Array 1 35359-35133 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRKC01000004.1 Parabacteroides merdae strain AM16-50 AM16-50.Scaf4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================= ================== 35358 32 100.0 32 ................................ TGCCGGCGGTATCGTAATCTCCCGTTCCGTCG 35294 32 100.0 33 ................................ CTTTGAAATATATGAAGGATGGGGATTATATAG 35229 32 100.0 33 ................................ TCGTAGAGATCGTGAGAAAAAGAACTCATCGTT 35164 32 96.9 0 ...........................A.... | ========== ====== ====== ====== ================================ ================================= ================== 4 32 99.2 33 GTCGTACCTTATATAGGTACGTGGATTGAAAC # Left flank : TTTAGATAATTATCCGGTCTTTTTAATGAAGTAAGTTTATGTATGTTCTAGTTACATATGACGTAGAAACGATGACTTCCGACGGACAGCGCAGGTTACGTCAGGTAGCACGTCAATGCCTGAATTATGGCCAACGCGTCCAAAATTCCGTTTTTGAATGCTCTGTCTCGCCTGCTCAATTTACCGAGTTAAGATTAAAACTATCGGATATCATCGATCATAAAAAAGATAGTATTCGTTTCTATTTCTTGGGAAATAATTATTCTAAAAGAGTTGAATACATAGGTGTCGTCACATCCTATAATGTAGAAGATGAACTTATAATATAACTGTTTGCGAACATTAAGCATTAACAAAAAGCTGGAGTTTTCGCAATCATTGATTATTAGCCTATTAAACACTCCTATTAGTTTTATTTCATCAATAAAAAATCCAAAAAGTTTATTATCGCATAAATGCATTGATAACAGACTGTAAATGTTTGCATTATTTGTAATGCA # Right flank : GAGTAAAACATACCTGCAGTCGACACAATTTATTAAATTATCAATTTCATTATTTTACCATGCAAGACAGAACTGCTCCACCCTTCTTCTTTACACGCTTTTGCATAATCGTCACGATGTAACTTATTATCTATCAGAAACAATTTCAAAAAATGAGTCCAAGTAAGCTTTTTCGATAAATCAGACACTATTTCAAGTTCTGGAAAATATACGCAGAACAACTCCATTTGAAGCAAGTGTCTAACTTCAAATTCTTTACCATAACGTTCCACTAATTCACGAGAAAGATATTTAAATGTATCTATCCGATGAAGTGTTGTCTCTTTACTGTAAAGATCTTGTTTAATTAGTCTACCGATTTCCCAATACAATATGTTTTTGTCTGCATTCAATCTTCGGCTACCTTTTCTCTGTGATTTTTCAATTAAGAAAAGAATATCACGAAGTAAATCTTCCCTTCTTTTCATATTCATTTTATTTTTATGTACAAAAATAAACTT # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 41923-41035 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRKC01000004.1 Parabacteroides merdae strain AM16-50 AM16-50.Scaf4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 41922 32 100.0 34 ................................ GATTAATTCCTTTCATTGTAAACGGACGAATTAT 41856 32 100.0 33 ................................ ATATCCGAGCTGCTGGAAAAGAAAGTGCATGAG 41791 32 100.0 34 ................................ AAGTTGAAAAGCTGGTACATCTTCATCGCCTTGT 41725 32 100.0 33 ................................ AGCCCTTTGTCGATGTGCAAATATTGGATGAAA 41660 32 100.0 35 ................................ GATTTTGAATATTTAGAAAAACCGCAAACCGTAGA 41593 32 100.0 33 ................................ CTCATCATAGATCATCCATTACGCCCCAATCCA 41528 32 100.0 33 ................................ ATTTTCTTTTTGCAGAATTTATCGTGTTGCCCC 41463 32 100.0 34 ................................ AAGATATAACCCGGTTTTGAAGGCGTGATGCTGT 41397 32 100.0 34 ................................ TATATTATACAGTACTTACAGAATCAAATTCTAC 41331 32 100.0 35 ................................ AAATCCTATCTTCTTTTTTCTCCTCCCTGAACAAA 41264 32 100.0 35 ................................ TTCTAATGAGTATCGATCTTTGGAGAAAAAAGTCT 41197 32 100.0 35 ................................ CAGCCTCATTATGTAGACACGATAGACTTAGGCAA 41130 32 100.0 33 ................................ GTGGGTAGCGTGGCAGATAATTTCGGGGAAGAA 41065 31 90.6 0 .....................-......G..T | ========== ====== ====== ====== ================================ =================================== ================== 14 32 99.3 34 GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Left flank : ACTTCCCGGAGATCCCGTCTCCCCAAAGCTTGCGAAGTCATCCCACTCGTGCCCATCCGCAAAAAACCGAACAGCCAGTAAATAATATTGAACAGCATCCCCCCTACCGCAATCGCCCCGATATAGGATGCGGCCCCCAAATGTCCGACAATCGCCACATCGACCAATCCCAACAAAGGAACCGTTATATTGGATACAATAGAAGGAAGCGCTAACTGAAGTATCTTTTTATTCATTCATTTATCGCATCTATAAAAACTATTCCTAACTTTGTCAGCAAAGTTACAGATTACTTTAGAAATAACATGATTACACTTATGTTTCAATAACAAAAACGCGAACCCTAAGTAATTGTAAAAAACATTGGATGTTCGCATTCCCTATAAATCATACACTTATAGATTTATTTAGAGAATATGAACATTTATTGCTTTTCTACTTTATCATTCGCAAAATTACAATTTAAAAGTGTCATCAATAAAGCTTTTCACAAACATGGA # Right flank : CACTCTTCAAAGGCGCGTTTGAACGTGTCTTTAATGTCGCATCCTTTACGGGGACAACTTTTATAATATTTTTTGCAAGAAGATTACAGGATTAAAATATTTGTTTGTTAGAAAATAAAATATATCTTTGTTGAACAGAGTTATAAAGATACCTTATTACTCAAAGCATAAACACCTTATATTACGTTAACCTAAACATATGATATATACAAATAAAGAATACTGTCTTGAGGTTAAAGGAAGCATGGCCTGCTTTACCCGTCCGGAGATGAAAGTCGAAAGAGTTAGCTACGACATAATAACGCCATCTGCTGCCCGAGCCATTTTCGAATCTATATTTTGGAAACCAGCCATACAATGGAATATTACCCGAATAGAAGTATTAAATCCAATCAGATGGTTTTCCATGAAAAGAAATGAGATTGGAAGTTTAATGAGCCCCCGTTCATCCGGATTATTCATCGAAGATAATCGGCAACAAAAATCCAGTTTGTTACTAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.50,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //