Array 1 106804-105695 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPNW01000011.1 Enterobacter roggenkampii strain DS05262 opera_scaffold_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 106803 28 100.0 33 ............................ GTGTCTCTATGTCATACCGCCATGGAAAATCCG 106742 28 100.0 32 ............................ GTATTCAGTCCAGGCTGTTTCAACGTCACGCG 106682 28 100.0 32 ............................ ACCAGCCCATCGGATCGGGCGCGTTATCGTCG 106622 28 100.0 32 ............................ GCTAACCCTAACGGCTTTTTTTTAGTCAAAGA 106562 28 100.0 32 ............................ AAAGTCAACGACATGGGAGCCGACACGCAGAA 106502 28 100.0 32 ............................ TGTTTACCGGAGAGAGTCCGGGTAACGCTGTA 106442 28 100.0 32 ............................ GCGAACGTTTGATGACGTTATGACCGCGCCGC 106382 28 100.0 32 ............................ TTTCAACGACTGACACACGGTCAGGCGTCGCG 106322 28 100.0 32 ............................ CAGCGCCCTCATGAGCTTGATTTGCTCATTCA 106262 28 100.0 32 ............................ CGGTCGCCTGCAATATCACTGACGGACACGCC 106202 28 100.0 32 ............................ CGGCGCACGTACCATAGATTCATCATACGGGC 106142 28 100.0 32 ............................ TGTACCGGCGTTGGACTTACTCCGCAAGCTAT 106082 28 100.0 32 ............................ AAGGTCTTTTAACGGCTCTGCCAGGGCGTTTG 106022 28 100.0 32 ............................ TCCTGCCATCACCTGCCAGTTGTTGCAGTCAT 105962 28 100.0 32 ............................ TCCATAGGGAAGCTGACCACCCGCCAGTTTTC 105902 28 100.0 32 ............................ TATATCCAGAACAACGCAGTATTCATCCAGAA 105842 28 100.0 32 ............................ GCTGGAATCAAAGTGATGGAGTGAGTATAAGG 105782 28 85.7 31 A..........C...C......C..... ATAGAAAATAAGGCCTAACAGTCCTCGGACC C [105757] 105722 28 75.0 0 ........T..A....A....CCT...G | ========== ====== ====== ====== ============================ ================================= ================== 19 28 97.9 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AACGGGCCACGCGTTCGCTCTCGTCGGGCGTTAACGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTGATACCCGTGACACGCAAAATGTCCGCTTTCGACATGGACGTCCACTCGTGGATGTTGTCGAGCACACTGACGGGTAATCCCTGATTGAGAAATTCAATCAACCGCATACCTCGGTTGGCGGGTAAACCGGCGTAACGCCAAAGTGCGTTATCAGCAGGTTTCTGTGCGGGGATCCATGTTCTCATGTCACCTCCTGAGTAATGTCATTTGTCATGGGTAAGTATAGCCATTTGTCATGGTGGATGGAATCGGTGTTTTTGTGAGGGGGATTGATGCGAAGAAAGGTGTTTTGACCCTAATTTTTAGCGTTTGTGTAATTTATTGATTTTAAATGAGTATTCTTGGTGGGTAAAAAAGAGGGTTAGAGAGGGTTTTTTAGCTTTTTTTGTATGCAAATCAGAAGGGTGTGGGGATATTATTTCA # Right flank : CTGGAACGAACGGCTAAATTATTGTTCAAATAATCGACCGCACCACAAAAAAATAAAGCCGGGAAAACCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGTAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTGAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACGGAAAGCGCATTCGTAAAGGGGATACAACA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 117049-116300 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPNW01000011.1 Enterobacter roggenkampii strain DS05262 opera_scaffold_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 117048 28 100.0 33 ............................ GCCCTGCGGAATGTACCACCAGCGATCAATAAT 116987 28 100.0 32 ............................ GGATGAAGCTGCGGAGCGCGTCGCGCAGGCCC 116927 28 100.0 32 ............................ AGCACGTCTGCTGCGGTGATATCGTTAATACT 116867 28 96.4 32 ..........T................. TGCGCAAACCTCAGTCATAGGAGCGGTTAGCG 116807 28 100.0 32 ............................ GTTATACGTCCCCCGGTCAGCCGGGCAGCATT 116747 28 100.0 32 ............................ TCATGGGTGGCTTGCTGTGCTCATAACCATTT 116687 28 100.0 32 ............................ TCATGGGTGGCTTGCTGTGCTCATAACCATTT 116627 28 100.0 32 ............................ ATACGCGTGGACGACGGGCTTCAGGCGAGTTC 116567 28 100.0 32 ............................ TACCCGAAATGTGACTATAAGAATCACTCTCT 116507 28 100.0 32 ............................ TACAGCGTCTGAATAAGTGCCCCGATACTTCT 116447 28 100.0 32 ............................ CGCACTTATGGCGAGTGGTAAAGATTGAAAGG 116387 28 89.3 32 .........T.....A....G....... AATGAGCAACATCGACAAACAGGCGCTACACA 116327 28 78.6 0 ...........C.........AC.ACT. | ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TACTCCCACAAACGCAGCCCGTATGTCGTTGCCTAGGGGCTTATCTGGAAGAGGTAAAATCCGGACTCACAGAATCTATGCGTGATTTTCAGGTGGTGGAATTTGCGGACGAAGCAGAACAACCGCGACAAAAAGAGAGGCTGCTGGAAGACACCGAAACGAAATGTGATTACTGCCGGGCGTTGAATCATGTGCTGCTGGTGTCGCATTTTGATCCCGATATGCTGCCGCACCTTACAGGGCTACTCCATGACATTACGCATTCTATGGCCGCAGATGTCGTTGCACCTCAAAGTGCAGAAACGGTAGTTCACATTATTTCCTGAATTTAGTTTGTGGCGTCGGGGATAATCCCTGGACGCCACTGGCTTGACCCTTTTTTGATGATTGCGTAACCTTTTGATTTATATAATGCGAATTTACTAACCAGAAAAAAGGGTTTTATGCGGGAAAGTTGATTATTTTCTTTTCTAACAATAAGATGGCGTAGTTTCCTTTCA # Right flank : AAAACGACTCTCTAAAACATTCAGCTTACCTATTTAAAACTTAATACGATCAAACCCACATTCTTTATTTTTCGCAATAAATAAAAAATTCATTCACATACCAATTATATTCCAATGAATATATTGTTCGTAAAAATAATGCATTAAATGGAAAAGTGATTTTTCACTTTATTATCACGGCAATTACTCTTCATTTGATACCCGTCACATTTGTTTTCATCTTATCTTCGATAACATACCGCGCATTCAACACTTTGAAATAAAAGCCCTTGCTATGTCCGTAAACAGCATCACTCCAACAGACTTAAAAACCATCCTGCATTCAAAGCGCGCCAATATTTATTACCTGGAAAAATGTCGCATCCAGGTGAATGGCGGGCGTGTTGAATATGTCACCCAGGAAGGCAAGGAGTCGTTTTACTGGAATATTCCCATCGCGAATACCACGGCAGTGATGCTGGGAATGGGAACATCCGTTACACAAATGGCAATGCGGGAGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 132820-132073 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPNW01000011.1 Enterobacter roggenkampii strain DS05262 opera_scaffold_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 132819 28 100.0 32 ............................ GCCCCGGCGCCCAGCGGCCGGTCGAATCGTTC 132759 28 100.0 32 ............................ CATCAACGCACGACCCGCGCCGCGCTGAAAAG 132699 28 100.0 32 ............................ AATATTGTCCGATAATGTCCGTACTAAGTTTT 132639 28 100.0 32 ............................ AGCGGCTACGGTGGGAGTTCAGTACACCACGC 132579 28 100.0 32 ............................ TTTGCGGGCGCTGCCTGTGCTGGCTTGCCGCC 132519 28 100.0 30 ............................ ATTGCTTCACCGTAGGTAGTGACTGTGTAT 132461 28 100.0 33 ............................ AATACCCATAATTTACTCCTTACGTGATTTTTT 132400 28 96.4 32 ...............T............ TGGAAGAGCAATGCCTGCTACTGGATGGTAAC 132340 28 100.0 32 ............................ GATAATACTAAAGTGACGCTGGATCAAAAATT 132280 28 100.0 32 ............................ GATTTGAGGGGGCGGCCGGTGGTCGTTCTGTC 132220 28 100.0 32 ............................ ATCCACTCGGAATCTCCGGCCTTTGACTTCTT 132160 28 100.0 32 ............................ AAACGGGCAGGAGTTAAAAATGAAAGCAATAG 132100 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGGGTTGCATAAGCTGTTTGGTGGGGTGGGCTTTATCAGCGGTATGCTGGTGGAGAAAGGGCTGCCGGGGTTTATTGCCTACGGCGTGTTGATTGGCGAAGTGGTGGCGCCGATCCTGATTATTGTCGGGCTCTTTACGCGCCTGGCCGCGCTGGTGCTGGCGTTTACGATGATCGTGGCGTGGCTGATGGTGGGATTGGATGAGACATTCGTGCTCGACAAGGTCGGGGCATGGGCGATTGAAAGCCTGGTGTACTTCTTTATCGGCTCGCTGGCGGTGGCGTTTTTAGGGGCAGGGCGGTTTGCGCTGGGGAAAGCACCTGTGTGGCGGTAGGGGTTGGAATCTGTTCCGAGGAAAGGGGTCTACGGACCCTTTTTTTATTGGTGAGTTTTAAGTTGTTGATTTCACAACGGTGAATTGTTGGTGGGGAAAAAAGGGTTTACGGAGAATTTTAGGGGGATTTCTTTATATCACAAGAAGATAGGTGTAGATTGTTCCA # Right flank : GCACTTCAGCCGGGTAAGCGTCGGTGGTTAGGGTCCAATGCCGAACACGCAGTAGGCACAACGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACGAACGAACGTTTATTGTTTATGCGAGGACCAGATCGCCCTGCGGATGGCACGAGCACGCCAGCACGTAACCCTCGGCAATTTCCGCGTCGGACAGCGTCATGGTGCTGGTGACGGTATACTCCCCGGAAACCACCTTTGTTTTACAGCAGCCGCACACCCCGGCACGGCAGGCCGCCGCCACCGGTACGTTGTTGCTTTCCAGCGCCTCCAGCAGCGTCGTGCCCACGCGGCCAAAGAAGGTCTGAGCAGGCTGCAGTTTGGTGAACTGAATCCCGCTGGTTGCCGCTTCCGCCACCGGCGTGAAGAACTGCTCTTTGAAGAAGCGGGTCACGCCGAGCGCTTTCACGTCTTCTTCCACGATAGCCATGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //