Array 1 162300-162847 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ955733.1 Alloscardovia omnicolens strain CMW7705A Scaffold60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 162300 36 100.0 28 .................................... TAGCTCACAGTATCCCACTTTGATAATG 162364 36 100.0 28 .................................... AAAAATTATCGCTAATCAGCAAGTAGCT 162428 36 100.0 28 .................................... ACGGTGTTCTGCGATAGCTCTCGAGCTA 162492 36 100.0 28 .................................... AAAAATTATCGCTAATCAGCAAGTAGCT 162556 36 100.0 28 .................................... CCTTCGGTTGTTTTAGCTGAGGCTGGTG 162620 36 100.0 28 .................................... CCTCACATACATTGGTGTATCTGCAAAC 162684 36 100.0 28 .................................... GAGTGATAAATCTGGTAAGCAGGCTACG 162748 36 100.0 28 .................................... ATAGGCTTCTGGATTCTTCACAAGTATT 162812 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 9 36 100.0 28 CCATTTTATCAAGAGGTTAGAACGCTAATTCACAGC # Left flank : CAATGGAGAAGGTTTAACTATACCGAGCAAGATAAATGATTTTGCTCAACAGTACGCCCTCTACGTCGAGGACAAAGTTCAACAAATTGCTATTCCGCAATACGTTAAGGATTAACCATGAAAGTCGATGAGGACAGTGGTGGAATGTGGTGCTTGGTAATGTTTGATCTTCCCGTTAAAACAAAAAGGCAAAGACATAATGCAGTTGTATTCAGAGATTTATTGCTGGATATGGGATATTGCATGATCCAGTTTTCTGTTTACGCAAGATATACCCCAACAGCAGAAGGAAATCGTTCCACAGTTCGGACAATTAAGGAGAATCTGCCTCCTCAAGGCAAAATTCGTGTCTTACATATCTCAGATAAACAGTGGTCAAAATCGCTCAGATATGTCAATTTAGAGCAGGAAGATGACGGAGAAACTCCGGATACTTTGGTGCTTTTTTAATCGCGAAAAGCCTTGAAAAGGCTGGAATCTAACCCCTCGATCGGATTGCT # Right flank : CTACGTACTCGACTGATTCTCTTCCTACGCCATTTTATCAAGAGGTTAGAACGCTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCAAGAGGTTAGAACGCTAATTCACAGCATACACTTTAGGCAGTTGAGAAGCCTTACCATTTTATCAAGAGGTTAGAACGCTAATTCACAGCAAAAATTATCGCTAATCAGCAAGTAGCTCCATTTTATCAAGAGGTTAGAACGCTAATTCACAGCTACTTTCAAGCTCGATAATGACGCCGATCCATTTTATCAAGAGGTTAGAACGCTAATTCACAGCGTAAATGAATCGTAATCAATTCTCATATCCATTTTATCAAGAGGTTAGAACGCTAATTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCATTTTATCAAGAGGTTAGAACGCTAATTCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 163064-163227 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ955733.1 Alloscardovia omnicolens strain CMW7705A Scaffold60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 163064 36 100.0 28 .................................... AAAAATTATCGCTAATCAGCAAGTAGCT 163128 36 100.0 28 .................................... TACTTTCAAGCTCGATAATGACGCCGAT 163192 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 3 36 100.0 28 CCATTTTATCAAGAGGTTAGAACGCTAATTCACAGC # Left flank : TCAAGAGGTTAGAACGCTAATTCACAGCCCTTCGGTTGTTTTAGCTGAGGCTGGTGCCATTTTATCAAGAGGTTAGAACGCTAATTCACAGCCCTCACATACATTGGTGTATCTGCAAACCCATTTTATCAAGAGGTTAGAACGCTAATTCACAGCGAGTGATAAATCTGGTAAGCAGGCTACGCCATTTTATCAAGAGGTTAGAACGCTAATTCACAGCATAGGCTTCTGGATTCTTCACAAGTATTCCATTTTATCAAGAGGTTAGAACGCTAATTCACAGCTACGTACTCGACTGATTCTCTTCCTACGCCATTTTATCAAGAGGTTAGAACGCTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCAAGAGGTTAGAACGCTAATTCACAGCATACACTTTAGGCAGTTGAGAAGCCTTA # Right flank : CGTAAATGAATCGTAATCAATTCTCATATCCATTTTATCAAGAGGTTAGAACGCTAATTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATCAAGAGGTTAGAACGCTAATTCACAGCGAAGCCGCTTGAAATTAAATATCTCTTTCCATTTTATCAAGAGGTTAGAACGCTAATTCACAGCAAAAATTATCGCTAATCAGCAAGTAGCTCCATTTTATCAAGAGGTTAGAACGCTAATTCACAGCTCTGCACCGGGCAATCGTAGGCGGTCTGCCATTTTATCAAGAGGTTAGAACGCTAATTCACAGCTTCTTTAGCAATAAGCTTATGACCGAAGCCATTTTATCAAGAGGTTAGAACGCTAATTCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCATTTTATCAAGAGGTTAGAACGCTAATTCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 3 163448-163675 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ955733.1 Alloscardovia omnicolens strain CMW7705A Scaffold60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 163448 36 100.0 28 .................................... AAAAATTATCGCTAATCAGCAAGTAGCT 163512 36 100.0 28 .................................... TCTGCACCGGGCAATCGTAGGCGGTCTG 163576 36 100.0 28 .................................... TTCTTTAGCAATAAGCTTATGACCGAAG 163640 36 91.7 0 .................................NNN | ========== ====== ====== ====== ==================================== ============================ ================== 4 36 97.9 28 CCATTTTATCAAGAGGTTAGAACGCTAATTCACAGC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCAAGAGGTTAGAACGCTAATTCACAGCATACACTTTAGGCAGTTGAGAAGCCTTACCATTTTATCAAGAGGTTAGAACGCTAATTCACAGCAAAAATTATCGCTAATCAGCAAGTAGCTCCATTTTATCAAGAGGTTAGAACGCTAATTCACAGCTACTTTCAAGCTCGATAATGACGCCGATCCATTTTATCAAGAGGTTAGAACGCTAATTCACAGCGTAAATGAATCGTAATCAATTCTCATATCCATTTTATCAAGAGGTTAGAACGCTAATTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATCAAGAGGTTAGAACGCTAATTCACAGCGAAGCCGCTTGAAATTAAATATCTCTTT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATCAAGAGGTTAGAACGCTAATTCACAGCATGATCCAAACAACAACACCATGGGGAACCATTTTATCAAGAGGTTAGAACGCTAATTCACAGCTAGCCTCAATGAATTTATAAAGATTATCCCATTTTATCAAGAGGTTAGAACGCTAATTCACAGCGAGTGATAAATCTGGTAAGCAGGCTACGCCATTTTATCAAGAGGTTAGAACGCTAATTCACAGCGATAATCCTGTAGGATTTTAAGCGCGTACCATTTTATCAAGAGGTTAGAACGCTAATTCACAGCCGTGGCGCCGGTGATGCCTTGTGCAAGGCCATTTTATCAAGAGGTTAGAACGCTAATTCACAGCGCATGGAACAGGCAACTCCAAGACCACACCATTTTATCAAGAGGTTAGAA # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCATTTTATCAAGAGGTTAGAACGCTAATTCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 4 163769-164252 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ955733.1 Alloscardovia omnicolens strain CMW7705A Scaffold60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 163769 36 88.9 28 NNNN................................ ATGATCCAAACAACAACACCATGGGGAA 163833 36 100.0 28 .................................... TAGCCTCAATGAATTTATAAAGATTATC 163897 36 100.0 28 .................................... GAGTGATAAATCTGGTAAGCAGGCTACG 163961 36 100.0 28 .................................... GATAATCCTGTAGGATTTTAAGCGCGTA 164025 36 100.0 28 .................................... CGTGGCGCCGGTGATGCCTTGTGCAAGG 164089 36 100.0 28 .................................... GCATGGAACAGGCAACTCCAAGACCACA 164153 36 100.0 28 .................................... AGGCGTTAGGTGTTAAGCCTGAAGAGTT 164217 36 88.9 0 ................................NNNN | ========== ====== ====== ====== ==================================== ============================ ================== 8 36 97.2 28 CCATTTTATCAAGAGGTTAGAACGCTAATTCACAGC # Left flank : AGGTTAGAACGCTAATTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATCAAGAGGTTAGAACGCTAATTCACAGCGAAGCCGCTTGAAATTAAATATCTCTTTCCATTTTATCAAGAGGTTAGAACGCTAATTCACAGCAAAAATTATCGCTAATCAGCAAGTAGCTCCATTTTATCAAGAGGTTAGAACGCTAATTCACAGCTCTGCACCGGGCAATCGTAGGCGGTCTGCCATTTTATCAAGAGGTTAGAACGCTAATTCACAGCTTCTTTAGCAATAAGCTTATGACCGAAGCCATTTTATCAAGAGGTTAGAACGCTAATTCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTTTATCAAGAGGTTAGAACGCTAATTCACAGTAAATCTTGCATGCCGAGTGGAACTTGTGCTAATCAGTCAAAGTAGATGGTTGCTAATTCACAGCTAAGAATGGTGTAATTCTAGACAACGTGAATTGTATCGGAGGTTGAGAGATTTTTCGATCCTGAGTAGGTATTGTTCTAAATGAAATTCGTTTGTTGTCATCATGTTTTTGGGTGCATCAATCATTTTGGTAAGCGAGGTCTTATAGCTATCGGAGATAGCCCACACCCCTTAACCGATTAACCCCCATATTTCCCAACGCTCCCACACAATCAAAAAATCTCGAAAATATCGTTAAATTTTTCTCCTTTTTCAGCGTGTTGCACTTATATAGAGCACCCGGTTCGCGTTAAAGTAGTGTACGC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCATTTTATCAAGAGGTTAGAACGCTAATTCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //