Array 1 1144691-1143565 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADDWY010000002.1 Escherichia coli isolate SC364, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1144690 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 1144629 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 1144568 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 1144507 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 1144446 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 1144385 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 1144324 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 1144263 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 1144202 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 1144141 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 1144080 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 1144019 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 1143958 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 1143897 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 1143837 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 1143776 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 1143715 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 1143654 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 1143593 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1161746-1160192 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADDWY010000002.1 Escherichia coli isolate SC364, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1161745 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 1161684 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 1161623 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 1161562 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 1161501 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 1161440 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 1161379 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 1161318 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 1161257 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 1161196 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 1161135 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 1161074 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 1161013 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 1160952 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 1160891 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 1160830 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 1160769 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 1160708 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 1160647 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 1160586 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 1160525 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 1160464 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 1160403 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 1160342 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 1160281 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 1160220 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //