Array 1 2210046-2210279 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOP010000001.1 Bartonella sp. M0176 NODE_1_length_2469954_cov_257.896225, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2210046 36 88.9 30 ACA..C.............................. CCGAAGCCCGAACGTTGTTCGAGAGCTTCA 2210112 36 100.0 30 .................................... TGGCTGAAATCGCCTGTGAAATTTCGATCT 2210178 36 100.0 30 .................................... ACGCCACCAAAACACTAAGGGCGGGCGCGT 2210244 36 75.0 0 .A..T.....A...C...........G..G.G.TT. | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 91.0 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GCTCGGCATGAAGTTCGGGGCAAAAGAAGTTTATGCCCGTTTCGGCTTTCGCAAAGTGTTGATGGCGGGTTCTCTCGTCTCGGCAATGTTTACCGCTTCCAATGGCTTGTTTTACCCCACCACGCCCTATTTGCTGATGATTATCGTGCTCCTGTTCGGCGGCTTTTTGCGCTCGCTTTTCTTCTCCGGTGTCAATGCGCTTGCCTTTTCCGATATTGCCAAAGAAGACATCAGTCAGGCAACGCCGATTGCCGCTGTTGCCCAACAGGCTTCAATGGCGCTCGGCATTGCAATTGCTGGCGCGGTTCTGGAAATTGCGAGCTCCTTTCACGACAATATATTGAAACTTGGCGATTTTCATACGGGCTTTTTCGTCGTCGGCTTCATCTCGGCACTTGCTTTCTTCATCTTCCGCACATTGCCACGTGATGCAGGCCATGCCTTGAACGAAAAAAGCAAACAGTCCACCGCACAACACTTATGAAACCGAAACATCTTCT # Right flank : CGTCCGGAGACTTCATACATGGCTACCGATCGTTGCTATTTGACCAAATTTTTTGACCTGAAACAACGCTGTTTGCGGCTTCAAGTTTTTCTGGTTTTAGTGCTCTGTTGTCTCGCGATAACGAAGTCGAGTGGAATTACTCTTAACATCTTCAAGTCTTTCAAGGCTCATGACTCGACCTCGTTCTCTACAGATCCCGTCTTCACCAGCACTCTCACCGCAACGCTACCCGATTATCCATTCTCAGTCATAATATTCCCGTTTCACGGGATAGGAGTTATTTTACGATTTTTCCGAAGTTTCAACGCTGATGTTGTGAGTTCTCCGCATATGAGCGCAATAAAAGAGTAAAAGCCCCATCCAATCCAATTTATATTTTATACTAGAGCGGTAATTAATTATGAATACAAAGACTAAGCTTGATGCTTTAACGTCTCTACGATTTTTTGCTTGCTTAATGATTATTTTCCATCATTGTTCGACAACATTTTTCGGAGAGA # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 2211924-2212488 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOP010000001.1 Bartonella sp. M0176 NODE_1_length_2469954_cov_257.896225, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2211924 36 94.4 30 .C.T................................ GCACTGGAGTGCCACTGGTTTTTCCCCGAT 2211990 36 97.2 30 ...................................T TCTTTTGCAACTTTGGGAGCAGTGTCAGCC 2212056 36 100.0 31 .................................... CATCGGCAACGAATGGTCCGCGCCCATCGCA 2212123 36 100.0 31 .................................... CGCAGCGATTAGCGAGCTTTCAGTCACAAAT 2212190 36 100.0 29 .................................... CGACCATTCAACGTTTAATGAACAAAGCT 2212255 36 100.0 30 .................................... TGACGGTAAGCTTGCGTTTATTAACGTCTT 2212321 36 100.0 30 .................................... ATTGAACGCTCGGAGTGCAAAAGGTTTCGT 2212387 36 100.0 30 .................................... CACTGGCGTTTGTCTGAACCGTTGGAGGCA 2212453 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 99.1 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : CGTCTATTTCTGATACTTTTTATAGAATATATTTTGGACCTGTTGTATATAACTGGTCAACTTTGGTGGGCGGATTTGCCGTAATGGCTGCTGTAATCTATTTTTTTGCACAAGATGGGTTACTCTCTCGTTTAATTTCCAATAAGTTATTTGTTACATTAGGTGAAATAAGTTTTTCTATATATATGTGTCATCAGATAATACTGGTTTTTTTCAGTAGTCACAACGCCGTACTTTTTCGTTTTTCCGGCGGAATAAATTTTATATTATATTTTTTATATGTAATTCTTTTATCTTATGTAATATGGGTTTTTATAGAAACACCTATAAGAAAATTTATTGTAGGCGGGAAGATTGTTCATAGGTCAAATCTTATGAGCGAAACAATGAAAATTAATAGTGTTTTTAGCCTTTATTCTATTATCGCTTTGGTAGCGTTATTATCTATATCCTTCTACATACATTCGTTACTCAGGTAACTTGATGCGCTAATAGTTTCG # Right flank : CCGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTTTGACGTGCCTTTCACGTTTTACTTGAAAATCTAACAATATTTTCACATAAGCACACGATCAATTTGCTTGTCCCGTAAGGCAAAAAAAATATCGAAATTTCATCGTTCGGGCAAGGTAGAAGTGATCTTACCAACACAGGATAAGCCGGCATGTTCGGGCTTTTTTTTACAAAGACCTCAAGCAATTTTGCCCCCCACGGTTTTCGATTTTTTAGGAAAGCTTTTGATAATATACCGGTGAATGCGTCGTGCTACTTAACAAGAAGTCCGCTTTGATAAAGCAGACTTTAAGACAGCGTGATAAACCTTAAGACAGCGAGTTAAACCGGTTTGTCGCATCCGTTTTGCTTTTGTCAATTTTTAAGCGTGGCTAAAATGAAAAAGCCTGCACCACTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 3 2215344-2215776 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOP010000001.1 Bartonella sp. M0176 NODE_1_length_2469954_cov_257.896225, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2215344 36 83.3 30 .....................T.........GTGTT CAGGCTGCAATAATGGCTTTCTTGACCATG 2215410 36 75.0 29 C....A..C...T...G....A...G...A....T. TGGCCAAGTTCTGATCTCTGAAGTCGTTT T,G [2215433,2215435] 2215477 36 100.0 30 .................................... GCTTTCGTGCTTTCGCGTTCATAACGGTTC 2215543 36 100.0 29 .................................... TTGATTGTTCTGCAAATGACTCCCGTGTG 2215608 36 100.0 30 .................................... AAAAGATAATAATATCAAAGCATTTTACGT 2215674 36 100.0 31 .................................... AAAGAAAATATCGTGACGAAATTGTTAGATT 2215741 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 7 36 94.0 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GCTTTAAAAAACCGGAAGGCTTTTTGTGAATTAACCGGCAATCATGGCAAAAAACCGGAAGCTCTCTAAAACAAATAATTTTTTGTCGGGCAAACAGCAATGAACTGGAAAAACTCTGATGCGTTTTTTTAAAATGCGCCTATGGCCCCGCGCAAAAATGAACAAAACAAAGTTGAAATGGTGAGCGGAATTTTCCAAAAAATCAAAAAAGGGGCTTGTGTCAAAGCCAATTGCCAGCTATTTAGCCGCTAACGCGCTCGGATGTTTGTTTAACAAACAAAGTTCGCCTTTTATGGAGAGGTGGCTGAGTGGTTGAAAGCACCGCACTCGAAATGCGGCATAGGGGCAACTCTATCGGGGGTTCAAATCCCTCCCTCTCCGCCATGATTTTGCTTTTCTTTGAAACGACTTCTTTAGTTATGCGCCCGTTCGGAATGGCCGCGCTTGACCGCTTGTTCCAATCTGATAGACTATTAGCTGTTAGTTTATTGACACTTTTA # Right flank : CCGATATCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTTGACGTGCCTTTCACGTTTTTCCTAAAAATCTAACAAGATTTTCACATAAGCGCACGATCAATTTGCTTGTCCCTTAAGGCAAAAAAATATCGAACTTTCATCGTTCAGGCAAAGGTGTTTTAATCCGTAAACGTAAGCATCATATCAAAGCGACATCGGAAATTTATTCCTCAATCACTGAACACGCAATTCCGGATGCCGACTTTTTAAAAATCAAAATGGCTATGTTTCCGCATTCAATTATTATGGCAGTAAACATTGGCTAAGCGATCTGCAAAAGACACGCTCGGAAGTAATATTTATAACGACTTTACTTCAAGCGATGCCGGAAATTTTGAGAAAGCAAAAAAAGAAAAAATTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 4 2216396-2216629 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOP010000001.1 Bartonella sp. M0176 NODE_1_length_2469954_cov_257.896225, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2216396 36 94.4 30 A.....................C............. CTCTCCTTTATTTTATCCGCGTTGTCCACG 2216462 36 100.0 30 .................................... ATTTGATTTGGTCGAGCGTTCGCAAGCCTA 2216528 36 100.0 30 .................................... TCTTCCGGAGCGCCCATGAGTGCCGCATTA 2216594 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 98.6 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TTTCCTAAAAATCTAACAAGATTTTCACATAAGCGCACGATCAATTTGCTTGTCCCTTAAGGCAAAAAAATATCGAACTTTCATCGTTCAGGCAAAGGTGTTTTAATCCGTAAACGTAAGCATCATATCAAAGCGACATCGGAAATTTATTCCTCAATCACTGAACACGCAATTCCGGATGCCGACTTTTTAAAAATCAAAATGGCTATGTTTCCGCATTCAATTATTATGGCAGTAAACATTGGCTAAGCGATCTGCAAAAGACACGCTCGGAAGTAATATTTATAACGACTTTACTTCAAGCGATGCCGGAAATTTTGAGAAAGCAAAAAAAGAAAAAATTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCGGTGTCCAAGAAAAATATAATGGGATTGAAAAGTATAATCAACGAACAACCTAATTAAGGAAGTAAAGATTGAGTATAGCGACGTTTTACCAGCGTTCT # Right flank : CCGATATCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAATGCCGTTTTTCATTAAAATAACACTGGTAATTTTCGATTTTTTTGACGTGTCTTTCACGTTTTCCCTGAAAATCTAACCATATTTTCACATTGCTTGGCAATTCTGAAAGGTGGTTAAATCTCTCACCGTTTGAAACACCTTGGAACACCTTTAAAATTAGCATTTGCTAACAACGAACAACCTATAATCAGGCCTTATAGTCTCTGCTGTTCCAGAAGACACTTATATTCCCGATGAAACCGGAAGATTGACGATGATGAGCCAGTATCAAAGCAAAAAACGGGTAACCGATATTCGATAGAGAAAAAACCTGCCGCAAGCCACGACAATTCACGAAGTATAAAACGCACAAATCACGGTAAAGGCAAGCAAAAGAAGTATATCACAGAAAGGAAAGTAACACGCCGGGGGGCCGGAAATGCAATCCCCACATCGCTAAA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 5 2217246-2217678 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOP010000001.1 Bartonella sp. M0176 NODE_1_length_2469954_cov_257.896225, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2217246 36 94.4 30 A.....................C............. CTCTCCTTTATTTTATCCGCGTTGTCCACG 2217312 36 100.0 30 .................................... TCAGTTGCAAATAGTGTCTTTGTAAAATTC 2217378 36 100.0 31 .................................... AAACAATACAACAAAATCGCACGGAAACTTA 2217445 36 97.2 30 ..............A..................... CGGCCGCGCCACTCAAATGGCTGTTGTTGC 2217511 36 100.0 30 .................................... AACTACGACGAACATGTCGCAGGTCTTTTT 2217577 36 100.0 30 .................................... TGAGCGAATTTCAATTGCTTGCAAAGCATA 2217643 36 97.2 0 ...................C................ | ========== ====== ====== ====== ==================================== =============================== ================== 7 36 98.4 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GTTTTCCCTGAAAATCTAACCATATTTTCACATTGCTTGGCAATTCTGAAAGGTGGTTAAATCTCTCACCGTTTGAAACACCTTGGAACACCTTTAAAATTAGCATTTGCTAACAACGAACAACCTATAATCAGGCCTTATAGTCTCTGCTGTTCCAGAAGACACTTATATTCCCGATGAAACCGGAAGATTGACGATGATGAGCCAGTATCAAAGCAAAAAACGGGTAACCGATATTCGATAGAGAAAAAACCTGCCGCAAGCCACGACAATTCACGAAGTATAAAACGCACAAATCACGGTAAAGGCAAGCAAAAGAAGTATATCACAGAAAGGAAAGTAACACGCCGGGGGGCCGGAAATGCAATCCCCACATCGCTAAAAGCCATGGCGTTCCTTACTCGGCGCATCTTAAATATAACAGCATAAGAGGAACAAATCGACGAATAACATAATGAGGTAAGTAAAGATTGAGTATAGCGACGTTTTACCAGCGTTCT # Right flank : CCGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTTAAAAAAAATGCTGTTTTTCATTAAAATAACACCAGTTGGGCGGGATTTTTTTGACGTTTCCTACGTGCCTGATCGGAAAATCTTACGATATTTTCATATTGCTTGTCGGTAAATTGGAAAATATAGATGTTCCCTCGTTCAGGCAAGGAGGATTCGATCTTCCTGACATAAGATTCGAATTGTTCTTTTCCATTACAGAAACGCAGATAATTCGAGAACTGGCTCATCTCGAAGCCAATATCCAACAAAAATTGTCTGAATTTCGTTGCGTCGTGGCGCTGTTTTCTTGTCTCTACCGGTAAGTCGAAAGTAACTCATATCCACATTAATCGATACCCGCTTAAATGTTTAGGACCCGATGTTGCACGCTCAAGATAGGCTGTCATAATTGTCATTTTCTCCCCATGCGTCATCAATTTGGACCGGATCGTTTTGCAAAGAAAAAAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //