Array 1 272105-273632 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFKC010000004.1 Cronobacter sakazakii strain Crono12-YL Scaffold4_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 272105 28 100.0 32 ............................ CATTTTCCCCATAAATGCCGCAAACCCCATCT 272165 28 100.0 32 ............................ TGCCTGACCTGATGAAGGTGCGCGGCTCAATG 272225 28 100.0 32 ............................ GTCTCCGCCAGCGCGCCCCAGCCCTGCGCCGC 272285 28 96.4 32 .....................C...... CACTGATAGAGGCGCAGCTCGCGCATAACCTC 272345 28 100.0 32 ............................ TCTCCAGTGCCATCCTCAGCCCCGGCGCTATC 272405 28 100.0 32 ............................ AAAAACGTTTTGCCAGACCTGGCGGATGAGGC 272465 28 100.0 32 ............................ AAAACAATATGGCGAGCACGGCGGTTGCGGGA 272525 28 100.0 32 ............................ GTTGCCCGCTGGTCAAGAATTTTCAACGACAC 272585 28 100.0 32 ............................ ACCTGTTGCGCGTTCTGCGCGCGGGCCTGCGC 272645 28 100.0 32 ............................ AGGGAGGACACGCGGCGGCCGTCAACGTAGCG 272705 28 100.0 32 ............................ AGCGCGAGCTTGACATGTTAAATATCTAAGGA 272765 28 100.0 32 ............................ CGTGCAGAACTGACCTCAACGCGCGCCGCGAC 272825 28 100.0 32 ............................ TGGCTGAATGCGTAGCTGAACGTTGTTCTCTC 272885 28 100.0 32 ............................ ACGTCAGCAACGGTAATTTCGCTATTTTTAAT 272945 28 100.0 32 ............................ TCACCCACACTCCACGGCCCCAGGTGTAGCGA 273005 28 100.0 32 ............................ GTCGGCCCGCTGTAAATCAGGGTCCAGACGCC 273065 28 100.0 32 ............................ AGTTCGCGCACGAAGTCGGCTGTATAAAGCAC 273125 28 100.0 32 ............................ GCTGAGCAGATATCCGAAACTGACCGCCGTTG 273185 28 100.0 32 ............................ ATCTGTATCAGCCCAGGAACCGTAGTCGTCGT 273245 28 96.4 32 A........................... GGTGCGCTTAGTGCCCTGGACGGCCTCGATAT 273305 28 96.4 32 A........................... AGGATCACTCGATAAACGGCGGCGCAGACGTG 273365 28 96.4 32 A........................... TCCGATGCGGCTAAACAGGCGTATCAGGACAT 273425 28 96.4 32 A........................... AACAGCTCGGCGTCCTGGTAAATTCGTTCCCC 273485 28 100.0 32 ............................ AAACCTCGACCGCGATACTGGCAAGCTCGACA 273545 28 100.0 32 ............................ TGTAGGGGCGTACCCCTCCCGGCCAAAAAAAA 273605 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCGAGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAAGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCCT # Right flank : AACTCCCAGCTACCCGCCGGGGTTGGATACGCCGTCCACTGCACACCCGCAGTAAAAAATTTTAAGCCCGAAATAATGCTTTTATTATCGTTATATAAATAACGCCGCAATATCACGGTAAAATTATCCATAAAATTTATGGTTTCTGCTGTGCGAGCTTTGCTGGAAAATTCGCGCCAGATATTAATGCGGTGCTAATTAGCCCATATAACGGCGATGACACGTAAGAACCACATTAACTACAGACATTTGCAGGTTTATTGCCTGTCACAGGGTGTCGTTAGAGTAATCAGTAATTATGTTTGATTGCAGATAATAGCGAAGGCCCTATAAAAGTTGACATTTAGTGTCATTCATTAATAAAGCGCGGGAAATGAAAGGGATGTCACGGCATATTTAAAGGCTTAATAATAGACTCATCTCTTATTTATTTTTCAAAGAAATATAAATACAGGAATCATCTAACGGAATGATGTAATGGATCGGAATGCCGTAACGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 282342-283810 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFKC010000004.1 Cronobacter sakazakii strain Crono12-YL Scaffold4_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 282342 28 100.0 32 ............................ GCTCAGGACCAATCAGACCGATTATTAATCCT 282402 28 100.0 32 ............................ GAGCGAAGTCCTGGGCTATATGCCGCGCTCCC 282462 28 100.0 32 ............................ GAGCACGCCCTGGTAGCCCGCGTTCTGCCCGA 282522 28 100.0 33 ............................ TTGTAACAGGGATGGGTGAATATCTCGCGATTA 282583 28 100.0 32 ............................ CATGCCGAGCGGACCGCATTGCGGATCCGCTC 282643 28 100.0 32 ............................ TAACGGGTATTCCATTTTCGCGTCCAGCCACG 282703 28 100.0 32 ............................ ACATCGAAAACGTCAATAATCTCGTCGAGGGT 282763 28 100.0 32 ............................ TCCTGTAGAACCGCACCCGCTGCGGTGTCCTG 282823 28 100.0 32 ............................ CGGTTCGCTCAATAATATTCACTACGAACTCT 282883 28 100.0 32 ............................ AAAAATGACAGACGATCAGCATGCAAAATTTT 282943 28 100.0 32 ............................ AACGCGTCCGAAAAATCTTTCAGCTCGCTTTC 283003 28 100.0 32 ............................ GATCGTTTCCGCCTAGGTAATTTTTTTTAGCT 283063 28 100.0 32 ............................ GCGCGAAGTCCTGGGCTATATGCCACGCTCCC 283123 28 100.0 32 ............................ ATACCCCGAACTTCTCAATCAGAGGAATGAGC 283183 28 100.0 32 ............................ TCCATCTTGTCCAGGCGCTTTTCCATCTCGTC 283243 28 100.0 32 ............................ ATCGCGTGTTGATGCTGGCCGCAGCATCTGCA 283303 28 100.0 32 ............................ AGGGCGCTCAGATTGCCGTCATATTCGTTCTT 283363 28 100.0 32 ............................ TGCACGCCGGCGTTTTGTTTAAACGTCGCGTT 283423 28 100.0 32 ............................ GGCATTACGCCGGGTGAGGTTAAGTTCCGCTA 283483 28 100.0 32 ............................ TCAGAATGGCCCAGCGATGACGGCTACCGAAG 283543 28 100.0 32 ............................ GTACGACCCGCAGATTGCTGAGTACGAGCAAA 283603 28 100.0 32 ............................ AGCGCTGCTATCAGCTCAAGAACGGCAGCGGG 283663 28 100.0 32 ............................ AATGGGGTCATTATCGGTTCCTCCGTGATGCC 283723 28 96.4 31 ......................A..... TCGAACACAGCGACGCCGTTCCCGTCGCCGC 283782 27 92.9 0 ........................-..T | T,G [283802,283805] ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGCGCTGGCGGAATTAGAGGCCATGCGCTGGCGGGCGGGTTTGCAGGATTACTGCCAGAGCAGCGCGATATTACCCGTGCCACTGGTTCAGGGCTGGCGCACCGTGACGCGCGTGCAGGTGAAAAGCAACCCCGAACGCCTGCTGCGCCGCTCAGTGCGTAAAGGCTGGCTGACTGAAGAAGAGGCACAGCAGCGGCTTTCTGGTTTACAGGAGCAACAAACCGCTCTGCCCTGGATTCAGGTTAAAAGCCTCTCCAGCGGCCAGCAATACCGGCTGTTTATCCAGCACGGCGCACTTCAGCCCACGCCCGTCAGCGGCACCTTCAGCAGTTACGGGTTAAGCGCCAGCGCCACCATCCCCTGGTTCTGACCCTTTTTAAATACGTCTCGCTAACCTGTTGATTTTTATAATGGGTTAGTGAGGCGTTGAAAAAAGGGTTTTAAGAAGTAAGCAGCGTTTATATTTTTATAAACAATGGGTTAAGAATTTTTGTCTTCA # Right flank : TCACAGCGAATTCCCTCGCCGTCACACTTGACCTTCCTGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCCGGCAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGATATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGAATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 190679-191561 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFKC010000006.1 Cronobacter sakazakii strain Crono12-YL Scaffold6_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 190679 29 100.0 32 ............................. ATCGCGCGGCTTGCAACAACTCGATAATTTCA 190740 29 100.0 32 ............................. CGCGGCATAAACGTGACGCAACGGGCAATAAA 190801 29 100.0 32 ............................. GTACGGCAGGAAGGCAGCCTCTTCTGTACTTC 190862 29 96.6 32 ............................A ATTTACAGCTGACGGAGCTGGTGCAGACGCAC 190923 29 100.0 32 ............................. CTCAGTGACGTATTCGCGGATACGCTGGCGAT 190984 29 100.0 32 ............................. AGCTGCTTAACGGTGCCTTTCCGGTTCGTTTC 191045 29 100.0 32 ............................. ATGCAGCGAGTCACGAAGCCTATCACGGACTG 191106 29 100.0 32 ............................. ATGCTGGCTGGCAACCCTGGCAAACGCGCAAT 191167 29 100.0 32 ............................. TTTTCGAAATTGAGCATATTTAACCTATGATT 191228 29 93.1 32 .T.........A................. AGCGTACCTGTCCGTAGATATCCGGTTTGGCT 191289 29 93.1 32 .T.........A................. TCTCCTGTACTGTTGTTGGCGTAACACAGTTG 191350 29 93.1 32 .T.........A................. AATAGCCTAATCAACACTTTTGTCCAGATGGG 191411 29 93.1 32 .T.........A................. ATTTTCGAGCAAAGAGGCAACGGGTCTTCATC 191472 29 93.1 32 .T.........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 191533 29 96.6 0 ......................C...... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 97.2 32 CCGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCTGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGAGTTGTTGTAAAAATGTTGGTAGGATGTAGACGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : GAACGCTGACCTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCCGG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : GTTCCCCGCACGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 217952-218407 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFKC010000006.1 Cronobacter sakazakii strain Crono12-YL Scaffold6_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 217952 29 100.0 32 ............................. TATCAATGCTTACTGATACTTGATGAATTTCC 218013 29 100.0 32 ............................. CTGTCTCTTAGCTTGCGTAATATTACCTGATA 218074 29 100.0 32 ............................. ATACAGCCCCTTTCTTAAGGGGCTTTTTTTTA 218135 29 100.0 32 ............................. CGAGGAACGAACAGCGCGGCTGAGGAGCGGAT 218196 29 100.0 32 ............................. GTCGTGTTTAAACGCGGCGTGGTGCGGCGAGC 218257 29 100.0 32 ............................. CGATTGATGAAGTGGTGATTATCCCAGCAAGC 218318 29 100.0 32 ............................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 218379 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGATGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTTCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCTTTTTTATCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTATTGAACATGAATAAAACCATTTGCACCTTACTTATTACTGCCGCGTTATGTAGTACTACCGCTGTTGCCAGTGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGCACATGGGGTGATCGATTGTATGGTGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //