATCATATTCTGATACGTTCCGGT 89122 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 89183 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 89244 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 89305 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 89366 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 89427 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 89488 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 89549 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 89610 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 89671 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 89732 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 89793 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 89854 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 89915 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 105445-106450 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJRW01000015.1 Escherichia coli strain MOD1-EC3831 MOD1-EC3831_15_length_112432_cov_29.1428, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 105445 29 100.0 32 ............................. GAGCGCTGGCGCGCAGCGATACCTAATTGATG 105506 29 100.0 32 ............................. ACCGCAGGTGATATTGACACCGGAGCAGGAGG 105567 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 105628 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 105690 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 105751 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 105812 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 105873 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 105934 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 105995 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 106056 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 106117 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 106178 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 106239 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 106300 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 106361 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 106422 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //