Array 1 546409-548424 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRZ01000002.1 Rhodocyclus tenuis strain IM 230 scaffold0002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 546409 36 100.0 30 .................................... TGCGCGATCTGGTGCCAGAGGCAGCAGCGA 546475 36 100.0 30 .................................... TTGGTCGTTGTCGTTCCCGGCGTGCCGGCT 546541 36 100.0 30 .................................... CGTACTCGGTGACGATGCGCCAATACCCTT 546607 36 100.0 30 .................................... TATGACTGCAAGGTAAAGCCCTTGGAGCCT 546673 36 100.0 30 .................................... TGGAGGGGTTGGAGTGTTCCCGGAAGGGCA 546739 36 100.0 30 .................................... TGCCAGGTATGCCTGCACCTCAACTTTTCT 546805 36 100.0 30 .................................... AGATGCGGCCGGCGTGCGCTGACCACAGCT 546871 36 100.0 30 .................................... TCGCAGTAGAGGATCAGCGACTTGCCGGCA 546937 36 100.0 30 .................................... TTCGAAGCCGATTCAGGCGAAACCATCAAG 547003 36 100.0 30 .................................... TTGGCGTCCTTGAAGGCAACCCGCTGGTTA 547069 36 100.0 30 .................................... TTCTCTGGCTTGCTCACCGGCACACGCTTG 547135 36 100.0 30 .................................... TAGAGCCGTGCTGTTTGCTCATGCATGCGG 547201 36 100.0 30 .................................... TGATCGGCGTCGAGGCCTGCACCGGCGCGT 547267 36 100.0 30 .................................... CTCTACTTCGACTGGATGACGCAGGAAGAA 547333 36 100.0 30 .................................... AACGCGGGGTGCATGTCGAACCTGCGGAAG 547399 36 100.0 30 .................................... CGCGCATCTGCGAAGAGCGGCGCCGCGAGT 547465 36 100.0 30 .................................... GCTCGGACTGGTGGAAGACTCGCGCGAGCT 547531 36 100.0 30 .................................... TGGCCGCAAGTCGAGCCGCTGCTTGCTGAG 547597 36 100.0 30 .................................... CAAGTGAGCGGCACCGCTGGCGGCGTTGGT 547663 36 100.0 30 .................................... CGGGCGCAACCAGCACTTACCGGCTTGCCG 547729 36 100.0 30 .................................... CCGCGCGCCCGATCCTGTCAGCGTCGTCCT 547795 36 100.0 30 .................................... CGTCGCCGTAGTGCCCTTCGAGCGTCAGAG 547861 36 100.0 30 .................................... TATTTCGGTCATTTTCCCGTCGTAGGGCTG 547927 36 100.0 30 .................................... CCAATGCCATGCTGGTTTCCGATGTGTCGA 547993 36 100.0 30 .................................... CGTAACCGTCATCGGACAGGAGCAGAGAGC 548059 36 100.0 30 .................................... TCAGGTTTAGCGGGTATCAGAGGTGTCATG 548125 36 100.0 30 .................................... TAATAGTGCATCGGGAAAACCAAATTTTTA 548191 36 100.0 30 .................................... CCTTCGGAATGGCGTTGCTGTCAAAATACT 548257 36 100.0 30 .................................... AGGCAGACACGCTTACCAGCATCAGCGTCA 548323 36 100.0 30 .................................... CGGGAACCGGGGATTTCCCCCAACGGCGGG 548389 36 97.2 0 ...............................G.... | ========== ====== ====== ====== ==================================== ============================== ================== 31 36 99.9 30 AGTGTAGCTGACTGATGCCTAGGGGCTGATCACAAC # Left flank : AATGCTCGAATTGTTGTCGAGCAACGTCGATCTTCTAGGTCAGGCTTTGCCCCTGTGGGTTGCGCTTCAGCGCTATGCCGCTTCGGTTAAATCGGCGTTAGCTGGCAATGGACAAAAGGTGGAGATACCGGTATGGCATTTTTCGGGGGCTACCGAACCGTGTGGCTGATCGTTCTTTTCGACCTACCCACCGCGACGGCTGATGAGCGCACGGACTATCGACACTTTCACGACCTCCTACTTGACGACGGGTTTAGCAGGCTGCAATTCTCAGTCTATGCGCGGCACTGCGCGAGCGACGAAAATGCAGAAGTGCATACTCGCCGAATACACGGTGCGCTTCCGCCAGACGGGGAGGTAAGAGTGATGACAATGACTGACAAACAGTTCGGGCGAATGAGCGTATTCCACGGACAACTTCGGAGGACTACTGAACGCCCGCCAGAGCAAGTGCTGTTGTTGTGAAAAAGCCCGCCGGTTCAATGAACTGCGGCGGGCTG # Right flank : CATTTCGTGTAGATACCGAGAGACCATCACTAGTTTATCTCCGGAAAGCCAACATCTGGTTACGGATATTTTCCGAATGCCAGCTGATTAGCCAGTTCCCGACCGGGCGTAACTCGGGTCGAAAGCATAAGGACGTCACTCTGACTGAGAGTAAATGCGGATCGGCTCTCTCGAAAAAAAAACGTCCCATTGCGCGAAAACCATCCCTTACGACCAGACCACAGGAACACCCGATGTATAAGAAAAACTTCCTGGCAAGCGGAAAAAACTACTCGCGATGGGCTTCTGATAAGTGATTTCCATCTAGGGCACACCACCTAGAACAGGCGCGCTTGATCGCTTGTCGCTTGATCAATAATTCAGCGAGTTCAATCCTATTTCACCAAAAATCAATAGCTGTTCTATGCGGTCTGCTGCTGCAATTATTGCCACGCCCGACGCGTGATTATCAGAAGTCTGCCTTTCTATACTGAGTCAGTAAGTCACTCGTAACGATTCAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTGTAGCTGACTGATGCCTAGGGGCTGATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-3.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 533599-537151 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRZ01000003.1 Rhodocyclus tenuis strain IM 230 scaffold0003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 533599 37 100.0 35 ..................................... CGCAACTGCTCGCGCCGGCATCCGACGTGCTCGCC 533671 37 100.0 33 ..................................... TTGCCGTACTGCACGCGCACGCGCGGCGCCTTC 533741 37 100.0 35 ..................................... CGTTGATGCGCGATGGCAGCGCCAGCGGCTGACCT 533813 37 100.0 34 ..................................... ATCTGCCGTACAATGGCACAACATTTTCAGAAGC 533884 37 100.0 35 ..................................... GTGCTGCAGAACCTGTCGAAGACCAGCGCAGTGCC 533956 37 100.0 35 ..................................... CTGAAGGAGCGCGACCACCTCGTCACTGAATTCTG 534028 37 100.0 34 ..................................... CGTCTCCGGCGGTCGAGAGCACCGAGACGCGCAC 534099 37 100.0 35 ..................................... CGTCGAAGCGGTTCATTCCGCGCATGGTCAGCCCC 534171 37 100.0 37 ..................................... CGATATCAACCCCCCGGCCGTCGTCAAGTCCGCGCAC 534245 37 100.0 38 ..................................... CGGCGCGCCAACCTGATGACGATGTTTAGCGGCGCCAC 534320 37 100.0 35 ..................................... CGCAAGACCCTAAAAACACGACGCAGCCGACTGAA 534392 37 100.0 36 ..................................... TCTCTGCCGTGCTCGCCTGCTTGCCCGAAGAACCGC 534465 37 100.0 36 ..................................... TCTCTGCCGTGCTCGCCTGCTTGCCCGAAGAACCGC 534538 37 100.0 35 ..................................... CATCTCGGTGCTAAACGTCGGCAGGCGGCGGCGGT 534610 37 100.0 34 ..................................... AGCGCGATGCTGATCTGCCCGACCAGCCACGACG 534681 37 100.0 34 ..................................... TCTTTGAGTCTGACTCGTCCAAGCTCGACAAGGG 534752 37 100.0 33 ..................................... GACCACAACCCCGGGCAGGGCGCCTACGGCCTC 534822 37 100.0 34 ..................................... CGCCACGCCGGCCAAGGCCGAGGAATTCCTCGAA 534893 37 100.0 34 ..................................... ATTTTGGGCCTTTCTTAGGTCGGCGGCAGCCTTG 534964 37 100.0 35 ..................................... TGACGCACTGGACAGCGCAAGCGGCAGCATCGAGG 535036 37 100.0 34 ..................................... CAGTTCGGCAGCGGCTTTACCTGCCGCTACCGGG 535107 37 100.0 36 ..................................... CGTCGAGCCGGCCAGACTTCGCGCTCGCCTTGAACG 535180 37 100.0 34 ..................................... AAGTTGGCCAGCCTGTGGATAAATGGGTGCGGCG 535251 37 100.0 36 ..................................... TTGTCGGTCTCGCCTTCGACGACGACCCAATCGATG 535324 37 100.0 35 ..................................... TTCCGACCCCTGCAGATCGTTGCGGATCGGCACGG 535396 37 100.0 35 ..................................... TGGCCGAGCGCCGCCGGCAGATCGAGGCCGAGGGC 535468 37 100.0 34 ..................................... CGAAAGATCATCGCCGACGCCGTGACGCACGGTG 535539 37 100.0 34 ..................................... GAGCCGGTCGCTCTCGAAGCCGCGGTTGTCGGTG 535610 37 100.0 34 ..................................... AAATCATCCCGAGTGCCCTGCGCTACCCGGGCGC 535681 37 100.0 39 ..................................... TCGGCTTTCACCACGTTGGCGTAGGCATCGATCGCGCGC 535757 37 100.0 34 ..................................... TTGTCCTCGGCGTGCTGTGCCAGAGGCCTCGACG 535828 37 100.0 34 ..................................... ATCGTCGCTGGAGGCTTCCAGCAGGCGGGTGGCG 535899 37 100.0 35 ..................................... AGGTATTCATCCAGCCGACCGCCATCCAGTGGAGC 535971 37 100.0 33 ..................................... TCCTGATTCAATTGGTGAGCTTGTCGCTGTCGA 536041 37 100.0 35 ..................................... GTCGTCGGTGCCGGCCTGCTCGACGATGACCCACG 536113 37 100.0 34 ..................................... GCCAACGATGCAAAGTGCGCGGCCATCCCATCTG 536184 37 100.0 35 ..................................... GTATGAGTTCTTTTGGTGATCGACTTCGCGCTGAG 536256 37 100.0 35 ..................................... CCAACGAACACGCAGCCTGGATATCCATCGATAAC 536328 37 100.0 34 ..................................... ATGAACCGCTTGGCGGATCACGTCGGCCTTGTCC 536399 37 100.0 35 ..................................... ACGTCGGTGGCGCGGTAGGCAAACACATTGCCAAC 536471 37 100.0 35 ..................................... ATCTCCTCCCGCGTCCGTGCCAGTTCGACGCGATA 536543 37 100.0 35 ..................................... CAGCGACTCATCGCCAACGGCCACCGGCGCGCCGA 536615 37 100.0 34 ..................................... TTCTGGCGAGGCCGGTTGTTATATCGCCGGCTCG 536686 37 100.0 34 ..................................... TGGAACTGAAGCGGTCAATAAGCTTTTTGGCATC 536757 37 100.0 34 ..................................... ATCAGTTCGGCGGTGTGATCCAGCGCGCCGCCTA 536828 36 97.3 35 .......................-............. ATCAAGGACTGCGCCGAGTTCGCCAAGGCGTATTC 536899 37 100.0 34 ..................................... TTCTGGCGAGGCCGGTTGTTATATCGCCGGCTCG 536970 37 100.0 37 ..................................... CTTGTCTGGCAAGGCTTCCAGAAAGCGTGATTTTCAG 537044 37 100.0 34 ..................................... GAGAGCGTGGTAACGACATCCCCTCCGGCGTCGC 537115 37 94.6 0 ................................C.C.. | ========== ====== ====== ====== ===================================== ======================================= ================== 50 37 99.8 35 GCATCGCCTCCCGGCAACGGGGGGCGTGGATTGAAAC # Left flank : ATACCTGCCTTTTCTGGTGCGCTGAGCATGCTGGTCATCGTCTGCTACGACGTCAACACCGAAACCCGCGAAGGTCGCCGACGCCTGCGGCGCGTTGCCAAATTGTGCGAAAGCGTCGGCCAGCGCGTGCAGAAGTCGGTCTTCGAATGCCAGGTCGACCGCGCCCGCTTTGAAGCGCTGGAACGCGATCTGGTCGCGGAAATCAAGGACGGGGAAGACAACCTGCGCTTCTACCGCATCGCCGAGCTGAAAGGCTACGAAGTTCGCGAACATGGTTGTTTCCGTGCCACCGACTTCGACGCCCCGCTCGTGCTGTGACTTTGCGCGAACCCCCAGTGGCCATGCTTTTGCCGGGCGATCCGCGCAACGCGCATGCGCATGATTCAACGCGTCTTTCCGTTGGCGATGGCCGTCGCGTAAGATGCTTTCTGCTCAGGAATGAAACGGTCCGCGCAATACGGACGTTTTGTTCTTTCGCTTCCGGTAGTTACGGGGCATGA # Right flank : CCCGCCAAATCGGCAAAATAGCGGCAGTGATCGCATCTTGTCGTCTCTCTCTGCCGGGGGCAGAACGATCACGCCACTCATCAAAAAAGCCGGTCAGGCGAGGGGAAAGCAGCTACATGAAGAACGATCTTCGCGCGGTTCGGCGATGAGCCCGGACACGGCGCTTGCCTCCGCGCGTGCCGCCGAATGTCCGGTCGAGTGGTACGGCGGCAACATGGTCGGTGTGCCGACACCGATTCTCGCTTCGTCGGATTTCAATCTGCATCCGGTCAGGCTGCGCATCCACGGCACGCGTGAGTCGCAGGGCTGTCTGTTTCGCCGCCTGGCGGAATGCAGCACTCAGCGAGAGGCTGCCGATGTCTTCGAGCATGCGATGTCGATGCAGTTCGGCCGCAACCTGCCCGAGGACGAAGATTCCCTCAATCCGCGGCGTTATTCGACCAGCTATCTCGAGCTGCTGCGTGGCTGGGGCTTTGATTCAAACAGTCCGCAGGGAGCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCGCCTCCCGGCAACGGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-17.60,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA //