Array 1 36415-36774 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAJWC010000014.1 Clostridioides difficile strain clo22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 36415 29 100.0 38 ............................. ATAGAAAATGGCGATAAACCAATTCGTAGATTGGATAC 36482 29 100.0 37 ............................. ATAAACATAAAAAACATTGATAGTAATATATACTATG 36548 29 100.0 38 ............................. TTTGAACTTAGTTTCATATCATTATGATACTGCATTAG 36615 29 100.0 36 ............................. TCAGATAGACAAAAGGTTTATGAATATATAATTAAT 36680 29 100.0 37 ............................. ACGCAATTTACTTCATACCACCCATCTGCACTAAGTA 36746 29 86.2 0 ......G..............C.TA.... | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 97.7 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : CTTATTTTTAAATAAACTAATAATAAGATTAAATATAATAAATCCAACCGTTGAGCCCAAAGCACTAACAGGTACTGATGTTATATTAGAAAAATTATTCAACGCTGATAAACATACCATTACTATAGAAACTATAACTAAATAAGATATTACTGTAAAAAATGGAATTGAAATACTTATATTTAACTCTGCTTCATATTCTTTCATAATATAATTCCTTTCAAATTAATTTTATTTAACTTTATTATAGCATTTAAACATAATTAAATGTAAAAATACAGTCAGAAATTAACTAAAAATATCAATTATATGTTATGATATAATAAAAATATAAATAGTTTTGCAGTGCGCGGTATTTTTGATAAAGTGTGGCTTAAACATTGAAATATAAGGCATTGAGAGTGTGTGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCGAATTTGAGAGATTTGTATATGTGTAGGTATTGGAAATACTCAATTTATTTTGGG # Right flank : TTAAAAATACTGAAAAACACTTACTTTTGTGGTAGGTGCTTTTTTATATTCAAACCTGTGTACTTAATTGAAATATTTGGTAAAATATGTAAGAATTATATGATATAATAATTGTAGCAAGGAAAATAAAATCGAAAAGCTAAGGGTGATTTTCTCATATAAACGCCAAATTCCAATATAGGAAGGAGGTGAATTTATATGTTAATTAACTTTTTATTGAGTATAGTAGCTGGAATTGTGTCAGCTTACATTTACGAGAAAATAAAAAATCACCCAAACGCCAATAAGGGTGATTTAAAGAAATAACTTTTAAATTCTAATCAATTAGAGAAATTCACCTTTTACAAAGTAAATTTTATCTCCTTGCTATTATTATATCACAAATTTATACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGAAATTAAGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 37373-37599 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAJWC010000014.1 Clostridioides difficile strain clo22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 37373 29 100.0 38 ............................. AACTCTAGTGTGTAATGACACAAGAATATTTTATTTAG 37440 29 100.0 37 ............................. AATGAATCTTAATAAAATATAACTATGTATTTTCATT 37506 29 100.0 35 ............................. GCTTGTTTAAAAATACTTTTCACAGTTCGAAGTGG 37570 28 86.2 0 ....................A.CT....- | GA [37591] Deletion [37598] ========== ====== ====== ====== ============================= ====================================== ================== 4 29 96.5 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : ATGATATAATAATTGTAGCAAGGAAAATAAAATCGAAAAGCTAAGGGTGATTTTCTCATATAAACGCCAAATTCCAATATAGGAAGGAGGTGAATTTATATGTTAATTAACTTTTTATTGAGTATAGTAGCTGGAATTGTGTCAGCTTACATTTACGAGAAAATAAAAAATCACCCAAACGCCAATAAGGGTGATTTAAAGAAATAACTTTTAAATTCTAATCAATTAGAGAAATTCACCTTTTACAAAGTAAATTTTATCTCCTTGCTATTATTATATCACAAATTTATACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGAAATTAAGGACTTGTGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCGAATTTGAGAGATTTGTATATGTGTAGGTATTGGAAATACTCAATTTATTTTGGG # Right flank : AAAGTTACAATGAGTAGAAGAAGATTTCTATTTATTGTAACTTTTTTTGTTGTAAATTTAAAATTACAATATATTATAAAAATAATTATACAAACAAGAAAATACAAAAAATTATAATTAAAAAGACGATTAATAATACACAGGAATGGAAAAAATAACCAAGAATCTACAAAATTCGATTTTTTTATTACAATTACGGTTTTTTTATTGCATATATTTAACAAAAGTATTATTATGTAAGTAAGATAATTATCAAAGACAATTCTGAATAGTCGGAAAACATTTCTAGGGATGAAAAGGTATAACTACATAGGTTTTATAAAAAAATATTAGGGATTTTTAACTAAAAATAAGAACGTAAGTTCTTGCAACAGGGGGATAGTATATGGAAAATGAAAAAGACAAACTCATCTTATCTTTAATTGAGTTGAAAATAAAGGATGAAGAAGATTATGAACTCTTTGCAAAAATGATTAAAGAAATTTATGAAAAAAATATAA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 244590-245015 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAJWC010000001.1 Clostridioides difficile strain clo22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 244590 29 100.0 36 ............................. CTGTCTATTTTAATCTTGCAAGTTTTTCACTTATGA 244655 29 100.0 37 ............................. TCAATTTACCGTTTTTTTCAAATCTCACAACATCAGA 244721 29 100.0 37 ............................. CTATCGGCTTCTTGAAAAGCCTCATCTGCTCTATTTA 244787 29 100.0 37 ............................. TTCATTAAATCCCCAACCGAATTATCTTTCAGCATTT 244853 29 100.0 39 ............................. CATGCTGATAAGAATCTCTATGAACTTCGGAGGGAACCG 244921 29 100.0 37 ............................. TTGGGTATTTTGCTAAAAATAAAGCTATTAAATTAGA 244987 29 96.6 0 .C........................... | ========== ====== ====== ====== ============================= ======================================= ================== 7 29 99.5 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GGAGTTCATGTATCAAAAAATTATCCTCCCGACGCTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAAGGCATACTAGCAAGTCTATCTGCTAGCTTAATAGTTTATATAGCTAGCAAACTATTTAGAAAGCGTAAAAAACCACTCAAAGCGGCAACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAGATTCCATAAAACTAAGTAATTTCTAAATTATGAACTCCACTCTACAGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAATTGGTATAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGGCATTGAGGACTTGTGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGATTTGTATATGTGTAGGCATTGGAAATACTCAATTTATTTTGGG # Right flank : TTGTATCCAAAAAATTACAATAATCATACGAACTGCTAATATAAGCAGTCAATATATGTGTACATTTATCCATTTTATCTCTAAACATATAAATTATTATCCCCCTAAAAAACTTTCATAAAAACAAAAAGAACAATATCTCTTTGGCAACTGGCTAACATAACTCATAAGATATTTATATAAGTCTTAGTCCCTATAGCTTTGCGTCACTAGATTTCTCTAGTTTTGCCGATTTAGTTTTATTCTATAACTAAATAATACAATAGAATTAGTTATTATTCAACAAGATTGTTTGAAAATTGAATAAATTTATAGGTATGAACGTAATTTCACACTTAAAAACAGACTAAATACGTAGAATATATAGAAAAATTTACCTGTAGTTTTTGTGATAAAAAGCTCCTATTATTAATTTAAGCTAGATAAGTTTGAGGAAGTGACATAAATTGAAAGAAGGAATATATTATGTTGAATAAAAAATTACCAGATGCAGAATTAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 326297-326517 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAJWC010000001.1 Clostridioides difficile strain clo22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 326297 24 100.0 41 ........................ CAGGTTTGATGGAAATAAAATAATAATAGAAAAAATAGAGG 326362 24 100.0 42 ........................ CAGGTACATAGCAAAAATAATTATAAGTTGGAGATTTTGTAT 326428 24 95.8 42 ....................A... CAAATATTGATATAGTAGATATAATAGAAGTTTTATTATTAG 326494 24 83.3 0 ......A.........TC..A... | ========== ====== ====== ====== ======================== ========================================== ================== 4 24 94.8 42 GTTTAAGATTAACTAAGTGGGTTT # Left flank : TTTGAAGAGAATTTTATAAGTTGTGATAAAGAAATTAAGAATATTTATGGTATAAATAAAGAAATTTTTGATGGATTGGATTTAATTTTTAATTTTGAACCTTACAAAAATATTGTTGATAGTAAGAAGGAAGCAGCTAAAATTTTTAGAGATGTTGATGTTAGTTACAAAATTATTCTGGAAGAAGATTTTTATAAGGAAGATAGGGAGTTACAACAAGATTCGATTCAAGTATCAGGGTTTATATTTAATAGATTATATTATTATGGATTAATAAGCAAAGTAGAAGGATACATGGTACTAAAATCTAGTAGTAAGTTTGAGTATAATAGTACTGTAGGCTTAATTTTGAAGTGAGCATATGTTTAAATATAATATACCTTTAGACATTGAAAATACAAAAAGTACTACTGTAAGTCCACTGTAAAAACTATTTTTTAAAAGGAAAAATAAGTTGTGAGATAGAGTGTTTACAAGTGTATATAGATAATAAATTTGAG # Right flank : TTTAAATATTCTGACTATTATATAAGGATATTATTAGCTTGAATTTAAAACCAATAATATAAAACAACAAAATATTATATTTATGATATAATAAAAGTTATGGAAAAACAGGAATATTACTATAGAGAAGAGAGGTAAACTTATGAATAATTGGATAGAAGTAACTATAAAAACAACAACAGAAGCAGTTGAACCTATAACGAATATACTATATGAACAAGGAGCTGGAGGAGCTGTAATAGAAGACCCAAAAGACTTTTTATTCCAAAAGAAAAATGAACTAGACTGGGATTATGTTGAAGAAGAAGTATTTAAAAAGAATGAAGAAGATGATGTTCTTATAAAAACTTATGTTTCTGAAGAAAAAAATGTGATGGAATTTGTCGAAATAATAAAGCAAAAAGTTTTAGGGTTAAAAGATTTTGGTATAGATATAGGTGAAGGAAGTGTATCATTGGACCAAGTAAATGAAGCTGATTGGGCAAATGCATGGAAAGCAT # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGATTAACTAAGTGGGTTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 488644-489525 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAJWC010000001.1 Clostridioides difficile strain clo22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 488644 29 100.0 37 ............................. TCAAAAGTTGCGTTTTCTTTTGCATTACCAGCAACTA 488710 29 100.0 38 ............................. ATGAAAGGATTAACAAGTAATAGATCCAATCCTTGCCA 488777 29 100.0 36 ............................. TGATGTCTGAATGCCCTCTAAATCTGTTCTGTTCCT 488842 29 100.0 36 ............................. ATTACATTTAATTTGCATTGCTTTGATGACTTCTTT 488907 29 100.0 38 ............................. GAGGAGATTCAGACAGCGACTAAAAAGACTGATATAAA 488974 29 100.0 37 ............................. AACTTTATATCTCCATTTGCATATCCATCTGATGAAC 489040 29 100.0 38 ............................. GCGTACAAGGTTGAGAAGCTCCGCAATCTCAACGTCGT 489107 29 100.0 36 ............................. CAGCCAAAAACTTCGAATTTGAACTAAAATGCGTGG 489172 29 100.0 35 ............................. TAACACTCTCTACTTGCAAATATAAATATAAACTG 489236 29 100.0 36 ............................. TTAGAATCAAAAGCACTTAATCCTAGTTCTTTCATA 489301 29 100.0 37 ............................. AAAAGTTGCACGCCTATTTGATTTTTCAATACATTAT 489367 29 100.0 36 ............................. GTTCCTGTTGTGTTTTTTACTAATCCCATTTTATAT 489432 29 100.0 36 ............................. TGCTGTGATTTCACTAATAAAACAATTAATAATTGT 489497 29 86.2 0 ................G....T.CA.... | ========== ====== ====== ====== ============================= ====================================== ================== 14 29 99.0 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : AATAATGTAGATAATGTTGAAAATTTAGAATTCAATGAGTTTGAACTTAAAACCGAAGAAGAAGAGAAGCGAGAACAAGAGAAAATAGAACAAGAAAAAAACAGTTATAATAACTACATTCAAAACAGAGTGGTTGACCCACTAGATAGAATAAAGAAACTAAAAGAGTTGCTAGATTCAGGAGCAATTACACAGGAAGAATATAATAAAAAGAAAAAAGAATTATTAGAATAGATAATATAGTAAGCACTTACAAGTATGTAGGTGCTTTTAAATTTACAAAGTATTCCATTTTAATTTTATAGTTTAGATTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGTGCGATATTTGTTACAAAGTAGGGCTTAATACTTGAAATCTAAGATGTTGAGGGTGCGTGATAAGTGTTATCAATTGCACTATTGCCCGCTCACTGCAATTTTAAGAGTATTGTATATATGTAGGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : TTAAATAAACAAAGAAAGCACTTACAAATATGTAGGTGCTTTTATTCTGCTCAAAATTGGTTGGTTGGGTAAAATAATTAGAAAAAGTTAGTAAAAACCTATTGACTGTAACTCGTTACAATATTGTTATTAATGTAACGAGTTACAGAAAAGAGGTGAATAAAATAGCAACTAAAAGTAGGGCAGAGTATATGAAAAATCGTCGAAAAGATAAAAGAGGTTTTAGTGTACTTTTAGACAAAGAAAAGTTAGATAAATTTGATGAAGTATTAGAGGAAAAGAATCTAACCAAGAAAGAATGGCTAGAAGAAAAAATCGACGAGGAACTGGAACAAAAGGAATAAAAAATAAGGGTCACTCCCACCGACCAAAGTTTGAGTAACCCCTATGACGTATACTATCGTATATCAATTATAGTATATGTCATTCCTTAAAAAAATCAATTATTAAGGAGTGTAATATTATGAAAAATGAATTAATGATGTTTGAAGGAAAAGAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 190347-190970 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAJWC010000003.1 Clostridioides difficile strain clo22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 190347 29 100.0 37 ............................. ATAAAATATAGCTAATTATTAGATTCAATTTTAATTT 190413 29 100.0 37 ............................. GTTCCAAGAATATTATTTGATAGTTTAGATGATTATT 190479 29 100.0 37 ............................. TGTAATGCAAATGAGTCTAGGCGATAAATTTTCTGAA 190545 29 100.0 37 ............................. TAATAGCAAGGGCAATAGGAGCAACAGCAGAAATTGC 190611 29 100.0 37 ............................. GCAAGTAACATTCTTCTTAAAAGTTCTTTTGGTGTTG 190677 29 100.0 37 ............................. TTTGAATTAAAATTTCTAAAAAACTAAAACTACGTTT 190743 29 100.0 38 ............................. GTAATAGCAATGGAATGGACAAGAAACACATATCGAGG 190810 29 100.0 38 ............................. ACATTTGCAATTTAATGTTAACTATCAATACCCCCAAT 190877 29 100.0 36 ............................. AACAAAAAAGATACATCTGTAACTAATTTTTATACT 190942 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ====================================== ================== 10 29 99.7 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CTATTAACTTATTAAATATCTGTAAATGAGCAGATATTTAATAAGTTAATATTTATTGTTTACATAAAATATTTGGTAAAAATAAGTAAGTTTTATATGTTATAATAGTTGTAGCAAGAATAATAATCTAAAGTGGCAAGCATGTCAGCTGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATCTCCCAAACGCCAATAAGAATGATTTAAAAAAATAATATTTTCACTTAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTATACTACAAATTGGTACAGATATTTAAAAATAATATATTCATAATATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCTTAACAGTTGAAACATAAGGCATTGAGGGTATATGATAAATATTATCATTTGCACTACTCGTGGTTCACTGCAAATTTGAGAGAATTGTATAGATGTAAGTGTTGGAAATACTCAATTTATTTTGGG # Right flank : GACAGATATAATGTCAAAATAAGGTTAGGACTTTTAAAAGCATAGCCATATCAGTAAAAATTTAATTATCATTTAAAAAATAAATTTTTATTTAAAGAATACACATAAATATTTCCAGACTCAACTCTCTTAAACTATTTTCATATCTTTTAGTAGATACCTTTGTTGTTTTTTAATCTTTAGCAACTTGTTCTTGAGTGAACCTCTTATTTTTTTTAAGTTATTTCAAGCTTTTCAAAAAATTCTCTATTTATATTCATCACACATATAATACAATTAATTCAGTTTTAATTGCCAATATTTAGTTTTTCTGTATCTGATAAACCAAGAATATAATCAGTATATAAACCAAAAATTTTAGCAAATATTATTAACCCATCGTCTCTTGTTGGTCTTTCACCAGACTCTATTCTATTCATAACACTTGTATTTATATTTGTTTTTTCAAGCAATTCTTTTTGAGAACTATTCATATTTTCCCTAATATATTTAATCCTTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 394417-395171 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAJWC010000003.1 Clostridioides difficile strain clo22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 394417 29 100.0 36 ............................. AATTTTTAGAATATTTATACATATATGATAACAAAA 394482 29 100.0 37 ............................. ACTATCTTTAGTAGTAATATTTTATGTAGCTTTACTA 394548 29 100.0 36 ............................. GATGATTGTTACTTCACAAAAGGCATAGTCGTAATT 394613 29 100.0 38 ............................. CAAAAAACCACTTTTTTATTATATGACTTTGCCAAATT 394680 29 100.0 38 ............................. TCCTATAATATTATTATATCATGACGCTACGTCAAAAG 394747 29 100.0 37 ............................. GAATATTAGCTATATTATCTTTACCTACTTGCAAGTC 394813 29 100.0 37 ............................. TTTATTTTTGTAATATAATCATTAAGTTGGAGCTCTT 394879 29 100.0 38 ............................. TAAATTACCAATATGTTAAATTTAATATTATATTGACG 394946 29 100.0 37 ............................. CGAAAAAATTCTTCTATTTATAAATTATATAATAAAG 395012 29 100.0 36 ............................. AAGTCACACCGCCCTCCACACGACACTATAATAATA 395077 29 93.1 37 .............C.........A..... AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 395143 29 69.0 0 A.....C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 96.8 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAATGTATAGAAGGGAGGTGAGTATGTATGGATAATTTTTTACAAGGTGTACTAGCAAGTTTAGTTGCCAGTTTAATAGTTTACTTAAATAGTAAATTATTTAAAAAAGTAAAAAGCCACTCTGGCAGGAGCGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTCTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAACGCTTGAAATATAAGGTGTTGAGGGCATGTGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGCATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAAGATACTAATGATAACTGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTTTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATACTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTCGCATCATTTAA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 322049-320967 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAJWC010000004.1 Clostridioides difficile strain clo22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 322048 29 100.0 37 ............................. AGAGTATTCACACATATTGTAACCTGTTCAGAATTAT 321982 29 100.0 37 ............................. CAACTTTTCAATAGTGACACTATAAACTTTGATAAGT 321916 29 100.0 36 ............................. TTGCTGATGATAGTGTGACTACTTCTATGACTACTG 321851 29 100.0 36 ............................. CCTAAAATTATAATTTTTATCTTAAATATATTATAT 321786 29 100.0 37 ............................. AGAAAGATACGATAAATAGTCGTTAACAACTCCAAAA 321720 29 100.0 38 ............................. TCATACAAAACAACAGTACCTTTCGTAAAATAACATCC 321653 29 100.0 37 ............................. ATCGATTCTATTCTTATCAGAAAGCGTTGAACGAGGA 321587 29 100.0 37 ............................. GTACGTTACAGCAGTAAACAAGCTAACTGGAACAAAC 321521 29 100.0 37 ............................. TCTTAAAACAATCGAATAAATATAATAAGATGCAACA 321455 29 100.0 36 ............................. TTATTAGTCAAATATAGTATTTTAAACAACTCCGAC 321390 29 100.0 37 ............................. ATTATTATTCCATTACTTTTAGAGATTACTTTTGCTA 321324 29 100.0 37 ............................. GTTATTGCTCCTGTCAGTATTGAATTGTTCAATTTAA 321258 29 100.0 37 ............................. TAGTTATTGCAATGCTTACGAGGTTTTTTGTGTTGTC 321192 29 100.0 37 ............................. TCTAAAAGGTCACATATATTTATTAAATCTGTTGCCG 321126 29 96.6 37 .......................A..... ATGCATTTAAATGATATGTTTGGAGAACTTTGCTATG 321060 29 100.0 36 ............................. TTACTTTAAAATATGTACCATAAAAAAATATATCAA 320995 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 17 29 99.8 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CTATTATTATATATAACTGACATTTAAGTGACATTTAAGAAAAATATAATGCCTACTTACATAAAATGGAATGTTATTTAAAGAGAACTTTGATTATATTTTCAGAAGCTTTTTTATCCATATCGTTTAAAACAAGAAAATATCTATTCATAGTTATTTTTATATTAGTATGTCCTAATCTTTTAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAATTATTAGAATAGATAATATAGTAAGTATTTACAAATATGTAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTGCAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTATCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAATTTATAAATATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTACCTTATAAATAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAGGAGATGCCCTTTGAAAATAAAAATTAAAAAATATTTAATGCTATTACAATAGGAACTAGAACTACACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAATTTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 5310-4432 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAJWC010000010.1 Clostridioides difficile strain clo22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================= ================== 5309 27 100.0 38 ........................... TTCAACTCTGCTGGTGCTGTTAATCTTCTCTTAGATTG 5244 27 100.0 39 ........................... TTGTGGTGGTATTTTTAAGTCCTAAGCATTTTCGCTTGG 5178 27 100.0 39 ........................... TAAAAAATCGTTAAGATTATTTTCTTCTTGACCAAATTG 5112 27 100.0 36 ........................... TTCATAATAATACTCTTTGACTGCATACAAAACATG 5049 27 100.0 38 ........................... TCCAGTCATGAAACCAAAAGAATTTAGACCAGATTCAG 4984 27 100.0 39 ........................... TGTAGATTCATTTAAAAAAGGGTATGAAGTAGGTCAAAG 4918 27 100.0 39 ........................... TTTCGCAACTTATGATGGTGAAATGATTACATTAACAGG 4852 27 85.2 39 .....T........AG...T....... TATATCTACATCTAAGTAATCCGCAATAGATTGAATTAA 4786 27 85.2 39 .....T........AG...T....... TGCTGTATCCTTTGCCCCTTTTGCTGCGTCACTCAAGGT 4720 27 85.2 39 .....T......A..G...T....... GTCGTTTATCATTGCTAGCCTCGCATTCGTACTGGTCAA 4654 27 85.2 39 .....T........AG...T....... GATTCGCGATACTATTTGTGCAGTATCTAAGTAGGATGG 4588 27 85.2 38 .....T........AG...T....... TCATTCACTACAAAATATATATTCTAATGTATCATTCG 4523 27 92.6 39 .....T.............T....... CAATATATATAGCAAATCTGTTATATTAACTATGAAGTG 4457 26 85.2 0 .....T.........G....C.-.... | ========== ====== ====== ====== =========================== ======================================= ================== 14 27 93.1 39 TTTTAGATTAACTATATGGAATGTAAA # Left flank : GAGTGGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGAATATGTATGGATAATTTTTTGATTGGTGTATTAGCTAGTTTAACAGCTAGTCTAATCGGTTACATAGTTTGTCTATGTATCAAAAAAGTAAAAAGCCACTCTGTGCAAGAGAGTGACTTAGATGTTGAGCTTAAATTTTCATTTAAGTTCAAAAAAAATAAGCATTAAATTGTTTAGAACTTCACTCTACTTCCAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATGTAGAGATTTTGCAGTGAGCGATATTTGTGATAAATTGAAGTTTAACAGTTGCAATATAAGGCGTTGAGGGTGTGTGATAAATGTTATCAATTGTACTACTCATGGTTCACTGCAAATTTGAGAGAGATGCGTATGTGTAGGTATTGGAAATGCCAAGTTTATTTTGGG # Right flank : ATTAAAAATAATTAAAAAACACTTACTTAGGTAGGTGTTTTTTTAATTGAAAGTAGGTGATTATAATGTAAAAATTTTACTGATATAGTATAATAATCTTATAAAATTGCGTAGGGGGTAATATTATGGGATTATTCGGAAGTAAAGATAATTGTTGTATTTGTGGAGAAAAAGGAAAACAAAAAATAGCTGATGGATGGTTGTGTAAAGAGTGTTTTAAGAAATATGCAGTTGCCACCTTTACTCCAGGAAATACTTTATATCGTGGGTTACCAACTAAATTAGAGGTAGAGAAGGCTATTGAATCAAAAGATGATAAAGAAAAAGAGCTTAAAAATTTTAATCCTACAAAAAAAATATTAAAATTTATGGAATTTGATGATAATAATAAGAAATTTATTGTTTTAAATGGGTTTAATAGAGAAAAAGTGAATTTAAGTGTTTATAATTACAGTGATGTTATAGAATATGAACTTCTAGAAAATGGCGAAACTGTGACT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTAGATTAACTATATGGAATGTAAA # Alternate repeat : TTTTATATTAACTAAGTGGTATGTAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.48%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 96639-95030 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAJWC010000010.1 Clostridioides difficile strain clo22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 96638 29 100.0 36 ............................. CAGATAGAAGTTGAAAGAGTGAGTGTGCCAGGCAGG 96573 29 100.0 38 ............................. GTATTACTCCCAATTATGAACATAGGATATAGTCTTTT 96506 29 100.0 38 ............................. ATTGCTCTAGCGATTATGGGTGTTTTTCTTGTTTGGAA 96439 29 100.0 36 ............................. ATCATAAGAACCAGGAACATATGGCAAACTATAAGG 96374 29 100.0 37 ............................. GTTACAAAAGAATTAAATATAAAAAATATAGAAGTTG 96308 29 100.0 35 ............................. TCAGAATATAATGAACTTGAAGTAAATAAGTTCAT 96244 29 100.0 36 ............................. AATAAAAGATGGCTGGGTTTTAATAATTCCTTAAGC 96179 29 100.0 38 ............................. TTGACCTACTTCATCCACTGCACCAGATTCTAATTCTA 96112 29 100.0 35 ............................. ATACTTGGTCAATACATTTCAAAAGTTGCAACAGA 96048 29 100.0 36 ............................. CTGGTTATTGTCTCATCACCATTATGCTTAGGTATG 95983 29 100.0 37 ............................. TTGTATCCTTGTATCCCCATTTTTGCAGCCAATTTTT 95917 29 100.0 37 ............................. GTTCCTGTACCGGGTTGATTACCTGTTCCGGCTCCTG 95851 29 100.0 37 ............................. TTCGCTATTTCTTTAACAACAGGAACGTTAAATTTGT 95785 29 100.0 36 ............................. TAGTTATTTTCAACATATTCTTCTATAACTTCATCA 95720 29 100.0 37 ............................. TTCAGTATAGATTCTAATGTATACTATTCAACTAAAA 95654 29 100.0 38 ............................. ATTCCTAGCACAAGCAATATGATTGGAATGTATTTATT 95587 29 100.0 37 ............................. ATCAAATACAGTTCTTGGCATAGTTATCTCTAAACCA 95521 29 100.0 37 ............................. GGTGTTAGCCCTAAACCATTTCTAGCACCCGCATACG 95455 29 100.0 37 ............................. TTTAAAAGGTCAACTTAAAGGTAGTAATTTTTTAATA 95389 29 100.0 38 ............................. ATATTATCATCATTTAGCAAAGAATTTGCGTATTTTTC 95322 29 100.0 37 ............................. CTTATAACACTTCCTCTCTTAATTCTGCATTAAGCAG 95256 29 100.0 36 ............................. TGGTTTGCAAGGTAGCTCTAAAGACACTTGTTTAAG 95191 29 96.6 37 .......................A..... AGCAATTCTGATATTTTTATTCTAATCATTTGAAATC 95125 29 100.0 38 ............................. CCATCTTTTGTTGCTTTACATAAATTTATATTACTTAC 95058 29 82.8 0 ........C........CA....A...T. | ========== ====== ====== ====== ============================= ====================================== ================== 25 29 99.2 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GATAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACCATTAAAAGCAATATACAAAAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCCAATGTAGATAGATTACGTTTTTTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGCGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAGGAGAGTTGTATACGTGTAAGTGTTGAAAATACTAAGTTTATTTTGGT # Right flank : TTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCTTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATACTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGTATAAATATAATATTCCATCCAAAAGTTAAGAGGGGATATCTTTTTTATGATGGGAATGGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //