Array 1 167978-167744 **** Predicted by CRISPRDetect 2.4 *** >NZ_CBLY010000002.1 Parasaccharibacter apium strain AM168, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 167977 36 100.0 30 .................................... TCGGTCTCTGCCTTGGTCTTCTCGACCATG 167911 36 100.0 30 .................................... ACATGCGGGATGCTGGAAACCTATTCCACC 167845 36 100.0 30 .................................... TTATTTTTAAAAACTTATTTAGAGCAAGGT 167779 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 AACCTACCATAGGCAAATCGGTAGGGAAACCACGGC # Left flank : ACCATGACTATTCTTGCAGCGACTGAAATTGTTGCCTCTAACCTAGTTAAAGCCCTTGAACATAACAGTGCTGCCTTACTGCGCCTGCCTGTCTGCATCGCTGGGGGTAGCTCATGAAAGCAGAGGAGACCCGATTCTTGTGGCTAATAATCTTTTTCGACCTCCCCGTCCGCACCAAAATTCAAAGACGGCAGGCAGCGCAGTTTCGTAATTTCCTACGTGATGATGGATTCATCATGCTACAATATTCCGTCTATGTTCGTGTCGGACGGGGACAAGACAGTCTCGATAAACATTTACGCCGGGTTCGGACCGCCCTCCCTAAAGAAGGAAGCGTCCGAGCTTTGCAAGTAACGGACAAACAGTATGGAAGGATGGAGATTATGCTCGGCCTTGCCAAAAAAACCGAAGGAATAGGCACGAAACAGATGGTGTTGCTATGATTTTCGATCGTAAAAACAATGAAAAATCATGCAACATCAATCTGTTACGCAAGAGCT # Right flank : AGAGGCAGGATTTCCCGTCCAGATAGAGGCAACCTACCATAGGCGAATCGCTAACCATCCAAGCGATTTGGAGCAATGTATTTTGTTTGGGGGGAGGATATTTTTGGATGCGGGGGTAGGATTTGAACCTACGACCTTCAGGTTATGAGCCTGACGAGCTACCGGGCTGCTCCACCCCGCGTTGGTGGGTGGTTTTTATGGGTGTGGGTGAGCGAGGGGACCTGGCGGCGACCGACTTTTCCGCTCCTTAAGGAGCAGTATCATAGGCGCTGGAGGCTTTAACGGCCGAGTTCGGGATGGGATCGGGTATGGATCCTCCGCCATGGCCACCAGGTCTTCCCGCTCACCCATGTGGGTGTTTGGGGGTGTTTTGGTTGGTGTTTTTTGGAGTGTGACTGACTACTGTGCATGTGTTTTGGTGTGTGAGAGATATGGGCGATTAGGATCAGTCAGCTACACATGTTGCCATGCTTTCACACCTGACCTATCGACGTCCTAGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACCTACCATAGGCAAATCGGTAGGGAAACCACGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 75976-74543 **** Predicted by CRISPRDetect 2.4 *** >NZ_CBLY010000004.1 Parasaccharibacter apium strain AM168, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 75975 29 100.0 32 ............................. CCATATTATTAGCAGTTTTCTCTAATTTAATA 75914 29 100.0 32 ............................. GTATTCGGGAGTTTTCAGGAAAAACTGCAGAA 75853 29 100.0 32 ............................. CCTGTTCATGACCAGCGGCATAGCCAACTTTT 75792 29 100.0 32 ............................. CCGATTGCTGTTTTTTTGAGACAGAGGGGATT 75731 29 100.0 32 ............................. CATTTTTTTTGAGTTTTCTGCGGAATCTGCTC 75670 29 100.0 32 ............................. GCCGCTACAGAAAGTCAAGCAAGAATGGCCCG 75609 29 100.0 32 ............................. CAGATTTTCGTTCCGGGTGGCGGGGCTGTTGA 75548 29 100.0 32 ............................. ACAAGAAAGTCGTTCTTCGCCAGACGAACTGA 75487 29 100.0 32 ............................. AAAATCCCCACGGCCTAGGATGAACCGCCAAC 75426 29 100.0 32 ............................. TTTTTTTTGACTAGACGATCAGCATCATCAAC 75365 29 100.0 32 ............................. TGAACCCGCAGCGGGCGTACGGCAGGGGAGCG 75304 29 100.0 32 ............................. GTCTTGCCCAGCTTACCCGCCTGAGCCAGCTT 75243 29 100.0 32 ............................. CCTTTTCAGGGCGCTACATTCGAGACGTTTTA 75182 29 100.0 32 ............................. AAACAGGAGAATAAAATGAGTGAAAACGCTGC 75121 29 100.0 32 ............................. GCAAAGGCCGAGCTTAGGGCCAATCGTGATCC 75060 29 100.0 32 ............................. GCACTCATCGCCATTGTGAACGGGACGGACAC 74999 29 100.0 32 ............................. ATCGTCATTGACACGTCCCTGCGCAATTTCAC 74938 29 100.0 32 ............................. AAGGCCGCGCGGCCCTGAATTGACGCCTGATT 74877 29 100.0 32 ............................. CTGGTCTGGTGGCCGCTCATTGGCGGCCAGTC 74816 29 100.0 32 ............................. CCGGGTATCCGCCAGCCGGAGCGCCTGCCCTT 74755 29 100.0 32 ............................. AGTGGGTTACCTATATGAAGGCGCTCATTTCG 74694 29 100.0 32 ............................. TAGTTGTCCTGCACGCCCCGTGTGAGGCCCTG 74633 29 100.0 32 ............................. TCAACAATCGCCTGACCGACACTGTTCAGAAC 74572 29 93.1 0 ......................CA..... | T [74545] ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 CTGTTCCCCGCCTACGCGGGGATGAACCG # Left flank : TCGTGTACTGCATGGCCCTCCTGCTGGAGCTGCTGCGGGGCAGGAATGAAAAAGGCGAGAAAATTGCGCTTCAGGAGCCGTTCCTGACGGCAGAACAGTTGAACATTGCTGCCTCTGATGATTTTGAGGCTTCCATCGGTCTGCCTGCTTTCGACAGCTGGCGTGATCTTCTGACTTCAGAGATTAAGCAGGAGATTGTGCGTGATCGGGAGCTGATCCGTCAGAAGGGTGTTCTGGCCAGCCTGCCCGTGTGATGAGGCGATGAGCCGTTGAAAATTGATTGTGTGTAGAGAAAGGGAGGCTCCGGCCTCCCTTTTTCATGTTTGCTGTCAATCTTGTGGATAAAATTTGCTGGAGTGGTTTTTGGCTGTTCAGCGTCTCAACTTTCTTCTGTAAGGGCCGGAGAGGACTTGCCTCGGCGAGGTCATTAAAATTATATTTAATTCGGTAAGTTCTTTGACAATTAAAAAAGACTTATAATACAAATGGTTACAGGAAGT # Right flank : GTGCCAGACCGTCATCACTGGCCTGTACCGAACTGTTCGCCGGTGGGTCATGGGGTGGTTGGTGGCATATGTGGTCGCCAGAGCCATTCCAGAGCTTCGGGAAGGGTCTGTTCGATGGTGGGGCCATCCACATGCCGGGCATTGCGGGCAAAGACAAATTGGTAATCATAGCCCTTGTCGGCCAGCACGCGGGCCATGTTTTCCCCAGCCAGCACCCAGTCATGCATGCCATCAGGCATGGACGGAACGGGGTAGAACAGGTCCTGGTCGCCTACTTCGTACCAGATGTGCAGCGGGGCCAGTGGTGCCGCCGGGATGAGCGCCGCACCGGGATGGGGGGGTACGGCTTCCGGTGTTCCGGCCCATGGGGAGTGAAGCTGCCATCCCCCGCCGGGCAGGGCGGGGTCGTGCGGCCATTGCTGGTTGACCAGCGAAGGAGAGTAGGCCAGCACCCGGTGATAGAGGTTGGGCCGGAACCAGGCCATGGCAAAGGCCGCTGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCCTACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCCTACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //