Array 1 141593-139631 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHRO01000030.1 Bifidobacterium longum subsp. longum strain MCC10067 contig0030, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 141592 36 100.0 28 .................................... GGATGTCAATCAGGAACTTGTCCGTGGT 141528 36 100.0 28 .................................... CCTGACCGTCATTGGTAATGGTGGTATC 141464 36 100.0 28 .................................... ACACGTGGCGTTGGAATAATCCGTTAAG 141400 36 100.0 28 .................................... GAGGCCCGCGACCTGATTTCCAGCGGCG 141336 36 100.0 28 .................................... GCCTCATGATGAAGAGTCGCAAATCATC 141272 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 141207 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 141143 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 141079 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 141015 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 140951 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 140887 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 140823 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 140759 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 140695 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 140631 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 140567 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 140503 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 140438 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 140374 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 140310 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 140246 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 140181 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 140116 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 140051 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 139987 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 139922 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 139858 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 139794 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 139730 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 139666 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 31 36 99.6 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGTAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 68432-68776 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHRO01000035.1 Bifidobacterium longum subsp. longum strain MCC10067 contig0035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 68432 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 68498 27 96.3 54 ........................A.. ATCATCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [68504] 68582 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCGCGGTC 68642 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [68690] 68690 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 68747 27 81.5 0 ......A.......C.....C....CG | GC,C [68765,68769] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CCATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTTGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACTGACAACTAAATGTACATGGCAGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCTCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTGCGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGCTTTAGTCCTCGAACGGATCGAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //