Array 1 266-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFZB01000038.1 Endosymbiont of Tevnia jerichonana (vent Tica) TevJSymbl, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 265 32 100.0 33 ................................ ACTCTGCACGATGAGATCAACGTCCCACCGCAG 200 32 100.0 35 ................................ ACAATAATTTTAGATTCGATAACCGCATCGCGAAG 133 32 100.0 34 ................................ GCTTTAGTCGGGTCTTGCTCTACCCGCCAAGCAC 67 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 100.0 34 GTCGCCCCCCCTGCGGGGGCGCGGATTGAAAC # Left flank : AGTGGAGAGCTGTCATGATGGTACTCATCACCTATGATGTTCGCACCGAAACCCCAGATGGCCCCCGTCGCTTGCGCCGGGTTGCCAAGGCTTGTCAGGATTATGGCCAGCGGGTCCAATACTCCGTCTTCGAATGTCTGGTGGACCCGGCCCAGTGGGTGCAGCTCAAACAGCGCTTGATCGAAGAGATCGATACCGACCAGGACAGCCTGCGCTTCTACTATCTCGGTGCCAACTGGAAAAGGCGGGTGGAACATATCGGCGCCAAAGCCGGCTATGATCCAGAAGGCCCCCTGATCATCTGATCCTCCTGCGCGAACCCCAAGCGGACAGATAATGCCTGGCAGGTTCGCGCGGCTCTTTAAACAAAGTGAAAACAGAGCGTTATTGATGATGAGCGGATGCGTGCCTGAGCAAGAGAGTGAGAGTGCACCAGAAAGTAACAGCTTCGCGGAAATGTATGGTAAAAACCTTACTGCTCCAATAGTTACTGTGGAGCA # Right flank : CAGGCCTGGTGCATTGGCTATAGGGAGTCTGGGAAA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCCTGCGGGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCCTCGCGGGGGCGCGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.10,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 399-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFZB01000052.1 Endosymbiont of Tevnia jerichonana (vent Tica) TevJSymbz, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 398 29 96.6 32 ............................T CAAAGGGAGGGCCATGCGTCGCCGCCAAGTGA 337 29 100.0 32 ............................. CGGTCAAAACCACTTCTAATTCGCGATCAAAA 276 29 100.0 32 ............................. GCAATTAGTGGCGTCGCTCAGGCGATTATCAA 215 29 100.0 32 ............................. AGTCGAGCCTTAATTCAGTAGTGCTGTGCCTA 154 29 100.0 33 ............................. TCGACCTCGACTTTGGCTGAGTTGATAATCACC 92 29 100.0 32 ............................. ATCATCAAATCGTCAACTGTTGGTGATTCACA 31 28 96.6 0 ........-.................... | ========== ====== ====== ====== ============================= ================================= ================== 7 29 99.0 32 GTGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : GATACTCACCGCCGGCGAACTCGAGATGCCAAAACCGGCGCCGGACACCCAGCCCGTCGCCATCCCCGAAGAGAAAGGCCTGGGCGATGCTGGTCATCGTCACTGAAGCCATCCCGCCCCGACTGCGCGGACGCCTCGGCGTCTGGCTGGTGGAAGTGCGCGCCGGCGTCTACGTCGGCAACCCCTCCGCCCGGCTGCGTGACTTCATCTGGGAACAGGTGGAAGAAGGACTCGAGAACGGGAACGCCATCATGGCCTGGAGCACCAACACCGAATCGGGCTACGACTTCAAAACCCTTGGTACGAACCGCAGAATCCCCGTCGACTTCGACGGCATCCGCCTGGTCGCCTTTCTTCCCGAAAAGGAAGAAACAAATGCTCTTTAACAACCTGGAAATGACCTTCAGGCACCTCGATTGGAAACCATCCGATCGGCCAAAAAGATCGGTAGAAATCAACACGATGATTTTTCTTATCTCTATCAAATAGATAGAATAAGA # Right flank : GCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 40908-40206 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFZB01000030.1 Endosymbiont of Tevnia jerichonana (vent Tica) TevJSymbd, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 40907 29 100.0 32 ............................. ACTAATCGGCATCACATACCCCACGCCAGCAT 40846 29 100.0 32 ............................. CTCCTCAAGGGCTTCGATCACGTTAACAACAT 40785 29 100.0 32 ............................. CTGGAGTGGAGCGCGAGGCGGTGAGCCAGGGC 40724 29 100.0 33 ............................. AGCTATGACGCCGAGAAAAAAACGCGTTGGGCG 40662 29 100.0 31 ............................. TTATAACAAGCGCAATAAACACGGACAATTT 40602 29 93.1 33 AG........................... ACGCGACGAAACTGCCTTGGGCAGACGGCAAGC 40540 29 100.0 32 ............................. AATAGGCAGAATCTTGTGTACTGCGTCAATCA 40479 29 100.0 32 ............................. CTGTTGGGCCAGGGCGGCTTTATAGCTGTCAC 40418 29 100.0 32 ............................. GAATAGCTGGGTGATTTTATCTGCCCATTGAC 40357 29 96.6 32 ............................T GTGCCTGTTGAATTCGCGCGACCCAATGCCGT 40296 29 93.1 32 ........................T...T ACTTACGATCTAATCGCCTCGCGTAATAACTG 40235 29 86.2 0 .A...........T..........GC... | A [40212] ========== ====== ====== ====== ============================= ================================= ================== 12 29 97.4 32 GTGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : CCCGCGGGGATGAACCGCATAAACGCAACCCACACCCGGTAATTGAGA # Right flank : GAGTGTCGATTATCTCCGCTACTGAATCTGCGGTTCCCCCGCACCCGTGGCACGTCACCAGCTGCGAAACTAGCTACACGTTTAACCGCAAGGCGGCACAGCGCCTACATTCCGCTCTGTATGATCATTAATCTGCTGACACTCTCGTTCGTCACCTTTTGGGGCATTGCGGCTTATCTGGCTGTATGGAAGTTCTTTTTGCCCCCGCCCTGCTAATGTTGATCGGCTGGCAGTTCAGCTCTCGCTAAGACTCATCTGCCCCCTCATCAAGAGCCAAACAGCCTCAGGCAATCTCCGCGCCGGGCTTTCCTCAGCTGTGGGATCAACCAAGTCCGCCTCATATTCTCTCCTTGAAGCGGGTCACTCTCCGGGTACAGGCCGAACCCGCCTCGCCACCTCCAGCGCCCGTTCGCGGGCCTGTTCCACACTCTCAGCGCGAGCCAACGCCACGCCCATGCGGCGTCGGGTAAAGGATTGGGGTTTGCCGAACAGGCGCAGGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 63152-62860 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFZB01000022.1 Endosymbiont of Tevnia jerichonana (vent Tica) TevJSymav, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 63151 31 96.9 33 ..........-..................... CACGAACATCTCCAACAGGTTTACTCGCCTATT 63087 32 100.0 33 ................................ ATCACATTCCGCCAATGGTCGAACACTAGGCGC 63022 32 100.0 34 ................................ ATGATCCGCTGGATCACCTTGCCATTGGCCACCA 62956 32 100.0 34 ................................ ACGCATCGAGAATATCGATTACAATTCTCCACTA 62890 31 84.4 0 .........T.-.T..A..............A | ========== ====== ====== ====== ================================ ================================== ================== 5 32 96.3 34 GTCGCCCCCCCTGCGGGGGCGCGGATTGAAAC # Left flank : AGC # Right flank : CCATACAAGGTCCAGTGGGCATGGCGTTATGCGGCATGAAGATTCACGCCAGAATGACTTCGACTAAGGTGAAAAAGTGGTCGCAGCGTGTAACCGAGAGTAGCGATGCTCTCGATCTCGAGCCAGGCGTATTCACGTACGATGACCCGAGGCGGATAGCTGAATCCCTTAAACGCTCCGCTGAGCGCAGTCGACGCCGCAAGGCCGATCCGTTTCGCTCTGCGATGTCGATGCTGGCGTTCTACATCAATCGGGCAGGGGTTAAGCTTCCGACGGTTCAGCGAAATCGACTCGAGGAGGCCAAAGACGAACTGCGGGACCTCTTCGGAAAGCCACGCCAGAGGATCCGAGCATCGCATCGCGAGCGAAGATAAGCTGCGCCGCTTCGAGATCGATGAATGTACATCACCGTAAAAATCCGCCTAACAGGCAAATGCACTCGGACGTCAAAAAGCTCCACTGCGCTCCACTTTTTGACGCCACTGAGCCCAAACGTTAGG # Questionable array : NO Score: 8.87 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCCTGCGGGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCCTCGCGGGGGCGCGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.10,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //