Array 1 43625-44386 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGFO010000009.1 Pectobacterium parmentieri strain IPO:1955 FHFMMDEF_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43625 29 100.0 32 ............................. TGAATAAATAACAGAAAACTTTCGAAAACGAG 43686 29 100.0 32 ............................. GGATTAATTTTCATTGAGGATTAAACAATGGC 43747 29 100.0 32 ............................. CAGATCGTTAGTATTGGAAAAGAAATAGCTAT 43808 29 100.0 32 ............................. AATTTTCAACTCTTATGTCATTTGTTACTGGT 43869 29 100.0 32 ............................. CATTTACCCGACAGGAATAAATAATATGGCGA 43930 29 100.0 32 ............................. CAACTTGCTTAGCTAAATGCGCTAGCTCGTCG 43991 29 100.0 32 ............................. CTACGGTAAATCCATGATTAGCCGCGCGGACA 44052 29 100.0 32 ............................. CAATTGCTGGCAGAAACCAAATCCGGACGCCA 44113 29 100.0 32 ............................. CCCCCTGTAATGCGCGTCAATCTCGCTTTCCG 44174 29 100.0 32 ............................. TACATAATCACAGTCGGCGTACAGCAACGCAT 44235 29 100.0 33 ............................. TGCTAATTTGTAACCTTCCGGTATTACCGGAGA 44297 29 100.0 32 ............................. TTCCAACCCTTTCAGCAAGCTCTACCTGAGTA 44358 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTATTGTCTGCGGGAGGGATTACGCCACCGCTGCCACCGGACGATGCTCAGCCGCCTGCGATCCCTGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGACAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTTCCGCCGCGTTTACGCGGCAGGCTGGCGGTGTGGTTGCTGGAGGTTCGTGCGGGTGTTTATGTGGGTGACACCTCGCAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTAATGGCGTGGGCGACGAATACGGAGTCCGGTTTTGAATTCCAAACCTGGGGTGAAAATCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTCTACCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CTAATCCGTGGAAGCGGCTACAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGCTTTTCTCGGGTGCGCTTCTGCGGCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCCGCTTGGGTTATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAGAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCATGAGGAATAGAGACGTCATCCTCTGCGCTATGATCGTAGGGAATGCTCTCATAGAGGGCGGGGTCGTCAGCATTTTCAATAAGTTTCTGATATAACTCGTACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGTTGTGGTGTAAAGAAGGACGCATTTTCCTCCTCAATATGTCGTCGTTGTCCTGCGTTTGATTTCAAGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 46163-46862 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGFO010000009.1 Pectobacterium parmentieri strain IPO:1955 FHFMMDEF_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 46163 29 100.0 32 ............................. ACGCCCCTGATTTGAGCGAATCATGCTGATTC 46224 29 100.0 32 ............................. CCGTGCTCAATCGGTATTGCGTGCGTGTTCTC 46285 29 100.0 32 ............................. GAGGAATCAAAGGCATCTGTCGCGCTGCATAA 46346 29 100.0 32 ............................. ATCACCTGTTAGCGGCTGCTTTTCAGGATCTA 46407 29 100.0 32 ............................. GCTCGCTGTTCGTGGTTGGTGCGAGGCCAAAA 46468 29 100.0 32 ............................. TTAATAAAAAAAGAGCAAGTGAGGGGATACCC 46529 29 100.0 32 ............................. ATAATATAAAAACATTGAGAGGCTATGATGTA 46590 29 100.0 32 ............................. CCCCGCAATTACACTTATGCGCCGATCTGGAG 46651 29 100.0 32 ............................. TACGGATGATTTAGCGAAATTAACAACAATTA 46712 29 100.0 32 ............................. CTGTGCTCAGTGCGTCGAGAAATACCGCTGAT 46773 29 100.0 32 ............................. ATTGGGGTTATCTGAAAGAACGGCCAGCCTAA 46834 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGTAGCTTTCAACGAGCGTATTAAAGCGCTCCCTGCTGGTATCGCTTTGCTGCGCATACTTATGGATCAGCATGGGCTAACGCAAAGTGACTTTGAAGCTGAGATCGGTAAAAAATCTCTGGTATCCCGAATTCTAAATGGTGAGCGTACACTAACGGTTGATCACATGAGCGCACTTGCTAAACGATTTGATATTCCCGTGAGTGCTTTTGTTGATTAGTACGATTTTTGCCAAGTACAGCATGATGCGTCATGTAATAAAGACTGCCGTGCTGGACTGTTATCTGAATAATCCCTGCGTTAGCAGGGATTACTTTATGGCTGAGACGCATTGTAAGAAATTATTGAAAGGAATGCCGGTAGATCTGGACGGCCTGCTGTTAGCCTCTTTTTCATCTATTGAAAATCAATAAGTTGGCGATATTTAACAACATGGAAAAATCGGTGGGATTTTCTCTACTGAAAAAAGTTTTATAAAACAAACCTCTACTTTTAGA # Right flank : GTACCACGCGGGATTCATCTTTAATCCGACTGAGTGTTCCCCGCATGCGGACAAATCCCGCTTCTAGCTGGCGCGATGGCAAATTGCGTGTCAGTATTACAGAACGCTGTTTTTGTGCTCACCGTACTGGTGCGGCACGATATCCATAATTTTTTGTCTTCCATACGTTACCCGTAAGGAGGTGGTATGAAAGTTGAAGCCGCAGAGTCCTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCGGAGAAAGTGGCGCTGTCCGAACAGCTTCAGCCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGCTATGATTTTACCCGCATCAGCCCTGCCGAACTGTATGAAACGGTAGAAGGTCTTGTCAGCAGCGGACAACTGGGGCGCGAAGAGGGCTCCGCACTGCTGGGTTTTATTTCGTCGCCGCGAGAGAATATCGGCAGTGTGCCGCCTTCTAATGTGTTCCAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 280983-277594 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGFO010000001.1 Pectobacterium parmentieri strain IPO:1955 FHFMMDEF_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 280982 28 100.0 32 ............................ AGATTGAAGGCAATGGATCCAGAAGAAGCACT 280922 28 100.0 32 ............................ AAGAATGAAAACGCGGTCAGGGTGAACGCTTA 280862 28 100.0 32 ............................ CGAATTCGTCTACCACAGTTTCGGTTAGACTG 280802 28 100.0 32 ............................ GCTGGCGCGGGGAAGTATGACTCAGTCGTCCG 280742 28 100.0 32 ............................ GATAATAACAAACTTAGGCATGTTATTTATCC 280682 28 100.0 32 ............................ CGCATTTCGGTGATGACCCCGTGAAAGTTTTC 280622 28 100.0 32 ............................ GCGTCATGGAGAGCCTGAAAAAAGATGGTTTT 280562 28 100.0 33 ............................ CGCTTGCGCAGAAGTCCAATAAAAATTGGTCGA 280501 28 100.0 32 ............................ CGTCGCTGTCCCGCTGTGTTAGCTATGACCCG 280441 28 100.0 32 ............................ GTTGGGCTACAGCACATGAGCAAGCTAGGAAC 280381 28 100.0 32 ............................ ACTAACACTCCAATAATCGGTGGGGAGCAGAT 280321 28 100.0 32 ............................ GCCAGATTATCCAGTTACGCGACCAAGAAACC 280261 28 100.0 32 ............................ GCACCCAGATTGTTGGTTGGCGCTTGGCATTC 280201 28 100.0 32 ............................ TAACTGGTGGCAATACTCGATCTTGTGGATGC 280141 28 100.0 32 ............................ AGCACAGAGGCGGCAAAGCTTATATCCAGCCT 280081 28 100.0 32 ............................ AGATAGCGCGGATATCAAACCGAATCCAGCTA 280021 28 100.0 32 ............................ AAGCAATGTCGGAACGACGCCAAAAAAAGGCG 279961 28 100.0 32 ............................ ATCACATCGGTTATCGATAGTGAGTCACTTGC 279901 28 100.0 32 ............................ AGAACACAAAAAATCGACAGCGAATTCAGGTA 279841 28 100.0 32 ............................ TCGCAATAGCGGGGCTTATTTTTGGAGATGAA 279781 28 100.0 32 ............................ GCGCATGTGTCGTCGGCTACGAAGGTCAATCA 279721 28 100.0 32 ............................ TTCTCTGGTGAGACCATTCCACCATTCAGCCA 279661 28 100.0 32 ............................ TGAGTGGGCTACATTTACGCACTATCCCTGGC 279601 28 100.0 32 ............................ AGCAACGTTAGATACAGCGCAGACAGTTACCA 279541 28 100.0 32 ............................ TCGCAAAAATATCTTGTTTCGCTATTTCGCGG 279481 28 100.0 32 ............................ CGATGCGATGCCGTTCGCACAGAACCGGCTGA 279421 28 100.0 32 ............................ AGTGTGCGTAAGCGGAGAAGTTCCCCACCTTT 279361 28 100.0 32 ............................ AGCCATTTTATGACAGGAACAGCCATAGAATT 279301 28 100.0 32 ............................ AGCGCATCCTCAAGCGTCGGAACTGGGTCAAT 279241 28 100.0 32 ............................ TGATAATCAACCGGTGTTCCACTAAACATAAA 279181 28 100.0 32 ............................ AGTCCGACAAACAGCACCACCCGTTCAACCTC 279121 28 100.0 32 ............................ ATTTGCCCTGCACTCTCTAGCCATCGATACAT 279061 28 100.0 32 ............................ AGCAGAGAAGACCTTAAATCTCTTCACATCAT 279001 28 100.0 32 ............................ TACGGGCAGAGCTGATCGCCAAGTTTGGCCGC 278941 28 100.0 32 ............................ AACTAAATCCAGAATTCGCTTTAAATATTTGG 278881 28 100.0 32 ............................ GGGTTAAATGTCACAGCGAGATTATACGTACC 278821 28 100.0 32 ............................ GAATTTGCTGCATCAGGCAACAGCATATCAAA 278761 28 100.0 32 ............................ AATATCCCGATCCTGCTCGTGCTGGTGAAACA 278701 28 96.4 32 .............T.............. CGCTTGCTGTTTTGTACCTGATGGCATCAGGA 278641 28 96.4 32 .............T.............. AGTACGTGAAAGATAACGCCCCACCACTGCCT 278581 28 96.4 32 .............T.............. TCTATACACTTGAAACTGATTACCCAAATCCA 278521 28 96.4 32 .............T.............. AAAGCTTACCGGAATCGAGTTTTGACCAATGA 278461 28 96.4 32 .............T.............. ATATAGGCTCAATGATGAATTGTTAGATACCC 278401 28 96.4 32 .............T.............. TCAATCGTCCCGTCAATCCACCCCTCATACTG 278341 28 96.4 32 .............T.............. AGCCTGCTAACGATGCGATGGGCGATCTGACC 278281 28 96.4 32 .............T.............. GGGGAAATTAATCCTTTCTGAGGTAAAGAAAG 278221 28 96.4 32 .............T.............. GTATAGGCTCAATGATGAATTGTTAGATACCC 278161 28 96.4 32 .............T.............. ACGCTACAGGTTCTTTCGCCGCCCTGTCATAA 278101 28 96.4 32 .............T.............. CGATACACGAAAACCCAACGGTGATGATGGCC 278041 28 96.4 32 .............T.............. CACTTAACGCAGTCGCTATCGCAGCAACCGGC 277981 28 96.4 32 .............T.............. TCAATACGCTACAGCAGACAGTCGCGACACTG 277921 28 96.4 32 .............T.............. GCCAGGCGAGGGAGCTGCACCGGACAGCGGGT 277861 28 100.0 32 ............................ ACCTGATAGAAGTTCATGCTTGTGGAAAGAAT 277801 28 100.0 32 ............................ TCTAGCCAGTTATGAATTTCAACCGACTTTGA 277741 28 100.0 32 ............................ ACTGTTATTTCATACGGCACATCAGGTGGCAG 277681 28 100.0 32 ............................ AGATCACAGTGAACAGGAAAACGATATTCAGC 277621 28 78.6 0 ............G.......T.C..TGT | ========== ====== ====== ====== ============================ ================================= ================== 57 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAACATCACAACGCTGGTATTGGCGATGGGAATATTCCAGTACAGCGACTGACTTCCCTCTTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGACAATGCTGAAGATAATAAACATTGGCGCGTTTGGAATGCAGAATTGTTTTTAAGTCCGAAGGGCTAAAAGCGTTATCCATAATGTATTTTCTGCCGCGATCGATAATAGGTGTTGATGCCAGCGAAATTAATCGCAGACTAATTATTTAATAAATAAAATATAATCTTCAGAAAACTAACGAAAATCAGCCTATCACAGATAGCTTGGGAAAATGATGGCTACAAAAAATATTACCCAGATGCAGACCCTTTTTATTTGGTCTATTTCACAGGATTAAAAATCAATGAGTTACAGTTAGGCTGAAAAAAAGGGTTTTTGCGGCAAAAACGGTGATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : TTATCGAGATAAGTCGCTGGTACGATTCGCTTCAAGGGAGCTATTCCCCATTCAGCGTAACGACCAGCGAGCGGCTACCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCATCCGTCGGTGATGGGGAGCGTGAGGCTGTTTCCCAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCACTGCCTTCATAAATATGGCGGTAGTACGGTTCATCCTCCGGCACTAACCGATTAAAGAAATTCTCGAAATCCTGCCTCACCGTGGGGTCCGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACATGCATCAGTCCGGCTTTTATCTGACGCAGCGCAGTGACCTGCGCCAGTATTTCATCCGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGCCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGTGCCAGAATCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 300120-299071 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGFO010000001.1 Pectobacterium parmentieri strain IPO:1955 FHFMMDEF_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 300119 28 100.0 32 ............................ TGAGCCAGCAATCAGCAACCTACGCGGCAAGC 300059 28 100.0 32 ............................ GGGTGTAAATGCCGAAACAGCCCCCGCAGTTA 299999 28 100.0 32 ............................ GCGAAATCCCACCGCTCAAATAAAAAAGGCTA 299939 28 100.0 32 ............................ GCCCGGTGCCTGCGGCGGTGCCAGTACCACAC 299879 28 100.0 32 ............................ GAATGGCCCAACTACAGCATATGCAGTTCCAG 299819 28 100.0 32 ............................ TGGATCAACAGCGCCGAGTATCGACCAATCAT 299759 28 100.0 32 ............................ TAAATGAAACAGAGGGTGTATTTACTGAGCCA 299699 28 100.0 32 ............................ TTTGCAGTGTATGACCAGTTAGCAACAGAACT 299639 28 100.0 32 ............................ GTTCAGCCATCTTCTTTCTCCTGTTTCAGTAA 299579 28 100.0 32 ............................ AACTCCCCCCGGCGGTCGAGTGACTTGCTCTA 299519 28 100.0 32 ............................ TCATCGACCACGTCGCAGCCCTTGAGCAGCAG 299459 28 100.0 32 ............................ GCGCCCAAGCAATGTCGGAACGACGCCAAAAA 299399 28 100.0 32 ............................ AGACGACGCCGACGAGGTAAAGCACATCATTC 299339 28 100.0 32 ............................ AAGCCAGCCGTATTGAACAGCACTGATCCCAC 299279 28 100.0 32 ............................ AAATCGGGATTGCTGAAATCCAGAAATCAATC 299219 28 100.0 32 ............................ ATCTGCATCAAAATAGTTAGTACTGGTATATC 299159 28 100.0 32 ............................ GGGCGCGCTGTCATGCTGCGCATCGAGCCAGC 299099 28 85.7 0 A...........GC..........A... | G [299073] ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGCCTGGCGAACTGCATGTTTCCATATTGGTGGGCGTAGCGATGACCACTATCGGCATCGTGAAATATCGGCACGCCCAGCACAATTCGAGACCTCATAGCCCAGTGCGGAGCAAAACCGTTACCCAAAAAACGCTCTCCACAAAAACAATCACCGCCAAAACAATCGCCGCATTCGTACTGATCGCGCTTTATCTGGTACTCCCACTGCATCTCTATCTGCGTGAACCTTTACCCTACTGCGCCTTTAGCCCCAGCGGGCAGCAGCTAAGTATCTGTCTGGGAGAGGATGACGAACGGATCATTGTGGAGTGATGCAGATTGGAACAGGCCGAGACAAAGAATAAAATCTACAACGCGCTTCCTCCAAGACCCTTTTTTAACGGCTAGTCGTAATTTACTGATTTTTAATCACCTACAGCCTCGATTGTAAAAAAGGGTTTTTCCGAGAAAACAGGGTATTCGCTTTAATAATCTGGTAATTAGCATAAAACTCTTACG # Right flank : CAAAACGTTCCGGAAATCAGCGATAAAAAACTCATAGGCAACGCGGCTTAAAAAGCTGGTAGTCTGTTTGACTGACTATCTGACACTGTTTAGGGAACGCGATGTACAACATTGATGATTTCGATCTGAAAATTCTGACGCTGCTGCAAATCAATGGCCGCCTGACCAATCAGGAACTGAGTGAGTTGGTCGGGCTTTCCGCCTCACAGTGCTCCCGCCGCCGCATCGCGCTGGAACAGGCACAACTGATCCTCGGCTATCATGCCCGACTGTCACCGAATGCCGTTGGTCTGGAATGTCTGGGGTTAATTGAGGTGCGGCTGATCAACCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTAGGGGAAGTGGATGCGATTATCGATGCCTATAAGACGACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTCGCGGATCTGCCAGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGTGTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //