Array 1 1217516-1217743 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK211260.1 Pseudothermotoga elfii DSM 9442 = NBRC 107921 strain DSM 9442 Q395DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1217516 30 100.0 36 .............................. AGCTTTATACTGCTTAAAAGGGGTTGAAAATATGGT 1217582 30 100.0 36 .............................. TTGGCAAATAGAGAAGTTCTCTCTCAAAATCTACTC 1217648 30 100.0 36 .............................. TCTATATTCACACAAAAAGAGGGCTTAGCAAAATTG 1217714 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 36 GTTTCCATCCCTCTAAGGTTCGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTT # Right flank : CAGCGATATGCAATATAATCTATATGATGATCCATTTCAGCAGGCAGAGTATGCTTATAGTCTTATTAAGAGCGAGGTGATTTCAGATGGCAATCAGGAATGTTACGGTAATCCCTGCTCGTAAACGGATTGGAAATAGTGCAAAGGCTGAAGAATTGCCTAAGCTTCGGGTAGCAGCCTATTGCCGCGTATCTACGGACAGCGAGGAGCAGGCAACCAGTTATGAAGCGCAAATTGAGCACTACACAAACTACATTAAAAGCAATCCGGAATGGGAGTTAGCTGGCATATTTGCGGATGAAGGGATTACTGGAACCAACACGAAAAAGCGTGAAGAGTTTAACCGGATGATAGAAGAATGTATGCAGGGCAAAATCGATATGATAATTACGAAATCTATCAGCCGTTTTGCAAGAAATACGCTGGACTGCCTAAAGTACATAAGGCAGCTTAAAGAAAAAAATATTCCAGTTTACTTTGAAAAGGAAAATATAAACACA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCTCTAAGGTTCGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 2 1228530-1228890 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK211260.1 Pseudothermotoga elfii DSM 9442 = NBRC 107921 strain DSM 9442 Q395DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1228530 30 100.0 36 .............................. TATCAAAAAAGTTCCAGAAGAAATTCCTTTTGGTGC 1228596 30 100.0 36 .............................. CGGATATGCATTACAACAAGGGGCTTGGCAAACTTA 1228662 30 100.0 37 .............................. TTAATCGCTGCAATCACGTTATCACTTCCTTATATAA 1228729 30 100.0 36 .............................. ACGAAATAGAACACTCTAATTTTGAACTTCCTATAG 1228795 30 100.0 36 .............................. ATCAGTTAGATCTCTCAGCATCTTGTACCATTGCTC 1228861 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 100.0 36 GTTTCCATCCCTCTAAGGTTCGATTGAAAC # Left flank : AACATAAATTGTACCATCTGCATTATATTCTACTTGAGCTGTAGGGTGTAACTCTTCATCGAGTAAATCACCAAAACCGATGATGTTATAGTTAGAGTCTAGAATTACTGGATAAAAACATGTTGCACCTTCGTAGCGACCTGAAGTGCTTCCCCAACGTCTTAAATTATATACATCTCCACCAGTATGTTGCTTGCGAAAAATAGTACTTTCTGATGAATATGAAAATATTGCATATTCATGAGTCACAGAAAATTTTTTGCCCTGAGTTCCGCCGGGATTATGCTGAATGGTTATGCAGGTATGAGTTAGGTTTGGAAAAATTTCGTGAAGGAGAATCCATAGATGAGCATATTCATTGTCATCTATTGTAGTAATCAAAACACCATCATCAGCAAGTATTCTTTTTGCTATCTTTAAACGTTTCTGCATCATGGATAGCCATTTACTATGACGCCAATTATCAGTGGAATCAACATAATCATTATTATATTGCACAC # Right flank : TTAAAGAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCTCTAAGGTTCGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA //