Array 1 14872-15259 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPZI01000016.1 Yersinia similis strain R819, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 14872 28 100.0 32 ............................ TTGATAAGCGGTGATAACAACATCGCCAACTT 14932 28 100.0 32 ............................ GTAATATTCACGAAGGTAAATGGCTTCTTCAA 14992 28 100.0 32 ............................ TTAATAATCTTTAGGGAAAATCAGACATCTAG 15052 28 100.0 32 ............................ ATTACCTGCTGTTTCGCGATGAATCGCCATAC 15112 28 100.0 32 ............................ ATTAAGCAACGTCAGATTAATCCATGGCGTGT 15172 28 100.0 32 ............................ TCGATGCTTTCACGGCCAGCTTTATATGCTTG 15232 27 89.3 0 .....................A.-C... | A [15253] ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCGCGGCGCTGGAGGGTGGCCAGAACTACACGGTGTAGCACCAGGTGGATCACCACAGAAATCAATAAGATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATAACTGCTCCTTTAAAACATCAATCTGACGAAAAGGCCTTAGCCTAAAGGCTATGGGCGCAGGGGGGGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCAGCAAAGGGGGAGACATATTTATATGCTGTGGTTTATGACATGGTTTGTGGGATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTTCATTGTAGTTACCGGTGGTCTAAAAAAAGGGTTTTTTCCCTATTAGCGAAAGAATTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATCCTGGACCATGCTCTGATGCTATTTGGGGATCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGATAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAAGGTAAATAGCAGGTGGCATATCAATATATACCCGTCATACTTCAAGCTGCATATGTGTTGGCTGCTTTCGTCCTCCCAGTAACTTACTGGTGTAAGCTCTTGGGGATTTACTCAGTTGCCGCCTTCTTGCAACTCGAATTATTCTGAGTATAGAGAGAGTTATTTTTTGGAATAATATCCACTTGGTACCTAAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCTCTAAGGAGTTTTATTTCCATGGAAAATGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGGGGGCGAGTTGAATATGTCACCGATGAAGGTAAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 159591-158003 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPZI01000002.1 Yersinia similis strain R819, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 159590 28 100.0 32 ............................ TAATGTAGTGAGCATCTAATAATTCTTCATCT 159530 28 100.0 32 ............................ TGTAATAATGAAAGTTAAAGTTTTGATTTCAC 159470 28 100.0 30 ............................ GCTTAAGCCCGTCTCGCGTTCTATCAAGAT 159412 28 100.0 32 ............................ AGCTACGCGAGTATGTTGAAGATTTTTATTGG 159352 28 100.0 32 ............................ TTAAGAACACCGACCCCCGGTGCGCGAGCAGA 159292 28 100.0 32 ............................ GTTCATTGTGTAGCGCGGCTCGTAGTCTCCCT 159232 28 100.0 33 ............................ CTCAATAACATCAACGCTAATTTCTTGCATTGT 159171 28 100.0 32 ............................ ATATATGACTCGATAACTTCTTTAGTTGCTGG 159111 28 100.0 32 ............................ ATGCATATCCATCTCTAATTCAACTTGACGCG 159051 28 96.4 32 C........................... TTGATTGAAGCTATGTAATTGGGCGCTGCATC 158991 28 100.0 32 ............................ AATTAAGGAACTGCCAAGGCTCATCAGCCTTT 158931 28 100.0 32 ............................ AATAATTAAAGCCTTAGTAATGGCTCTAACTG 158871 28 100.0 32 ............................ GGTATTCTGCCGCGAGTTAGCCAACTGGCAAC 158811 28 100.0 32 ............................ AACGGAAGAACAATGGATGGCGCTGGCTGCGT 158751 28 100.0 32 ............................ AGCGTGCATTGACGTGATTAACCCATCATGAC 158691 28 100.0 32 ............................ CTCGCCATTGCCGGTAATTCTTACATTAAAAT 158631 28 100.0 32 ............................ AGCAGGAACAGACTGTTGTGACGGATAATAAC 158571 28 100.0 32 ............................ TTGTGAGCTACTTGTCAGCTACTAACAGTTAT 158511 28 100.0 32 ............................ GTCAGCGTCATGACAAACGGGCAGGGGATGCT 158451 28 100.0 32 ............................ TATGAAATGTATGTAGAAAAAGAATGGGTGAT 158391 28 100.0 32 ............................ AACCATCCGGTATCTCCAGAGAGTTCAACCGT 158331 28 100.0 32 ............................ ATCGAACCAAGCCAAAACCCCCAATCCCCGCC 158271 28 100.0 33 ............................ TGACTTCTCACCCAATACGGTGACTTCCGAGGC 158210 28 100.0 32 ............................ CTCCCGGTTGGGTGGGCGTTCGTTGTGTGAAT 158150 28 100.0 32 ............................ TGAAAGCCATAAGTTGCAGGGCGGAAGTCGTA 158090 28 100.0 32 ............................ TGTTGATACTATATTCATTCAATAACGGGTAG 158030 27 85.7 0 .................T...CC.-... | T [158005] ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TAGGCTAGAAAAATCAATCGAGGTGATGAACCCTGGCAGGTAGACTATCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCGCACCAAGCAATGCCGTACCTAATCCGCAATAGACGATACCGCGTAACCGCACCAATTAGCCAAGAGTAGAGACCCACAGCCCCGGCAATGGAAGCAATTTGGCTGGCGGCAACCAACCGGAACCCTAAATAGTGCCCATTCCAATAAACGTCAGGTCGATGAGCGCCAGCTGTTTTTTAAATTTGCCCTGGACAGGCCAGAAACATTGGCCGCAGCTCCGCCGTTCTCCTCAGAAGAATAATCATTAGGATCCGGTTACATCCCCATAGATTCTTGTGACCCTCTTTTTTCCACTATTACTAACTTATTGATTTTTATGCTTCTCAGGTGTTTCACTAAAAAAAGGGTTTTTACGCATTTTTCGCAATTGCTAATTGATAAATATCAGCTTATCCGTATTATCTTACT # Right flank : TCTCAGCTATCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGTTCAGGGCTAAGCGCTGAACGGCGATGCTGTAACCAGCGCTGTTGCTCACGGTCATTCAAGGTATTCGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCGGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCGGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGCAACCGTGAATGGCTCCGCTTGTGCAAACAGCGCGACCACTCTTTCACGCACCTGTGGGTTTTGACGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //