Array 1 1024832-1026961 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFMI01000001.1 Serratia fonticola strain 133R Ga0299863_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1024832 28 100.0 32 ............................ AAAGCCAAGCATCAAAAATGCAACCGGGGGTA 1024892 28 100.0 32 ............................ GCTGACTATATCCCGTCGCTGCTTGCCTCATA 1024952 28 100.0 32 ............................ ATTTTCAACAGTTACATCACCAGTCACAGAGC 1025012 28 100.0 33 ............................ CGTATGGACGAAGATGAATTCCAGCAACTCTAC 1025073 28 100.0 32 ............................ TGTACGGTGATACGCAGCGAGTGTGCGGATAC 1025133 28 100.0 32 ............................ TAATTCAGTGAGAGGAACGTTTTGCGATTGCC 1025193 28 100.0 32 ............................ GGCTCGCGTGAACGCTTCCGGCGATGTTCAGT 1025253 28 100.0 32 ............................ AATACACGGTCATTTATACGGATCGTCACTGG 1025313 28 100.0 32 ............................ CGGCCCGGACGCACCGACAGCGGCCGTTGGTT 1025373 28 100.0 32 ............................ ACGGGTGACAAGCCCTTGAAAAATGCGACGGT 1025433 28 100.0 32 ............................ ATTAATAGTGCTCAATCTAGTGTTTGCATACG 1025493 28 100.0 32 ............................ CTCGTTTCTGCGTTCCCAGCCCCGAGGATTTG 1025553 28 100.0 32 ............................ AACAAATAGCGAAAACGGCTAATCTTTACAGT 1025613 28 100.0 32 ............................ TGCTTGGGAAGGTAACGCGCTGGAGGAGTTTC 1025673 28 100.0 32 ............................ TATGAGATTGGGGTGTTCTTCAATGCCCTTCA 1025733 28 100.0 32 ............................ AGAACGCCGGGATCACTGCACTACAAACGCTA 1025793 28 100.0 32 ............................ ATGAAAAGCACATTTCTTTTTTGATGGATAAC 1025853 28 96.4 32 .............T.............. ATCATATTCGCACTGGTTTCACAGCGTTTCGC 1025913 28 100.0 32 ............................ AAGTTCCGTACTGGGGCCACCGGGCAGGAATG 1025973 28 100.0 32 ............................ GTTTGGCCGCAGGAAGTTAATTTCCTGTTTGA 1026033 28 100.0 32 ............................ AGCAAGAACGTTGGGGGGCGACGCCCGAGGAA 1026093 28 96.4 32 ..........A................. GACCACGCTTACGATGAAATCACCGGCTTTCA 1026153 28 100.0 32 ............................ ATGCGCGCCAATGGCCTCCGTGATAATCTGCA 1026213 28 100.0 32 ............................ GCGACCAGGGCCGTGCTCTAAATCATGAAAGA 1026273 28 100.0 32 ............................ AGATACCACGCGCTCTGCGTAGCGAAATCCAT 1026333 28 100.0 32 ............................ AGTCACCGCCCCACTCGATCGGGATATGTAGC 1026393 28 100.0 32 ............................ AGCGGAAGATCTGCTGCTTGTTGTTGTGCCAT 1026453 28 100.0 32 ............................ GCAAAACATCGGCCTGTTTCCCGCCGCTGTTA 1026513 28 100.0 32 ............................ CATAACGGACAGTTGTTCATCCATTCCAACCC 1026573 28 100.0 32 ............................ ATTTTGGAATATTCCACTTTTGGCTCGGTGAG 1026633 28 100.0 32 ............................ TCGATCTGCTTAACGGCGTCACCCGGATGAAC 1026693 28 100.0 32 ............................ CGTCTTGGCGCCCATTTTGTGATTCTCCGGTG 1026753 28 100.0 32 ............................ TCTAACATGCTGGAGAGAGTGATGATTATACC 1026813 28 100.0 32 ............................ TTTAACTGCAATCTTGTTCAAAAGCGCACTCT 1026873 28 100.0 33 ............................ CTATGGCCGCCATTTCTATGCCGGTAATGCAAC 1026934 28 89.3 0 ....................A.A.A... | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGCTTGGGCAAACTGGTCACCGAATGCTTGCGCAGCGTGGAGATGATCTACCTGACGCTGTCATTTATCACCACGCCGGTGTTTTACCTTTCCGGCACCATCTGGCCGTTGCAGGCGATGCCGCAGTGGGTCAGGGCGATTTCCTCAATGATCCCGTCAACCTGGGCCACCAAAGCCATCGCTGGCGTGAATCAGATGGGCCTCTCGTTGCGTGATGTCGGTGGAGATGTGGCAATGCTGCTGCTGCTGGGGGCGATTTATACGCTGATAGGCATTGGCGTTGGCGCCGTACGCAACCGCGTGGGGCTGCGCAGCTTATTCCGTCGGCATCGGGGATAGAATTGGCTCTCTTTACGCCATAAGCATGCGAACCCTTTTTTTTGCCGAGATAATATCTTACTGATTATTATCAGATTTTAAGGTGGGCAGTAAAAAAGGGTTTTCGCTGTATTTTGGCGATGTCTCTTCAATAATCATGCTGTTAGCGTTATTCTCTAAC # Right flank : ATAATCACCCAGCAGAACAATAAAGCCCCAGGCCTTATTGCTCTGCAAAAGATAATTTATTGCACCAACTCCAACCCGGCCACGCGCCGCCAGTAACCATTGCATTCGGCGTGGTGGGCTAATGCCAACGGCTGTGCCCCTTGCTCGTTAGCGCGGAAACTATCAATTAACGCCAGAGTATCTTCCCCCTGCGGCGACAGGCGCACGATATCAACCAGCCCCTGCATGCTGGTCAGTTCGTTACCCAGGTTGTAGCAGTAACCGCTCATGGTCTGAATGCCATTGAGTACGAACACCTGCTGGTTCTCCTGCGAGTTAACGATGCGTCCCTGAGGATATTTGATACAACAGGTCTCGCATTCGTCCTTACCTCGGTTTTCTGAGCGGGCGGTAAAGCAACGCGCCGAATAGGCCAAGGGCAAATGACCATAGCTCAACACTTCCACTTCAAACCCCTGGCGGAAGCCCAACTCCTCGCATTGCTGCAATAAATTGACCAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1035083-1035893 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFMI01000001.1 Serratia fonticola strain 133R Ga0299863_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1035083 28 100.0 32 ............................ TCATCGCATAGTGCATTTGGATTGCGGAGTTT 1035143 28 100.0 32 ............................ GCTATTGCCACGCGGTACCAGTACCTGGACGG 1035203 28 100.0 32 ............................ AGGATAGCTGGCGTCAGCCCTCAATCTGTCAA 1035263 28 100.0 32 ............................ CTCAGAAAGCGAATTGAGCACACCCGCAGCCA 1035323 28 100.0 32 ............................ CGGAACCCTTGCCAATAGAGATACATCGCCTG 1035383 28 100.0 32 ............................ GTCATGGTGCGACTCAGCAACGCGCAGACCAA 1035443 28 100.0 33 ............................ CTGCAAGCACGCCGGCTTCATTACCCCACAACG 1035504 28 100.0 32 ............................ CTGGAGAAAATGGTGTTTTGACCTATGCCAAC 1035564 28 100.0 32 ............................ ATTAAGCCAATCATGCTGCTCTTTGGTGAGGT 1035624 28 100.0 32 ............................ TTGCCAGTTACCGTTACCCACACTAGGCAAAA 1035684 28 100.0 32 ............................ CGTAAATAGTTCACACTTTTTCGATAGCTACC 1035744 28 100.0 32 ............................ ACATCATTGTCGTTAACTACAGCGGCGGTAAG 1035804 28 100.0 32 ............................ AATACCCGGCATCCTTCTCGAAATTCCAATAA 1035864 28 89.3 0 ......................C...TC | G,A [1035883,1035887] ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTGTCTATGTCGACCGTGACGATCAGGGGAACGGCACACTTGCCCGCACAAGAAAGAAATCGTTTTATTGGTATAAGAAGGTTATCGCCAGTAACGGTTCAGATCTGAGCTAGTAAAAAAGGGAATACCTGCCTGGTGCGGTATTCCCAAAGAGAGATGACAACGTGTTTTTTTAACTTGAGATATCCAGGCCTGCCGCCCCGAGGGACGTTCCGCTGGCTTACGCCACGACGACCCCATCGCTACGCTCTTCCTAATATCTGACTTTGTCAGCAGTGTGAGGGAATGCCCGCTTTATGCGGCATTTCCTTTTCTTTTTGGGTGGGGAGACAAGCCGGTATTTGGCAGAGAAAGAGCATATCCGTTGTTAACCCTATTTTTGCCTTGTTATTTAATTTATTGATTTTTAATGGTTAATTTTCTTGGTGTAAAAAAGGGTATTTTGCCTTTTTAACGGAAGACGCTATGCAGATCAGGTGATTAGCGCTAGTCTGTAACG # Right flank : CACCAGGTATATCCGATGACTATTTTTACCACTGATAATATTTATGTATTATTTTAATTTAATTATCATTGATTTTAATTAATTAAAATTTAACATTCATCAAGTTATTCAAAGGGGTAACTGTGCTAAAACAACAAGGGGAACGTTGGCATCTTGCGTGAAAATTCACGAGCTGGATGATTTTATGACATAAAAATAGGGATATTGCCCCTTTCATGAATAAACAATTCTCGCCTTCAGATTTAAAAACTATTCTGCATTCAAAACGTGCAAACATTTATTACTTACAATATTGCCGTGTATTAGTGAATGGCGGGCGGGTGGAATACGTCACTGATGAAGGCAAGCAATCGCTATATTGGAATATCCCTATAGCCAATACTTCAGTCGTTATGCTGGGGACCGGCACCTCGATCACCCAGGCAGCAATGCGCGAATTTGCCAAAGCAGGCGTATTAATCGGTTTTTGTGGCGGTGGTGGCACACCCTTGTATGCCGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1044828-1046595 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFMI01000001.1 Serratia fonticola strain 133R Ga0299863_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1044828 28 100.0 32 ............................ ACATGTTCCTGGCCGCGCTCTGCCGCCCACCC 1044888 28 100.0 32 ............................ ATTTCACGGCTACGCCATCCCTTCGTCGCTAA 1044948 28 100.0 32 ............................ AACTGGGAAATGCCGTCGGTACCTACCGGGAA 1045008 28 100.0 32 ............................ AGAATGGATATTGAAAACGTTAAATCTTAAAT 1045068 28 100.0 32 ............................ GCTTAGCACCACTGGCAACAGCACGCTGCAAA 1045128 28 100.0 32 ............................ AATTTGTTTGAACGGAGATTGCGGTGAGCCCT 1045188 28 100.0 32 ............................ ATATTCCATCTATTCCGAAGGCCTTACGCGTA 1045248 28 100.0 32 ............................ AGTGATCGCACTGCTAAGACTCAAATTATAGC 1045308 28 100.0 32 ............................ GCATGCGGCCAGAAATAACTATTTCCATTGAC 1045368 28 100.0 32 ............................ CATGAATTACGCTCAAGCCATTTTGTAATAAC 1045428 28 100.0 32 ............................ TTCACAATCGATAAAATTAGAACCCTGACTTG 1045488 28 100.0 32 ............................ AGTCCGCTGCCAGCAACACCGGCAACCGCTCC 1045548 28 100.0 32 ............................ CCAGTCAGTAACCTGCTTGCTCCATGCTTCAG 1045608 28 100.0 32 ............................ TCAATAATTCACTATGAGCAGTATAATGGGGA 1045668 28 100.0 32 ............................ AATCACATGGTCATTGTCACAATGCACTAATC 1045728 28 100.0 32 ............................ TCTGGTACTAATGATACCACATCGGTATGTGC 1045788 28 100.0 32 ............................ GGAAAGCCAATCAGGAACGGATGAAAAAAATT 1045848 28 100.0 32 ............................ TCACCAGTCTGGTAGTCCACAACCTGCGTCAG 1045908 28 100.0 32 ............................ CGCAGAGAGCACACCCGGATTGATTTTCACGT 1045968 28 100.0 32 ............................ ATTTGCGGCAGAAAAATAACCCGCCGCGCGAA 1046028 28 100.0 32 ............................ ATCGATGGGGATTTTGGGTAAAAAATTTCAGT 1046088 28 100.0 32 ............................ GCAAACGCCTATTTCTTGTTGGCCGGTGCGAT 1046148 28 100.0 32 ............................ ACAACGCCATACCTCAGCAGAAGCGCCACCAG 1046208 28 100.0 32 ............................ AGCGAAAAACAGGAGGTAAGCGCCTGCGCTAG 1046268 28 100.0 32 ............................ TTGGAAACCCGGTAAACACTCAGGATGCAGCC 1046328 28 100.0 32 ............................ TCTCTGGCCTCTGCCCACAGCTGTAAAACATC 1046388 28 100.0 32 ............................ ATCATGGTCACCAGCCTGGAAAACCTGTCCAT 1046448 28 100.0 32 ............................ ATGGGTTGCCGGGCAGATCGTGCGTCAGTCGC 1046508 28 100.0 32 ............................ AGTTAAAAAGGCGGTGGATGCCGCCGTAACAG 1046568 28 89.3 0 .....................AC.A... | ========== ====== ====== ====== ============================ ================================ ================== 30 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCGCTCACCGCCTTTGAGTCTTTATCATGGCGTAAGGGGCTGCGGGATTACACTGAATGCAGCGAAATTCAGCCAGTACCCGCTAATGTAAAATATCGAACAGTACGCCGCGTGCAGTTTAAAAGTAATGCTGAGAGATTGCGGCGTCGTTCTGTTAGTAAAGGGTGGATCACCGAGGAAGAGGCGCGTATGCGTATTCCTGATTCGGTAGAGAAACGCACTACGTTGCCATTTATTCGTTTAAAAAGCCTTTCTAGCGAGCAGACATTCTTACTGTTTATCGAACAAGGCAAGATTTGCGATAACGCAACTGAAGGGATATTCAGTGCGTATGGTCTTAGTGCAACGGCAACCATTCCATGGTTTTAACCCTAATTTATTGGCTGATTCTAACTTATTGATTTAAAAGATTGGAGTCGGCCATGTTCAGAATAGGGTTTTGGCGCGTATTTCCATAGTATTGCTTTAATTAACAGTGTATTAGTGTTGATGCGCAACA # Right flank : ATGTTCAGTAACTTCACCGCCAAACATAGGGGTAAGATACAGGGAGCGAACAGGAGAACTCACGTTGAACCAGAGCGAAGACCAACTGCATATTATCCGTTTTCTCAGCAAGCAGCATGTGCTCACACTGTGCGCCGGTCATGGCGCGGCGATGTGGTGTGCCAGCTGTTTTTACGTGTTCGATGCCGAACGTATGGCGCTGTGGCTGATGACTGAACCGCATACCCGCCACGGTGAGCTGATGCAACAAAACAGCCAGGTTGTTGGTACCGTTGCGCCGCAGCCAAAGACCATCGCGCTGATTAAAGGGGTGCAATACGCGGGGGAAATCACCTTGCTGGAGGGCGATGACGCGCAGATGGCCCGTGCGCGTTACTGCAAACGCTTCCCCGTTGCCAAGGTCATGAAGGCCCCGATTTGGCAGATTGCGTTGCAGGAAGTGAAGATGACCGATAACACCTTGGGCTTTGGCAAAAAGCTGCATTGGGTACGCTGATGAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //