Array 1 628328-628597 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP052867.1 Burkholderia glumae strain HN1 chromosome 1, complete sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	============================	=================================	==================
    628328	    28	  92.9	    32	...T.......G................	GGGATCTCGACGTATCCGTTTCGCATGACGCG 	
    628388	    28	  89.3	    33	...AT......G................	CTCGCGGTAAGTCATGCCGCGTCCCCGTTCGAG	
    628449	    28	 100.0	    33	............................	TGCACGCACTGGCCGGTGCCGTGTGCGCTCGTG	
    628510	    28	 100.0	    32	............................	AGAGCAGCAGGCGCTCCAGTTCGCGCCGGTAG 	
    628570	    28	 100.0	     0	............................	|                                	
==========	======	======	======	============================	=================================	==================
         5	    28	  96.4	    33	GTTCGCTGCCGTGTAGGCAGCTTAGAAA	                                 	       

# Left flank :   TTCCGAGGCGGTTTTCACCAGCGTGCGGAACGCCGCCGCGTCGAGCGGCTTCGGATTCTTCTTGTCGCGCCCCATCGTCCAGGGGCCGACCAGCGCCGGCTCGGCCTCGCCGTCCTTGATCATTGCGACGGCCCAGCCGTCGTCGTCCTCGTTCTTGATCACGCGCGCGGTCCAGCCGCTGTCGTGCCAGAGGCCGTCCTCGTGGATCGGGCTGTCGTCCTGGGCTGGGTCGGTATCGGTGGCGTGGTCGGTCATGAGGCGTCGGGCGCGGGTTCGGGGGCTTGGGTGGGCGGCTATTGTAAACGTTTCGATCGGCGGCAATGGCGCGCGCCGCCGCAGCTGGCCGTGCGGCCGGGTGGTGGCTGCTGAACCCTTTTTTCGGCAGAATGCGCGAGGGGCTGCAAAATCAATGGGTTAGCGAGAGGCGGGAAATTTGGGGGGTGCGAGGTGTCGGGCGGGAATTGGTTTTTGAATCAAGGGGGTAGGTGGGTTTTTGTTCA
# Right flank :  AATGCTCGACGCCGCTCCCGACGTATTCGCCCGCCGTATTGTTGGCTGGCGCGTCAGTTCGTCGATGGCCACGGACTTCGTTCTTGATGCGCTTGAACAGGCGTTGTACGCACGCCAACCAAACGCCGACGGGACCTTGATACATCACTCCGATAGGGGGTCTCAATACGTCAGCATTCTCTACAGCGAACGTTTGGCCGAGGCGAGTATCGAGCCGTCCGTCGGCAGCCGTGGCGACAGCTACGATAACGCGCTGGCTGAAACGATCAACGGCCTGTACAAGACGGAACTGATTCCCGCCCGCCGAGGCTGAGGCAAACTACTACAGGCAACTCAGAAATGCTGCTGAAGTGCCTGCATCAACTTAAACCAACCGGCCTCCACGATTCCCGGTGCGGTTCAGCCTGGCGAATCAGTTACAAGATAAGTATTGACGGTGGCGGCGCTTGACGTATAACGTGGTGCTTGAAGTTCAAGAAGTTCGAGTGCTGTTCATCAAT

# Questionable array : NO	 Score: 5.88
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTCGCTGCCGTGTAGGCAGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [6,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTTCGCTGCCGTGCAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-11.90,-11.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [6-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.14,0.78   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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