Array 1 9609-9046 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXWD01000022.1 Streptomyces sp. ST1020 NODE_22_length_41073_cov_27.4935_ID_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9608 29 100.0 32 ............................. ATCGTGGCTGACGGATTGTCGGCGGGGAGGGG 9547 29 100.0 32 ............................. GCAATCGAGGAGGCGCGGGAGCGGGAGGCGCA 9486 29 96.6 14 .........A................... AAGCGTGACGGCCT Deletion [9444] 9443 28 86.2 32 .A...A....T.-................ ACCAACCCCCTGCCCAAGCAGCAGGACCGGAG GGAA [9434] 9379 29 100.0 32 ............................. CTTCGCTTTCGCACGCCAGGGATTCCGCACAC 9318 29 100.0 32 ............................. TCGCTCTCCGACAAGGCGGGCGGGACGCGGAC 9257 29 100.0 32 ............................. AACCCCTTGCCCTGTCCGCGGCGCATGGCTCG 9196 29 96.6 32 ...................A......... CCCGAGGCCAGGACGATGCTGGTGATCATCAC 9135 29 82.8 32 ...............A.A..AT..A.... AGACGCTGGGCGGGCGCATCCAGCGCCCGGGC 9074 28 86.2 0 ................T...A.-.....C | G [9048] ========== ====== ====== ====== ============================= ================================ ================== 10 29 94.8 30 GTTCTTCCCGCGCCAGCGGGGGTGGTTCG # Left flank : ACGGCCCATGTCCTGCCGCAGCACCCCACTCAGCCCCTCACGGCCCCGCACATCGCACAACTGGAACCCCGACGCCTTCCCCACGTCGTGCAATCCCGCACACAGCGCCGTCACCCCACGCGCCCGCTCCAGATCCCCCGCCACCCTCAACCCACGAGCGATCGCCCGCCGCTGAGACACCGACAGATACCGGTCCCACAAGAACAACGCCATCGCCGCCGCGTCCAACAGATGCCGCACCAACGGATACACCGGAAAAGCCCGATCCAGCCCCCGTGACTTCCCCCAGAGCGACTCGTCCACCTCCACGACCGGCCTCCCCATCACGCTAAACTCCTGCTCCCTCGCAGCTACTCCGACGACCGACGACCCAACCACAGCCCACCGACACCCACACACCGCACGCCGCATTCAGGCCGGATCGACGACAAGGACGACCGAGTGCCGACAGATCTAGCAAAGAAACGGAAAAGGGGTTACTGAAGCCCAGGTCAGAAAGT # Right flank : AGTGAACGTGGGCCTCGGCCTGCGGGAAGGTCGAAGGGACAAGACGGGCGGCCCAGGGCGAGGTCGCCGTCCTGGACGATGTCAGCGTTTGCCGTGGCCTTGCTCGCGGAGAGGGTGTTGTCGTTGGTGTCGAGGCGGTTCGTCAGGCACCGTTCGAGGCGGAACTGCGCATGCAGGAGCGGGCCCAGTCGAGAAGGCGAGTCATCGGGGCGTCCACAATCAGTCATCTATGTGTCAAGGGCCAGCGTTCAGCCCTCAGTCACATCAGGCGCTCGCAGCAGCCGCAGGAACGCCTTCACCCCCGCGATGATCTCCTTGTTGTCGGTGAGCCGGTTCACCGTGGACTCGAACTCCCGCCCCAGCGCGGTGAGCCGGCGGTCGGTGTCCTCGGCGCGTTCGTAGGTGACCATCGTCAACGCGTCGACCGTGCGCCGCAGTTCGGCGAGAGACCGGTACTGTTCCTCGGCCTTCTCCGCCAGGACCTTGTGCGCGGCCTCGGT # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.17, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCCCGCGCCAGCGGGGGTGGTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18895-19290 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXWD01000022.1 Streptomyces sp. ST1020 NODE_22_length_41073_cov_27.4935_ID_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18895 29 96.6 32 ...........A................. ATGCCGGGGACGACTTCGGTGGTCCAGCGGCT 18956 29 89.7 32 ..........TA......A.......... TCCTTCCAGATGCCGCCCGTGGCCTGCGACGC 19017 29 100.0 32 ............................. CGCTACGAGTTCACCGGCACCCTCACCCCCGC 19078 29 100.0 32 ............................. TCGGTGGGGGTCCAGCGGCCTTGGCCGGTGGT 19139 29 100.0 32 ............................. ATCCGGCCCAAGGCGCAGACCGCGCTGGAGAT 19200 29 100.0 32 ............................. ACGTACAGCGCAACAGGGTCGGACTGGCTCGA 19261 29 82.8 0 ...........A.........T..TC..C | A [19284] ========== ====== ====== ====== ============================= ================================ ================== 7 29 95.6 32 GTGCTTCCCGCGGACGCGGGGGTGAACCG # Left flank : CGATCTCTACAAAGCCGACACCACCCTCCCCCTCGCCTTCTCCCTCCACCAGTCCACCGACCCCGAATCCGACGCACGCCGCGCCTTCCGCGAGAACCTCCGCCTCATCAGACTCCTGCCGCGCATCGTCCACGACATCCAGACCCTCCTCACCCCCGCCGCCGACAACGACGACATCGAAGACGACGACAACGCCCCCGAACACCGCGACATCCGCCTCGTCCACCTCTGGGACCCCAAGACCGGCACCCTCCCCGCCGGAGTCAACTACGCCCCCACCGGAGACTGAGCGATGCCCTCCATGTTCGTCATCGCCACCACCGCCGTCCCCGACCACCTCCGCGGCGCACTCAGCCGCTGGACCACCGAAGTCATGGGCCCCGACGCCGGGTGCCCCATGACTTCGACGGGCTTGCACTCATGCGGATGACGGGGATACCTACATCGTCGAGCATGGCAAAGGGAGGCTAAGGTCGGTCTTGAGGTGCAGGTCAGGGAGA # Right flank : CTCACGAACATCTGGGGCCCGGCCGTCCCGGAAGTCTCCCGGCGTCTCATCCCCAACTGATTGCGCTAGGCGGGGATTTGTCGGCGGCGGCACTGCGTTGAGCGGCGGGCAACCGTACCGCGTCAAGCGCGAGGGCATCCGCAGCGCGGGTAAATCAAGACTTACCTTTGCGGGCTCCCACCCCCATAGTGGTGAGCCGCACCCAGAGGAGGCCCCCCGTTGTCGCAGATCAGCGACGGTCCCGCGCGTCAGGTGAAGGCGCAGCAGGCTTACGTGTCGACCATGTACGGGCTGTTCGACGAGAGGGTCGCGCAGGTCCGGGCGCAGCTCGCGGCTGTTCTCAAGGCGCCGGCCGACGGTGGGCGCGAGGTGTACGAGCGTGATCTTGCCGCTGCCCGGCTCGCCGGGGAGATTCGGCGTTATGAGGCGGCCGAGAGCGGCATGGTCTTTGGCCGGACCGACGCCGCAGACGGCACCGCCCTGCATATTGGGCGCCTCGG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTTCCCGCGGACGCGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCGACGCGGGGGTGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6017-5255 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXWD01000109.1 Streptomyces sp. ST1020 NODE_109_length_22335_cov_35.6156_ID_217, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6016 29 100.0 32 ............................. TCGGCGGACGTCACCCGAGGCACCAGGGTACC 5955 29 100.0 32 ............................. CTGTGCTTCCAGAAGCCCCACGGACATCGGCA 5894 29 96.6 32 ............................A GGATCTTGTCGGGCTGGGGCTGTCTCGGGGCG 5833 29 100.0 32 ............................. TGTGGTGAAATGTGTGGAGACCCTTGGTGCGG 5772 29 100.0 32 ............................. CGGTGCGCCGCTCTCGCCAGAGCACCCGCCAG 5711 29 96.6 32 ............................G GTGACGTCGGCGGAGACCGACCGGTTCTTCAC 5650 29 100.0 32 ............................. CGGTGGGTCAGCGAACCGACGTACGCCAGCCC 5589 29 96.6 32 ....................A........ TGGCCGCGCCTGGTCGTCGACTCCGTCGAGGA 5528 29 100.0 32 ............................. GGCACCGTGGGAGTGACCCAGCAGCCTGGCCA 5467 29 96.6 32 ......T...................... CAGGACGGCAGAGCGGGCATGACCCGGCGCCA 5406 29 96.6 32 .........A................... GACTCGCCGGTGAAATCCGGTGAGCAGCTGAT G [5384] 5344 29 96.6 31 .................A........... TTCACTCCCCGTAGACGATGACGGGTGGTAC 5284 29 86.2 0 ......A...........A.......T.A | G [5267] ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.4 32 GTGGTCCCCGCGCCCGCGGGGGTGTTCCC # Left flank : TCACCACGCAGGACCCCACCTGGGAAGACCCCATCTGGTGACCGTCATCGTCCTCGCCAACTGCCCCGCCGGCCTCCGCGGCTTCCTCACCCGCTGGCTCCTCGAAATCTCCCCCGGCGTCTTCCTCGGCGCCCCCTCGGCCCGCGTCCGCGACATCCTCTGGGAAGAGGTCCGCCAGTACCGCGGCAAAGGCCGCGCTCTCCTCGCCTACCAGACAGACACCGAACAAGGCTTCACCTTCGCCACCCACGAACACGCCTGGCACCCCACCGACCACGAGGGCCTCACCCTCCTCCACCGCCCCACCCAACAACCACCCACCACCACACCACCCAACCCACCACGCCAGGGCTGGAGCAAAGCAGCCAAACGCCGAAACTTCGGAAACAGGTAAAAGCAATCCACCTCATCCCCCCACCAACCCGAGAGGCGATATATCCGCTTCTCAAGAAGCAAGCAAAATCCACCCCTCTCCCGGATAAACCCGCAGGTCGCAGACT # Right flank : CTCACCAGATGCGTAGCCCTCGTTCGACCACGTCCTCCTCACCAACGTGACGCGGTTAAACCCGACCGCCAGGAACTGGCGCTGTCGTACAGCCTGTACGCACCACTGTTACTCGCAGGCTCAGCAGCGCCATAGTTGGCAGTGGCGCTGGGACGATTCATTGGAACTCAGTCGTAGTGGATGTCCTGGCTGACTTGAGATTCCGGGGCCAAGGCGTCGAGAGCCTTCTCTGGCAGGTCCGCCATGTCGTCATCTTGAACGTTCCCCAACCGGGTGCGCACACAGCGGACTGCGGCTCCTTGGCGAGGTCGGTGAGGCGCCCGCCATAGTTGGGATGATAGAGAGAAGCGGCGTTGCAGTCGGAGGCGATCATGGCGAAGTGCGTCGAGAAGGAACGATCAGACACAGCCACAACGAAGACTGCACCCACACCTTGAAATCATGGTTGAGGTTCCTCACGGCACCGCATTCATCCACCAAGTTGTGTATAGCTTGGGCAG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCCCGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17430-15695 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXWD01000109.1 Streptomyces sp. ST1020 NODE_109_length_22335_cov_35.6156_ID_217, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17429 29 100.0 32 ............................. GGCGGCCCCGGCGACGAACGCGGCGGCCTTGA 17368 29 100.0 32 ............................. TCCCGTGCCGCAGCCGCCGTGCTGAACGTCAG 17307 29 100.0 32 ............................. TCCCGCTCCTCGACGATGCGTTCCGCGTCCTT 17246 29 100.0 32 ............................. CGGCAGCGTGCAGCTGCAACCCGACGGCACCG 17185 29 100.0 32 ............................. CGGCGCGACGTAGGATCGCTGCTCGTGACTGC 17124 29 100.0 32 ............................. TCCTCGCCGTCCTTGAGGTCGCACTTCTCGAA 17063 29 100.0 32 ............................. GTTGTCCGCCATGTGGAGCGGGTGCTCGCGCG 17002 29 100.0 32 ............................. CCCGTCGAGCGTTCGACGCTTCGTGAGAGATG 16941 29 100.0 32 ............................. AGGCCGTCCCAGTTCCGGGGCGGTCTGGTCGG 16880 29 100.0 32 ............................. GTCGCCCTGACCGCGTAACCCCCCCTTGCCGG 16819 29 100.0 32 ............................. AGCACGGTAAGTGCTGCATTCCGGAGTTCTCG 16758 29 100.0 32 ............................. CGACCCGATCGAGGTGCCGTGCGACCGCTGCG 16697 29 100.0 32 ............................. TGGGCGACGACGTCGGCGGGTTGAGGGGTGAT 16636 29 100.0 32 ............................. CTGCTGCAACTCCTGGCGCAGATCCAGTGGAA 16575 29 100.0 32 ............................. TGTACGCAGATGCGTACACCTGTGCAAGGGTG 16514 29 100.0 30 ............................. TGAACAGCGGGTTGCCCTCGGTTGGGGGGC 16455 29 100.0 32 ............................. TTCATGTGCGAGACGGATTGGTGCCACATGTT 16394 29 100.0 32 ............................. CCGCCGCCGAACTCCTGCGCAAGCTGTACCTG 16333 29 100.0 32 ............................. GCGATCGACACCTCCAGCAGCCCCGCCGAGCG 16272 29 100.0 32 ............................. TCGCCCCACTGCTCGCCCGACATGCGGGCCCG 16211 29 100.0 32 ............................. CCGATGGCCATCTCCCGAGTGACCAAGCTGTA 16150 29 100.0 32 ............................. CCGTCGGACTGGGCGTACACCGTGAAGGAATC 16089 29 100.0 32 ............................. GGCCGCCACAAGAACCAGGTCCTGTCCGACGT 16028 29 100.0 32 ............................. TCGCGCGGCTGTACCCGCAGTGCCTGTACGAG 15967 29 89.7 32 ............T.....C..A....... GCCTCGCCGCCGACCGCCGTATCCGCGTGAGC 15906 29 86.2 32 ...................A.T.....TG TTAACTACTCATTCGAATGAGTGATGGATGCA 15845 29 96.6 32 ............................T TGTGCAGGGTGGGGGTAGGCCGGTTCTCCAGG 15784 29 100.0 32 ............................. CGACCCGGCTGGCGTCCGACAACGCCGTACGG 15723 29 79.3 0 A............CT.........GA..T | ========== ====== ====== ====== ============================= ================================ ================== 29 29 98.3 32 GTGGTCCCCGCGCACGCGGGGGTGTTCCC # Left flank : ACTGCATGATCCCGCTCGATCCCGACCCGGTGCGCACGCGTACGCGCGCGCTCGAAAGTATTTGCATTGATAAATACTCGTTTTCACCTTCCCTGCTCGAAGCGCATCGAAGGCCGAACATAAATAGTTTGCTGCACATCATGGCCGTCCTGTCGACAGCCCGAACCGATCAGCCCTTCCGAGACCCCTCGACGTCAACTGCGTTCAACCATCACCGACAGCCGCGACGCCAGCAGATCCGTATCCCGCCGCACCCCCGGAACGACCTCTGGCGATCAACGGCGTTCCGTACGATTGACATCTCGACGCCGGGGAGACCGATGCACCCCACACCCTTGACCTGTCAGCGCGCGAACCACGACGGCGAGTGCCACATCACCAACACAAGCACTTCACGGTCCTCTCTTTCAGCAAGCCACCACACAGTGACCGTAATGTCCGTTTCTCTGCAAGTGACGAAAAACGGCCCAGCACCCAGATAAAACCCCAGCTCACGCACT # Right flank : TCTTTCCGTCCCGGAGGCCCTTTCTGACCTGAGAGGGCCTCCACCTCCGCATGCAGGGAATGGGAGCCATGTCAGAAGCAGCCATGGACGCTCCGGATGTCCGGTTCCCTTGGGGGGACTTGTCCGCCCCCACCAGGTCGGTGTGGGCGAAGTCGGAGATCAAGTCGGGTGGCTGGCTGCCTCTTTGGCGACACATGGCCGACAGCGGTGCGGTGGCAGGCCGGCTCTGGGCGGAGTGGCTGCCTCGTTCGGTGAAGGAGCTGGTGGCGGAGGCGCTGCCCGGTGGTGAGGACGATGCTCACCGGCTTGTCCGATTCCTGGCCGGTGTTCACGACGTGGGTAAATCCACCCCCGCTTTTGCCTGCCAGTTCGAGCCGCTGGCCGATTCGATGCGCCGCGCCGGACTCGACATGCCGCTCTCCCGCGATTACGGGCAGGACCGTCGAATAGCACCGCACGGCCTGGCTGGGCAATCGCTGCTCCAGGAGTGGATGGCCGAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5116-4843 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXWD01000407.1 Streptomyces sp. ST1020 NODE_407_length_8413_cov_23.3955_ID_813, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5115 29 100.0 32 ............................. GGATCGGTGCCCTCGACTCCTTCCGGATGGAT 5054 29 100.0 32 ............................. CGCTCCGTCTACACGGTCAACGTCGAGTACCG 4993 29 96.6 32 ................T............ GTGGCTCCGCTCGGCGGGCGGCCCTGGTCGTC 4932 29 96.6 32 .....................A....... GCGCGGGCGGTGTCGATGGCGGCCCCGTAGTC 4871 29 96.6 0 .........T................... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.0 32 GTGGTCCCCGCGCACGCGGGGGTGTTCCC # Left flank : CCATGCGTTCGCATTAGCTAAGTCAACATTGGCCAGGTTGCGGATCGGACGGCACTCAATCATCTCGACCTCTACCCAGAAGGCAGAAACTGCGAGCCCTGCGGACACCAAGGACGATCTGAACTTCGCCCAGCAAACGTCCATGCCGACGCCCGGCAGGCCGGCCCGAACTCCCAACCGTGCAAGCTTCGAGGGCGCAGCCCAAGACCCCCGTCTGCAAACCCCGGCGCCAACAGCGACCCAGTCCAGCCACACCCTCGAAACAACCCCTGGCGACCAGCAGCGTTCCGTACGATTGACATCTCGACGCCGGGGAGACCAATGCCCTTCACGCCCGCGACCAGCCAGCACGCGAACCACAACAACCAGCACTGCGTCACCAGCACCAGCACTCCCCACCCCCCTCTTCCAGCAAGCCACCACCAGTGACCAAAATGTCCGTTTCTCTACAAGTAACGAAAAACAGCCCAGCAGCCAGCTAAAGCCCCAGCTCACGCACT # Right flank : GCGGTGGCGATCATGTCTTTGGGCGCGGTGGCGACTCTGCTGCTTAGTTCGGTGTCCTGGCGGCGAGTTGGTGGCTGAGGTGCGTAAGTCTGCTAGGCCGGGGTGTGAAGGGTGGTTGGCTGGGGTTCGGGTGGGCGTCGAGGCGGATGATGTTGACGGCGGTGGTGGAGAAGGCGTACTGGAGGCGGACCTTGGGCAGGCCGTGGTAGCGGGCCCGGCGGAGGCCAGTGACGTCGAGGGGCTGGTTGATGGTGCCCTCGGTCCCGGCGCGGAGGGCGTATTTGGTCTTCCAGGTCTTGGTGGCCTGCTCGGCCTGGGCTTCGGTCAGGGTCTCGTGGAGTTCCTTCGGGCGGAGGCTGAGGGTGCGGGTGCCGCGTGCGGGGGTCTTGCACTTGTCCTGGACGGGGCGGGCATGGCCGTCGGTGCGGGCGAATTGGATGGCGTCGCGGCCGTGCTGCCGGGCGGGGAACCAGCCGGTGCTGGTGCGGACTTGCGGGCAG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 41004-42867 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXWD01000016.1 Streptomyces sp. ST1020 NODE_16_length_44170_cov_33.4637_ID_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 41004 29 100.0 32 ............................. ACGCGCCACCGTGGCAGCATCGCCCGCCTCGA 41065 29 100.0 32 ............................. TGTCCATCTCCCCGAGGGGGCTGAAGGCTCAT 41126 29 100.0 32 ............................. ATCGCCCGCGCGTCGTTCTCGGAGGTCACCGC 41187 29 100.0 32 ............................. TACCTGCACGGCGCGCACGTCGGCGGCGCCGA 41248 29 100.0 32 ............................. GACCATGACGACGTGCTAAGGCCACAAAATCG 41309 29 100.0 33 ............................. CGGGACCCGAGCCCGTCGAACAGCGCGTCCTGG 41371 29 100.0 32 ............................. CGGTAGTCCACGACGTCCACCGGGAAGGTCGG 41432 29 100.0 32 ............................. CTGGGCGACCTCGCACGAATCACCGCCCGCCG 41493 29 100.0 32 ............................. TGCGTCCCCGCGCGGTCGAGGATGCACACCGC 41554 29 100.0 32 ............................. CACGGCGATCACCTGCGGAAGCTTGCCGCCCT 41615 29 100.0 32 ............................. GCTCTGATCCGCCGAGCAGCGGGCCGGGGCTG 41676 29 100.0 32 ............................. CACCGCCACGAGCAGTTGCACGCACGCCTGCA 41737 29 100.0 32 ............................. CGCATGTCGAACCTGTTCATGGACGCGGCGCG 41798 29 100.0 32 ............................. GCCTTGGCCTGGTCGATGAGCAGGTCCGTTCC 41859 29 100.0 32 ............................. GGAGAAGAAGCTTTGCGTCAAGTTCAAAGGCA 41920 29 100.0 32 ............................. CGCAAGCGCATCCCTATCAACCCTGAGGCCGA 41981 29 100.0 32 ............................. GTGTCCACGGCCAGGTCGCGCGCGCTGGTTGC 42042 29 100.0 32 ............................. AGATCGGCCGCGCGGCGTGTGTTGAAGCAGTG 42103 29 100.0 32 ............................. GTCCTCACCGCGTCCGCCGAATCCCGCCCCGC 42164 29 100.0 32 ............................. CCGGTCGGCAGGCCCATCACGACCTCGCCGTT 42225 29 100.0 32 ............................. TGGGGGCGCGGCGCCGCCTACGTCGTTGTCCA 42286 29 100.0 32 ............................. TCCGGTCATGCGCCCGGAGAACGGAGCCCCGA 42347 29 100.0 32 ............................. CCTTCGTGCTCGGCGTCCTCCCGGGTGCCGGT 42408 29 96.6 32 ............................G CAGGGCACGACAAGACAGCCGAAGCCGCATTC 42469 29 100.0 32 ............................. ACCTCTTGTTCCCAGCGCCGATGCAGAACCAG 42530 29 100.0 32 ............................. TCGTCGGTCTGCCGGCTACGCACGGCCCGTGC 42591 29 100.0 32 ............................. GGTGAGCCGGTCGTCTGGATGAGGGCGGACGG 42652 29 100.0 32 ............................. CGGGGGAGCGTCTCGTAAGTGGGCACAGTGTC 42713 29 96.6 32 ............................T CCTCCGGAGCAGTAGACGATCACGCCGTACTG 42774 29 100.0 32 ............................. GACCCCTGGACGGTCGTCGCGGTCATCGACGT 42835 29 93.1 0 ............T...............T | GGGG [42852] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.6 32 GTGGTCCCCGCGCACGCGGGGGTGTTCCC # Left flank : GGGTCCTCTCGTTTGCGCGAGCTAGAGGTTGCTGGGCTCGGGGGCAGGACGTCTTTCACGGCGCCCGAGGCGGCTCCGGGTGGCTGGAGGGTATCCGGGTGGGGAGGAGGGCGGGGGGTGTTGGCGCCGGTGGTCTCTGCGGGCCCTTGAATGCTCCGTCTTCTCCCGGGATGCGGTGCTCGCTCCAACTCCCGTGGGGGTGGAGGCTGACGTCGGATCCATTTCCGGGGGCGTCTCTGCTGCTGGGGATGTTCAGGCGTTCACTGAAGCGCCGGGCTACCGGGGGGGCGCGTCGAGGGAACTCGGCCTTCGACGATCGTGGGGCGGTGAGCAACGGGGGGCGTGGGGCAGGGCGCTGAGGAGTTCGACGGGGGTGGGTGGGTAGGGGTGGCGGGGATAGGGTTAGGTCCGGAGGTTCGGGGAGGGGTGACGAAATGTCCGGTTCTCGGGAAGTAATGAGAAACGGCCGCTCGCCCGGATAAAGACCCAGGTCACGAACT # Right flank : TAGCCGTTGAAGGTGTTCACGGTCGAGACTGTCGTGGTTCCTGCTCGCGGGAGTACGGCATCTCCAACGCCAGCGGGTCGCCGTCCGTAGGCTGGGGCTCGTCTCAGGAAGTGCAAGTGACACTCCGCAGCGAGGACTTTCCTGGTGATGACTCGCACGGCGTGAAGACCCTGCCGTGCTCTGGTGGAGTCGTGAGCTGGACCGGCAACTGGGACAGTGACGACCTCATGAGTCGCCGTGCGACCGGCGCGGCCGGCTGTGCCTGATAGGTGCGGGTCGGTCGGTGCTTTGTGGGCGCCACCAGTTGCGGGTCAGCAGTGCTCCCATCACTGCGCCCGCCGTGTTGAGCAGGACATCGTCCGTGGACGATACGCGGCCCACCGCCAGTGCGTACTGGGTGATCTCCACTGCCGTCGAGAGGAGTACCGCGATGGCGGCCACCCTTCCCAGGGTTCTGGAACGGCGGCTCCGGATCGGTAGGAGGGCACCGAAAACGAGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //