Array 1 2384430-2382678 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022954.1 Lacticaseibacillus paracasei subsp. paracasei strain IBB3423 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2384429 36 100.0 30 .................................... AAGTATCCCGACTGATTGGCGAGTATGTTT 2384363 36 100.0 30 .................................... TTGGCTATTAAGCAGTGACGACTGGTACAC 2384297 36 100.0 30 .................................... CTATTGGCTTGTAAGACTGGAATCAGTGCC 2384231 36 100.0 30 .................................... ATTTACCCCTATCAATAGGTATCTGCGCGG 2384165 36 100.0 30 .................................... CTACTCCCCGCCAGGTTCATACTGTCAGCG 2384099 36 100.0 30 .................................... GCTGGGAGCAATCGAAACATCTCAATCTAT 2384033 36 100.0 30 .................................... AAACAATGTCTTCTATCTGGAAGAATATTG 2383967 36 100.0 30 .................................... ATTGGTTCGTAGCTTTGCGCTTCCAGTTAT 2383901 36 100.0 30 .................................... CCAAATTGGTTAGCACCGCTTAAAGACGAA 2383835 36 100.0 30 .................................... AAACTGCCTTCCGTTGCGATCAACTCGCGC 2383769 36 100.0 30 .................................... AAGCGTTCGCTTGCGCTGGTGTTGGTCTCG 2383703 36 100.0 30 .................................... TCGTAGCGGCTAACACGCTTATGGCTGACA 2383637 36 100.0 30 .................................... AAAATATTTCTAGAATTAGCAACTTTATGG 2383571 36 100.0 30 .................................... GATCGTTGAAGAAAGGCTGATCAATATGTT 2383505 36 100.0 30 .................................... ACATGAATTTAGATGCGCGTATTAGGATTT 2383439 36 100.0 30 .................................... CTGCTGTCGATTCGTCTAGTGATGCTGTTT 2383373 36 100.0 30 .................................... CTTTTATTCGGTTCACGTTGATATTTCAAA 2383307 36 100.0 30 .................................... GATGAACTTTATGACTTGATCCTTCACGCC 2383241 36 100.0 30 .................................... CCTAGGTCAAACGAATCTAGTCTACAACAG 2383175 36 100.0 30 .................................... CTCATCGGTCCTAGCTTTTGACAATCTCTT 2383109 36 100.0 30 .................................... CTACTTCAAAGTGAAGCCCCCCTACCAAAA 2383043 36 100.0 30 .................................... TTATCAAGAAAGTCCAGCCACGGCCTCGGG 2382977 36 100.0 30 .................................... CGCAGCAGGCATGAGCATCGTGCGTGAGAC 2382911 36 100.0 30 .................................... TTTACAGAAACACCACCTAACTTTGCTGAT 2382845 36 100.0 30 .................................... CCGGCGGTGTTGGTGTAGGGGGTTCCGCAT 2382779 36 100.0 30 .................................... TGACGATTTGGTGTTATCCAAAAGCCGACA 2382713 36 83.3 0 .......................C.....A..TTCT | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 99.4 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGTATTTACTTCAAGATCCATTTTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTTGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAAAGAAACTTGTCATTCTTACAAATGTTAGTCATTATTTAAGTGCCAGAGACTTTTCGTCGGTGACTGAACAGATCGGTGATACTGAACTTCAAGTCGTTCTCATCGAATTCTCAAAGGTGAACAGAAAGAAGTACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGACAATCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACAG # Right flank : AAACAGCAGTGATATTAAATTTAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGGTCGAGCTCTAGTTCGAGCAAGAGCAGCAGTAGTACGACCAGTCAGACGAGTAACGCTAAGGTGAAGATCAATACCGGCGCTGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //