Array 1 12-651 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDIT01000031.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM133, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCAYTAYTGATC 73 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 134 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 195 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 256 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 317 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 378 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 439 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 500 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 561 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 622 29 96.6 0 A............................ | A [648] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATCAAGGCCTAG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTTCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5457-6949 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDIT01000053.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM133, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5457 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5518 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5579 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5640 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5701 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5762 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5823 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5884 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5945 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 6006 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6067 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6128 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6189 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6250 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6311 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6372 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6434 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6495 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6556 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6617 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6678 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6739 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6800 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6861 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6922 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23081-24678 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDIT01000053.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM133, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 23081 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 23142 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 23203 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 23264 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 23325 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 23386 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 23447 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 23509 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 23570 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 23631 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 23692 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 23753 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 23814 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 23875 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 23936 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 23997 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 24058 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 24119 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 24180 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 24241 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 24302 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 24364 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 24467 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 24528 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 24589 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 24650 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GCACTATTTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //