Array 1 10067-10430 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFCU010000002.1 Alkalihalobacillus clausii strain B603/Nb NODE_2_length_824433_cov_155.012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 10067 32 100.0 34 ................................ ATGTCAGACATGGCCTGATTGGCAAGCGTATATC 10133 32 100.0 36 ................................ TTTGGGCTCCTAATAACGTTTTATACATATTCTCAC 10201 32 100.0 33 ................................ GATCATCGTTTCCCCTCCTATCTATAATCCGCA 10266 32 100.0 35 ................................ TGAAATTGCGCCCTCCTGCGTAAACAGTGGGGCAA 10333 32 96.9 34 ..........T..................... CCCATAATCGTGTCTTTAGCATCGCCATATAGTG 10399 32 87.5 0 .............C........C.......TC | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 97.4 35 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : GCCCAGCAAGCCATTCGGTTAGTTAAACAACTTGAATTAGAAACATCGTCGATCCCGATCATAGTAAAAGGGAGTTTATTAGAGAAAAACGAATTTGTGCGCCACCATTTTGCCGAAAAACTAAAACAATGTTCAGCTGACATTTCGATTGTTTGTAAAAACCGACCAGCCGTAACAGGCGCTTTGCATGCATGGAAGATTTCAAGTCACCATTAAATAGGACCAACTTTTGTGCCTGGGCCGTTTCTTTAGAACGATTCAAGAGACAATGTTGAACCCAAGGGAAAGGATCACCTAAACGAGGATAACGAACAGTCAAAGTGCGAACCCCAAGCGCACATAAAATCCCTCGATCACCCGCACCAAAAATGGCCTTATATATGTGTTAAAATGTACAAAGATGTAATAATATGGTCTCATTTGCTGTGCTATGATAGAAAATAGAAGCGAAATCAATCATTTTCGGTTGTTTATTTTCCGGAAAATGGGTAAATGTCGCT # Right flank : CTTTTTAACAGATGCTACCGATTCCGCATCTAAAGGTCACACGTGTGTAAGTAGAGTTTGGCCCCCACTCTTTTTCACGCAAAAACGTCGCACTCTATTTTGAGTGGAACGATGATCACTTCTACCTCTTGTTTGATTCCTTTCCTAACAAACCCATTTTCTTCTTGTAAAAGGTCTTTTGGATAAATGCAACTACCATTCCCGTGTGGAGAGTGCAAAATGGCGTAGCCATTAAAGCGAATGTGCTTTCTGGCGCAATTGGGTTGTAACGAATTGGACAAACGCTTTGACGACAGAAAGGTCGAGTGCGGAATTGGAATAGATTAACCACGTTTTTCTTAATAGTGGGTGGTTATCAATGGCAAGGATGCGGTTGTATAATTGGTCATGCGGACGAAGGGAAATTTGAGGGATGATTGCGTATCCTAAGCCATTGCGTACCATTTCTTTGCAAGTCTCGATACGGTCGACTTCCATCGTTACCATTGGTGGCTGGCTAA # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 24229-24461 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFCU010000002.1 Alkalihalobacillus clausii strain B603/Nb NODE_2_length_824433_cov_155.012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 24229 32 100.0 34 ................................ ATTTTGAAATTGGAAATCCAATAAGTTCATTCTT 24295 32 96.9 36 ..........T..................... TTCGTGAAACCTCACGTCAGCATTCACTACAAAACC 24363 32 100.0 35 ................................ AATAAATGGTCTGTAGATGATCTGTACACATCTAT 24430 32 75.0 0 .G........TC..........C.CA.A..C. | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 93.0 35 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : AAACAAATATATAGGAACAACATCAGATTCAGTACAAGAAGAAACGATTCTCTTATCTCCTCAGGCGATTGAGCATACGCCGTCATAAAAAATACCCCCTTCCGAGCTATATAATCAATGTTTAGGATGTCTCTCATTAAAAAAGCAAGCGTTACCAACATCCTAACACATGGACAAATCGTGTGTCTCTTATTGTAAAAACGGCGGTGGTGTTAGTTAGAACCCTTAGTATTACAGAATAGCAATACGGTGGAACGATCCTTAAAGGCAAACGATTCTCGATTTCTTCAATAAGCATTCGCCGATGCTCACTTTTCTCGAGTGCGAACCCTAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAACAGCCTCGAATATGGGTTACTATGTACAAAAATGTAATAATGTGACCTTGTTGGGTGTGCTATGATAAGAATTAGAAGGGGAACCATTCGTTTTCGGTTGTATATTTCCGGAAAATGGGTGAAATTCGCT # Right flank : TAAGACAAGCCCCACCGCTTGCTACAACAAGTCTTTTCCCTGCTCAATTCGAGTGCAAAATACGTTTCTCTTACTAGACCAACAAGTGCATCACACCTATAAATACACGTATTAAAACACAAAACTAGAAAGTAAATTCCAATTAAGGGAGGAGTAAACAATGGAAGAGAAAGAAATGCTAGAGCTCTTGTTACAGAAGGTAACTGATCTGGAATTGGGGTTGAAAGAGCAAAAAGAGCATAATGCCGCGGTAGCAAAAGATTTAGAAGACCAAAAAGAGCATAATGCTATGGCTGCAAAAGATATAAAAGAACAAAAAGGGCATAATGCTGCGGTCGCAAAAGATTTAAAAGAGCAAAAAGCCTATAATGCAGCATTCGCCAAAGACTTAAAAGAACAAAAAACGCAAGTTGCTGGGATCACAAAAGAACTAAAAGAGCAAAAAGAGCACTACTTGGCCATGGCACAAGATATCAAGGAATTAAAAGAAGATCAGCTCA # Questionable array : NO Score: 8.51 # Score Detail : 1:0, 2:3, 3:3, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 77912-78141 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFCU010000002.1 Alkalihalobacillus clausii strain B603/Nb NODE_2_length_824433_cov_155.012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 77912 32 100.0 33 ................................ GGTAATTTTCCGACCACTGTTATGCGTACCGTA 77977 32 100.0 34 ................................ CTCAATGCCGTCCATGGAAGGGTCTGCTGGTTCG 78043 32 100.0 35 ................................ TTTAAAGTACGGTTTGATGAAAGAGGAAAGCCGAT 78110 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 100.0 34 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : GTATCCCAATTATCGCGATTCAAATACTGACGATTATCGCCGCCAAAAAAATGATGGACGAAGACAAAGCATGGATTAATAACGTTAGAAAAGAAAAATAGGAAGGAGCCATGTAAAGCCTGCCGGCTACTTTTGCTGGCAGGCTTAAGCTTTGTATTTTTGGGAAAACTCGTATTTATGAGTGGCTGCTGGGATAGTGTTTGTGGAATTGGCGATTGCTTGCAAAGAAAGGCATCGATATTTAACCTATAAAAATTAAAGGCGAAAACATGATATAATTTTTTGTAGACTAACACAAATATAGCAAATAGCCTTTTATAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAAATATGAGGAAGTGTGTGTAAAAGTGGTGAAATGTTGTTGGTTTCCCATGATATGATAAAGGAAAAGAGCGGCTTTTCTCTATTATTTGTGGTTTAGATTCCAGAAAATAGGGAGATTTGACT # Right flank : TGTATTTTCAATTCGATACAAAAAAAGCCTCGGCACAAAAATGCTGGGGCTACAGTTTTTAGAATGGTATGTTACTTTTGCCTGTTGATTTAAAGGTACTTAATTTCGCCTGCAGTTGAATCAAAATTTGGTGGGGTAAATTGGCAACGATGGCTGGCAGTTCATTCTACCAAGGTCCATTTCTGAAAGATAGTCTGTGTTAACAACAAGGGAACATGCTATAATTGAAAAACAATAGCATAACGGTTACTCAAGGGTGGTCGGCACACTCCCATGAAAGGGGGTGTTGCTGTATGACAGTATTTGAAGGAATTTCCCTTATGTGACGTTTGGGCTTCTGATCGTTGCAATGCTGTCATTTCACAACCACAAAAAATAATCCACCCTTGAGTTAGTGGCTCAGGTGGATTATTCGTCCAATCGGCCGATCCCTTGCAGGGAACCGAGCTATTGTTTGACTGAAGGTGTTACAGCACCTTCAGTCTTTTTACTTTAGTCAT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 88865-89755 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFCU010000002.1 Alkalihalobacillus clausii strain B603/Nb NODE_2_length_824433_cov_155.012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 88865 32 100.0 33 ................................ ACAAAGTGCCGTCGTTTCGCTAACATCGCCGCC 88930 32 100.0 36 ................................ CCTATGGTTTTACAAGAATTAGGTGTGTCAGCTGAG 88998 32 100.0 33 ................................ TACTTCCTCCGTAGTCGTGTCGCCGGCAGCCCG 89063 32 100.0 35 ................................ CACCCTTTAGCTTTTAATAGTCCCATCATTGCCAC 89130 32 100.0 35 ................................ ACCTTTACAATATAGTCCATGACATTCAAGACGTC 89197 32 100.0 33 ................................ AAACCCCATATCAGAAAAGTGATTGAGATAAAT 89262 32 100.0 34 ................................ TAGAATATCGCGAGAAATCGAAGTTGCTAGGCAC 89328 32 100.0 33 ................................ AGCGCTGGCCGTACGAGCGTATCCAATGCCAGT 89393 32 100.0 35 ................................ AAACAGTGTCGGATTTAAATCTTGTTGGAAATTCG 89460 32 100.0 33 ................................ GGCGACCCAATCGTGGAGTTCCGCCTCAGTGAC 89525 32 100.0 35 ................................ TTTGAAAAACGTAGTCAATGCATCCTTTAAGGTTA 89592 32 100.0 35 ................................ TATTAAGTTTTCGCGGTACAAGGTTATTCCTCCTT 89659 32 100.0 33 ................................ ATCAGGGTAAGTAGCTGTTCTTTTTTCATTTTT 89724 32 90.6 0 G..........................A...A | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 99.3 34 ATCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : AACTGTATAGGTAAATGGAAACACCAAGATACAGAGGAACAGCGTGATAATAGAGTTGTAGAAACAACAGATCAAAGGGATGAAATTTTGCAAATTGCTACCTTTTGTCAGGAAATAAAAGACATAATTTCATATCCAAAAGGTAAAGTGGAGGGTGCTGGGAAAAATTCGGAGGCATCTCATCAATGGTTCACATTAAATAAAAGAAATGAGAAGCGAATCCTACCAACGATTCAAGAAGAACTATTTAAAAAAGATAACTCTCATTTGAAAGAACTATATGAAATAAAAAATAAACGCTAACAAGAAGCAAATATGTTGGTGCGAACCCTAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTAAAATATGAAATAATATGTGTAAAAGTGTTGAAATGTTGTTGGTTTCCCATGATATGATAAAGAAAAGCAGCGGCTTTTCCCTATTATTTATTGTTTTGCTTCAAAAAATAGGGGGATTTCGCT # Right flank : ATATATTTAGATTTGATAAAATGTAAGTCCTGTTTTATTAAAAAAATGCCTGCAACTAAACAGCCATTACTCAACGATCCGACAGTAATTGTATTCCAGTAAAGTCTAATAAAAAGAATAAAAAGGCCTTGGCACAGATGCCAAGGCTACAATTTTTAGAATGGTATATCACTTTTGCCTGTTAGTTTAAAGGTACATTAACTTCGCTCCGCAGTTGAATCAAAATTTGACGAGGATTAAAATGGCAACGATGGCTGACAGTTCGTCCTACCATTTGATCAACGGAGGCCTGTTTCTGAAAGATAATCTATGTTAACAATAAGGGAACATGCTATAATTGAAGAACAATAGCATAACGGTTACTCAAGGGTGGTCGGCACACTCCTCCGAAAGGAGGTGTTGCTGTATGACAGTATTTGAAGGGATTTCCCTTATGTTGACGTTCGGACTTCTGATCGTTGCAATGCTGTCGTTTCACAACCATAAAAAATAATCCACCC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 101421-101982 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFCU010000002.1 Alkalihalobacillus clausii strain B603/Nb NODE_2_length_824433_cov_155.012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 101421 32 93.8 34 ..........AT.................... CCTACAAGGGCAACAATAGTTTCACTATGATAAT 101487 32 100.0 35 ................................ CTACTTTGGTCATTTATAATCCCTACCTGCCAAGG 101554 32 100.0 34 ................................ AAAAGGATTCCTCCATTCTCTGCATAAAATCTTC 101620 32 100.0 35 ................................ GTCGAGATTATATAGGTATCGTCCAATTCCAAATT 101687 32 100.0 34 ................................ GATGACACGGGCCTGAATTTCGATTGGCCGAGAA 101753 32 100.0 33 ................................ ACTTTTGTTGCGTTGCGCTCTTTGATTACTTCG 101818 32 100.0 34 ................................ AGTTACAGCAACTTATAGCTTCACTCGGTCCAAT 101884 32 93.8 35 ..........AT.................... CAAACGTGCATCTTCTTGAGTTTTCAAATTGCTAC 101951 31 93.8 0 ............-.......T........... | A [101961] ========== ====== ====== ====== ================================ =================================== ================== 9 32 97.9 34 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : CGCCACAAAAGAAAAGTGCCTCCCACGAGAAATTGATGTGAAGCACTTGCAAGACACGCTGGTGAACCAAGGGGCGATATTAAGCTGACATTTTCGAATAAAAGGATTTGCAATGGTGCTTGAAGATGGACTACCTATAAAAATGAGACGAACAAGAAACTCCAAACATTGGGTTATGGAGTTTCTTGTTTTAGGTGTTCGTGGTATTAAAATGGGGTGGGATTAGAAGGATAGGTGGGAGCAACGGTTTAATTGGGTCAACCTAAAGAAGTTTGCCATTGAACATTAACGCCGTCGAAGACAAAAGCTTAAATCAGACGGTGCGAACCCCAAGCGCACATAAAATTACTAGATCACCCGCACCAAAATAGAGCGCGAATATGAGCTTATGTGTATAAAGATGTGAAAATATGGTTCATGTTCCTTGATATAATGAAGGGAAAGCGCGACTTTCCTGTATTATCTGTGGTTTTATTTCCAGCAAATAGGGGAATTTCGCT # Right flank : TTTGCTTCCGGCGAACGGAATGTGGCTTTCTGCTCGGCGCACTTTTTATAACTGCGCCAATTAACATCGACATGAATCGACGTTCGCTTGCGATAACGACTAGTCATGCAAAAAGCAAGTCCGAAAAACCAAATAAGCAATATAGGCGCACCGACGCCCATATTGCTTATTTTCGTTTTTATTGTCTATTTCAACGCTGGCCAAAATGCTTTATTCGCTTCGATTAAGTCATCTAGTATATCTTTTGCTACTTTTGCACTTGGCACGGTTTTCGATAATGTGATGGCTTGCCATAGTTTTTGGTAGGAACCTTCTTCAAACGCTTCTACTACTAATTTTTCGACGCCAACTTGTTGCTCCATGAGACTCTTTTGGAATCTAGGGATTTCTCCGACAACTAGTTTTTCTGGGCCGTTGCTGCCGACGATGCACGGGATTTCTACCATTGCTGTTGGGTCAAAGTTCGGGATGGCGCCATTGTTTTCGACAATCATTAACAT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 108938-109301 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFCU010000002.1 Alkalihalobacillus clausii strain B603/Nb NODE_2_length_824433_cov_155.012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 108938 32 100.0 35 ................................ ACACACAGCCCATTGTCTCTTCGTTTCACAGCTTC 109005 32 100.0 34 ................................ AATCACCTAATTTCTGTTGCCTTATAATCTCTTG 109071 32 100.0 34 ................................ AACCATGTGTTTGTAATCGGCAGAACTAATACCG 109137 32 100.0 35 ................................ CGTCCGGGGCATATAAATTGAATTCTTGGACTAGG 109204 32 96.9 34 ...........C.................... TTGCATTTCCCGTAAACGGGCAAAAAAAGGCGGC 109270 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 99.5 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : ATTTACGCATGCAGGTCAAGCACTGCTACTGAGAATGTATACACCAGGGGTCATTACCGCCATTATCGTGACCCTTCCATATTCACTATATTTGTTTTACCGGTTAGAAGCGGAATATAATATTCAGGTTAATGATCTAATTGCCAGTATCCCATACGGACTGACCATTATTCCAATCGTGGCTTTCGGTCATCTACTAGCTAAAAAAGTGATTCGGTAAAAAATGATAAGGTATTTCGTGGATCGTTTTTGGATTTAACATTGATAACAAGTGAGCAAACAAATATAACTTTGAGAAATGCTTTCTAACCTATTATTTTGGTGCGAACCCTAAGCGAACATAAAATTCCTGGATCACCCGCACCAAAAAAGAGCCTAAATATGAAATAATATGTGTAATAATGTATAAATCTCGTTTACGTCCTATGATATGATAGAAGAAAAGGGTGATTTTTCCCTATTATTTATAGTTTCACTCCAAGAAATAGGGAGATTTCGCT # Right flank : TCCATAGTCTTTGGATAGGGCATCGATAGGGTTAGCCGGAGAACTCTATGTTTATGCCATTTCCATTAGGCCACACGGCAGTTTTCTTTTGTGGGTTGTGAAAATAGTGTCCACGTAAAACGAGAGCCAGGAGTTTTCCTCCTGGCTCTGTCTGCTTTTTTCAAGAATTGCTTTGCTAAAATGCATGACTAAACAGCTGAACCAATCCGTTCGATGTGGATTTTTTGCTGATACTGTTCGGCTTGTGAAAAATCAATCGTTGGCAGCCAGTGGAGGCAGTTTGCCAATGAGAGGGCGCTGCCTGCTAATAGAGCTGCTTTTACATCGTTTGTTTTTCGCCACTCGCGTATAAAGGTGCCGAGAAAAATATCGCCTGAGGCGGTAGCATTTGTTACGTTAATCGTTGGGAGCGTGACACGCCAGATGTCTCCGTTGATTTTGGCGACTGTTCCTTCGCCGCCTAATGTGACGATGCAGTTAGGGTAAGGGCTGTTTTTTAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 115889-116186 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFCU010000002.1 Alkalihalobacillus clausii strain B603/Nb NODE_2_length_824433_cov_155.012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 115889 32 100.0 35 ................................ CCATCTTACAATTACCGCGTTTCTTTTGTTGGACG 115956 32 100.0 36 ................................ TACCAGTATTCAAACATAGTGCCATCACGAACAATT 116024 32 100.0 33 ................................ TCGAACAGTTGTTACATCAAAACGGTGTGGAGC 116089 32 100.0 34 ................................ TCGCGTTGCTCTTGTCTACAATTTGCCGCCTCAT 116155 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 100.0 35 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : AAAGCAAAAGAAGCAGCGAAAGAAATGGCGAAATCAAAAATTCGCATGGTTGGCAGTGAAAACACGGTTGTGCCAGCGTTTGCGTGAAAAGTGTGAGCCCGGACTGTCACCTTCGCTTGTTAGGCTATGTACTAACAAGCGGAGGTGTTTTTTCATTAATTGGGGAGGAAGGGAGAAGAACTCAATCGAATAGGTGTATAAGCAAGGAACCTCCTTACGCAAATAGAAGCTTTTTAATGGAAAGAGTAAAGTAGAGATAGACACAATTGAGCCAAGGAGATTAACTTTACAATTATTCATCTTTTGAGCCGTGATTCTTAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGGACTTTAATGTGGGATAATATGTGGAAAAGTGGCAAAATGTTGTTGGTGTCCCATGGTATTATATAGAAGAAGAGCGGCTTTTCTCTATTATTTATTAATGGGTTTCCAATAAATAGGGGAATATCGCT # Right flank : TTTTACCCCATACGACAACGCTAGTGAAGCTTGGAATTGGTTACTGTCCAGTTCCCTAATTTAGGGCTCCATTAGAATTAGGGGAAAAAGTAATGCAGAAATTAATAAAGGAACGAAAACAAGAAAAAGTTTATAGTTTAAAAAATAAAAAACGCACTTCTTGAAAAGTGCGTCTAAAAAACAAAGATATTTATTTTTCCTCAAGGGTTGTAAAAAAAATTTTCTCTTAGATTAATGAACGGTATCTCCTTTATCTCGAGTTTCAATTGTCGGAGAATCACGATCAATGACGACATTTGTTTGGAGGGTAAAAGAAACACACAATAATGCTGCAAATAGGGAAAACCATATTTTTTTCAAGGTTGATCGACTCCTATGTTTGATAGATTTTGGCGTGCACGATAGGCGACGTTTAAATACTTCCACGCTAGTTCTTGTTCTCCTTTTTGTTTAAAAAACGTTGCTGCTTCCTCTGCGATCTCCTCAATTTCAAAGTTCAT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 120198-120629 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFCU010000002.1 Alkalihalobacillus clausii strain B603/Nb NODE_2_length_824433_cov_155.012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 120198 32 100.0 35 ................................ CAAAAAGGATCAGCGATGAAGCGTTTTGCCAGATA 120265 32 100.0 34 ................................ AACTAGCAAGGAAAAATGCAAAATCTCAATTACT 120331 32 100.0 34 ................................ TGTCTCTGACATTACTACCCCCCTGTTAGCTAGG 120397 32 100.0 34 ................................ ATACGCCCTTGGCGCGGCATGGCGCTTTTTGTTA 120463 32 96.9 36 ........C....................... CATTTTAGGAGTTGACGCAGCGAACATCCGTTTATC 120531 32 96.9 33 ............A................... CCGTCTACGCACCCAATCACCAGGGTCGCCATC CT,G [120537,120555] 120599 31 75.0 0 ...A....CC.G.C....A.....G..-.... | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 95.5 34 GTCGCACTTTTTGTGAGTGCGTGGATTGAAAT # Left flank : GGAATATCCGAACCAAACCGATGCATGGAGTCTTGTTCATTTGGGGAAGGTCAGTTCATGGCTTTTATTAGTGATTGTTAGTTTTCTGATCGTCGCGACATTAAAACAGGTGAAGGGGAAAAGGCGCACTGGAGTAGATGCTAGTCAATCTTTATAAAAAGCAGTGCTTTAGTTTAGTAAGGAACTTTGCGTTTTTACGATTCTTATTATTTTGCCAGTGCAAACAGGTGCTTTTTTGAAGAAACCTATAGATGGCACAAGTATAATAGTAGTAAAGTTGAGGAGGCAACATTTACTTCGTATTATACGCAGTTCTTTTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAATTATGAAAAAATATGTATGAAAATGGCGAAATGTTGCTCGTTGTCCATGATATGATAAGTGAAAGAGCGGTTTTTACCTATTATTGATTGTTCTTCTTCCAATAATTAGGGGAATTTCGCA # Right flank : TAAAGGCGGGAGTAAGCCCCTCGCGCTTGCTCCCTTGTCACACGAGTGCGTCGCTAAGTTTCTAGCTATAGAATTCCGACCCCAGCTTGCATAAAAAATCCCCTTTTCTCGGAATCTCCCCAATTTCCCGCGCCCCAAAAATGTAGCCACATTTTTATTGCTCATAAAATTTTCCTAAATGGTAATATGTTTAAAAAGACTAGATACGGGGGGAGCGAAATTGGAAATTCGTACAGTGAAAGACTCTGACTACTTATGTAATTTCTCCACTAATTAATAAGTGGTGGGGTGGAAGAAAGATGTCTGATAAGTTGCCCAAATTATTTTTCGACCACTTTAGCAATACAAGTTTCATTGCTGAAAAGGATGAAAAACTTATTGGCTTTCTAATAGGATTCCTTTCTCAATCACATCAAAAAGTAGCCTATATACATTTTGTTGGAGTTCACCCTGATTACAGAAAGCAAAGCGTTGGCAAACATTTATACAATCAATTTTTT # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTTTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 9 124547-125044 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFCU010000002.1 Alkalihalobacillus clausii strain B603/Nb NODE_2_length_824433_cov_155.012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 124547 32 93.8 34 .........T.A.................... GATGACAGGGTTTAATGATACAAATATCCTCCCT 124613 32 93.8 35 .........T.A.................... ACCGAACTCGGTAAAGAATGAAACAATCGCTTTTC 124680 32 100.0 34 ................................ AACGATTTCCTCTTGATTGATTTTAATAATCATT 124746 32 100.0 34 ................................ TTCGCTCACGTCAGGCTTCAATGATTTTGACTGG 124812 32 100.0 34 ................................ ATTAAACAATATATCGTCGGAAATAATGCGGGTT 124878 32 100.0 37 ................................ TCAGCGCAAGTCTTTCCGTAGCCCCTACGCTGGCTAA 124947 32 100.0 34 ................................ AGGATTACCAGTCTACAAAAGATTGGACGCTTGA 125013 32 84.4 0 ........TT.A........A..........C | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 96.5 35 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : TATCTCTCCTTTCAAATCTTAACATTCTAATGAATTTTAGCAGCAGTCAATGAGAATGAATAGTCTATAATAACTTGTGTCTATATGCTATAATTAATCTAGGGAAAGTGTAACTTTTTTAACATAGCTAACCGTACTGTAAACGGGTGACCCGTTTCAACCTCTAGAAAGCAATTCATACCTCCTTTCGTCCACAACGAATATCGTTAAAACCCGATTTTAAGAACAGCCTTGATGAACAAGCGCATGTAAAAGAGCAGAAGAGAATGACATTGATTGCCCTTCTTAGTATTTAAAAGAATAGAAGTGGTGTTTTTTTGGTGCGAACCCTAAGCGCACATAAAACCCCTAGATCACCCGCACCAAAAAAGAGCCTAATTATGAAAAAGCATGTGTAAAAATGGTGAAATGTTGTCTGTGTGCCATGATAGAATAAAGGAAAAGAGCGGCTTTTTCCTATTATTGATTGTTTTACTTCCAATAATTACGGGGATTTCGCT # Right flank : CACGCTGCTGCCGTAGCAAATGAATTTAGCTCAATGGAAGAAAGAGGACGAATTATCAATTTTTTCACTTCTGTCGTCGGTCAAATGTTTCCAACGTATAGTGGGTACGCTGATTGGCTTGAATGCTGGCGCCTTATTGTTTGTTGTTGTCGCGTTTACGTTTCTGGCGGTTTCGTCATTCCTGTTTGGCTGCAACCAGCGATAGTCATTTCCGACAAGGGCACATCTTCTGGTTATGGCGTTTTTATTTTAAAATCGACACCGAGGCACTGGTTTTTACCGCTTGGCGCTAACCAATGCTGACGCCTTTCATTCAATAAAAATCATCTTTAGTAAAGCCATTAATCAAATCGATCAATCTAGATAAATGGATTGTATGCGCGTCTTCTTTACGGGTACAAAGGTAAACAGGCCGTTTAATCTCGATATCTTTTACAAGAACTTTGCCTAGTTCATTTCGGTGAATATGGTCTTTGACGGCAAGTGAGGGGGCAAGCATC # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 10 137680-137844 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFCU010000002.1 Alkalihalobacillus clausii strain B603/Nb NODE_2_length_824433_cov_155.012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 137680 32 100.0 34 ................................ AGCAGGGAGAACCTTTTCAATCGATATTCCCATA 137746 32 100.0 35 ................................ ATAATATATTCCCACCAATCTGTATCATTGACTAT 137813 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 3 32 100.0 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TATTTTTCCACTTGTCAAACGATAAACGGAATCGTTCAGGAAACCTATTTGCTTCGCAATCGTAGCAACTAAGAAGATAGAAAAGCGCTTTACATAAGCTCGGCAAGAATGGCACCGGAAGAAGCGGAAACGGTTTTCAGGCACTCGCCTAGACAGCGTTTTAATCAGGCGAGAATCAGGCCCAAATTCACACATATATCAAACAATAATGGCGAAACAGATACACAACCTCATGTGGGGAAGAAGAAATGGTTAGAGGAGCTCCATCAATCGTTTCCTTGTGAGCATTCAGTATGATTAAAGAAGATCAAAAAACACTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAAATATGAAATAATATGTGTAATGATGGTAAAATGCTGTCTGTATGCCATGATAGAATAAAAGAAAGGAGCGGCATTTTCCTATACTTGTTGTTTTCCTGTCAATAAATAGGGGAATTTCGCT # Right flank : TCAACAACAGGTCAAGTTGGGCATGGTACTGTCTTTGTCGCACTCTTCGTAAGTGCGTGCTCGTTCGTATGCAACCTAATAACCAGTAGGTTATGGACGTAAGGCATTTGGGGGAGGTGGATGTGCCATAAAACGAAAACCAGTAGTTTTAGGTGTAGGCGGGCTTCTAGTAATTGGTATGGCTGTAAGTGCAGTCATCTTATTGAATGCGGACAAGGATTCTGTGCCAGGGAGAACCCAATTAAAAGAGAATGAAAGAGACTCGAGTGATTATTGGACCGCAGACAACATGAAAAAAGCTGTTCCGGGGGCAGGAATGGAGGACTAACGCCTGCTCCTCGAACAGCTTTTGCTAGCTAGTTGGTGTTTGGTTTCGTTCGTTATTTTTTTCTGAACTGGTGTTTAAAACGGTTAAACGGGGTGAAGTATGAAACGGCGTAGTCTAAGTTAATAAGCTCGCTGTATTCAAAGACGCGCCCGTCGTTAAGAATGCCGCGATT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 11 202431-202729 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFCU010000002.1 Alkalihalobacillus clausii strain B603/Nb NODE_2_length_824433_cov_155.012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 202431 32 100.0 34 ................................ TTAAAATGTGGCGTCCTAGCGGCGCCTTATACAC 202497 32 100.0 36 ................................ GCTAGTTTAGCTCGCTCAGACAGAGATAGAAATACG 202565 32 100.0 35 ................................ GAATGCTGAAAAGTAGTAATTCCAAGCGGGTAATC 202632 32 96.9 33 ........................G....... TCCTTCTGAGGCTGAACAGCTGGCGTCTGCCAT 202697 32 93.8 0 ..............................TC | A [202723] ========== ====== ====== ====== ================================ ==================================== ================== 5 32 98.1 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TTCCGCGGTGAATAAGATAATGAATGGTGTCGGCATCGTTCTTATTTCAGGCTTGCTTAACTATCCATTGACGTACCTGCTAGGGACTGAAAAATCGGATGGCATCCTTGTTTTTAGCATCATGGCTGCAGTCGGGTTGTTTTTACTAAGTTCTTGGCTATTTGAAATTTTTCTAGGCGCTGTTTCCTTTGATGCACTACAAGGGATGAATCTAGACAAGCTGTTCTCTGGAAGTTTTTTAGCGGTCACGTTTGTGCTATTCATGGCCTCCTACGTAATTGCACTGCAAGTGTATAAAAGGAAAGAATTCTAAGCGAGTAGGTGCGAACCCCAAGCGCACATGAAATCCCAGGGAGGTTCGCACCAAAATGCACTTTTAATATGTAATAATGTGTGTAAAAATGAATTAATGTGAGTGGGACCACATGGTAAAATAGGAGAGAAAAACGAAATTCACGCTTTTTTGGATGTTTCATTCCATAAATTCGTTGAAATTCGCT # Right flank : CGCGCTCTTCTCAGCTGCCAAACGTTGGTAGTCGCACTCTTCATGCGTGCACACATGAAGAGAAGAACGCCCGGTTAGACTGAATCACCACCATCTATACAGCAGCCAAAACCCTTATTTTACAGCGTTTTGGTTTGTTTTGTTGGGCTGCTTGACAAGGTATGGCTATGTTCTGTAAAGTAGTTATCACACTAACTACTTAGAGGTGCTGATATGGAAGAGGCAGTCATTCAGGAGCTGCAAAAGCACGGTTTTTCCAAATATGAGTCAAAAGCGTATATTGGGTTATTAAAGGCGCCAGCGATTACAGGTTATGAATTAAGCAAGCGCTCAGGCGTGCCTCGGTCGATGATTTATGAAGTGCTTGGCAAGTTGCTCGATAAAGGGGCTGTGCATACCGTGCCCGCTGACCCAATTGTCTATAAGCCAGTGGATCCGCGGCAGCTATTGACGAAAATGAGGGAAGATCTTGATGCTTCTTTGACCTCATTAGAGGATTC # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //